View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7622_low_3 (Length: 460)
Name: NF7622_low_3
Description: NF7622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7622_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 13 - 442
Target Start/End: Original strand, 1027730 - 1028161
Alignment:
| Q |
13 |
aatatcctacttatgctggatccattaacgatttacatagatcttcaaaaccatatcctagttattctgaatatgatccagcaaattggtgctgcaatat |
112 |
Q |
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| T |
1027730 |
aatatcctacttatgttggatccattaacgatttacatagatcttcaaaaccatatcctagttatcctgaatatcatccagcaaattggtgctgcaatat |
1027829 |
T |
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| Q |
113 |
tgtcattgcactttgttgtaattcatagtctaaagcatagcatgatgtatcgcaaaaataataagaattaaaaattcaactacatcatctcacaaagaaa |
212 |
Q |
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| T |
1027830 |
tgtcattgcactttgttgtaattcatagtctaaagcaaagcatgatgtatcgcaaaaataataagaattaaaaattcaactacatcatctcacaaagaaa |
1027929 |
T |
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| Q |
213 |
tgaataaaactttag--nnnnnnnnncctaatgttttacggtattcaactttgcagtgtgttttatgtgtgtgtccaaatactgttgatatgggtagtgc |
310 |
Q |
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| T |
1027930 |
tgaataaaactttagtttttttttttcctaatgttttacggtattcaactttgcagtgtgttttatgtgtgtgtccaaacactgttgatttgggtagtgc |
1028029 |
T |
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| Q |
311 |
ttaggaaactataagcctgtgaaagagcataataataacacaaagggtctacttggattgacttgtttgagtttatgtgttgcataagcatttatgagac |
410 |
Q |
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| T |
1028030 |
ttaggaaactataagcctgggaaagagcataataataacacaaagggtctacttggattgacttgtttgagtttatctgttgcataagcatttatgagac |
1028129 |
T |
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| Q |
411 |
tcttggggagaacttatagacacaggcaaaca |
442 |
Q |
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| T |
1028130 |
tcttggggagagcttatagacacaggcaaaca |
1028161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 1025525 - 1025563
Alignment:
| Q |
159 |
gtatcgcaaaaataataagaattaaaaattcaactacat |
197 |
Q |
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| T |
1025525 |
gtatcgcaaaaataatcagaattaaaaattcacctacat |
1025563 |
T |
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