View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7622_low_5 (Length: 355)
Name: NF7622_low_5
Description: NF7622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7622_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 22 - 279
Target Start/End: Original strand, 2506122 - 2506376
Alignment:
| Q |
22 |
tagctttgggaccctaaaggtttgggaagactacaaatcagggaaatacatggggttcaaactaccctgttaaaacagctgtgttacataagtttttgtt |
121 |
Q |
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| T |
2506122 |
tagctttgggaccctaaaggtttgggaagactacaaatcagggaaatacatggggttcaaactaccctgttaaaacagctgtgttacataagtttttgtt |
2506221 |
T |
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| Q |
122 |
tgtatacctctctccnnnnnnnnattagtttttgttattttcgcatatattaagaaaaagtagataccgcatttaatgtgtccgttttgtgaatgaacgt |
221 |
Q |
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| T |
2506222 |
tgtatacctctctccttttttttattagtttttgttattttcgcatatattaag-aaaagtagataccgcatttaatgtgtccgttttgtgaatgaacgt |
2506320 |
T |
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| Q |
222 |
taccaaattactcttttgtgtgtaagatgtgttcaaaagaatatcaataagctaatca |
279 |
Q |
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| T |
2506321 |
taccaaattacgc--tcgtgtgtaagatgtgttcaaaagaatatcaataagttaatca |
2506376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 285 - 342
Target Start/End: Original strand, 2506353 - 2506410
Alignment:
| Q |
285 |
aaaataatatcaataagttaatcagggacaataaacatgactttcaatcaatagagta |
342 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2506353 |
aaaagaatatcaataagttaatcagggacaataaacatgactttcaatcaatagagta |
2506410 |
T |
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