View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7622_low_7 (Length: 335)
Name: NF7622_low_7
Description: NF7622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7622_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 8088805 - 8088483
Alignment:
| Q |
1 |
aagaaaacatgctagggacacaatacctgagttgatgttcatgtttatatatgggtagtaacagttactgaagaacttcattatactttttcaacaattg |
100 |
Q |
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||||||||||||||||||||||||| || |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8088805 |
aagaaaacatgctagggacacaatatctaagttgatgttcatgcttgtatatgggtagtaacagttactgaagaacttcattatactttttcaacaattg |
8088706 |
T |
|
| Q |
101 |
ctcgccatcactaattaggatcatagaacatggatttgagctaggttgagctttgactttagaaactttcttcttatatagaagcttatctagaagttta |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8088705 |
ctcgccattactaattaggatcatagaacatggatttgagccaggctgagctttgactttagaaactttcttcttaaatagaagcttatctagaagttta |
8088606 |
T |
|
| Q |
201 |
ggataggttcttggattggtatgaccagtctaga-----nnnnnnnnnnnnngataaagctagacaatgaaataaatgaaatcaggagaggcatgaacca |
295 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8088605 |
ggataggttcttggattggtatgaccagtctagatttatttttatttttttttataaagctagacaatgaaataaatgaaatcaggagaggcatgaacca |
8088506 |
T |
|
| Q |
296 |
tatacaaaatcaatccatggaaa |
318 |
Q |
| |
|
|||||||||| |||||||||||| |
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|
| T |
8088505 |
tatacaaaattaatccatggaaa |
8088483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 313
Target Start/End: Original strand, 14867765 - 14867801
Alignment:
| Q |
277 |
tcaggagaggcatgaaccatatacaaaatcaatccat |
313 |
Q |
| |
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| T |
14867765 |
tcaggagaggcctgaaccaaatacaaaatcaatccat |
14867801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 313
Target Start/End: Complemental strand, 17229829 - 17229778
Alignment:
| Q |
261 |
aatgaaataaatgaaatcaggagaggcatgaaccatatacaaaatcaatccat |
313 |
Q |
| |
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| T |
17229829 |
aatgaaataaaagaac-caggagaggcctgaaccatatacaaattcaatccat |
17229778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 313
Target Start/End: Original strand, 288632 - 288668
Alignment:
| Q |
277 |
tcaggagaggcatgaaccatatacaaaatcaatccat |
313 |
Q |
| |
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||||||||||| ||||||||||||||| ||||||||| |
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| T |
288632 |
tcaggagaggcctgaaccatatacaaagtcaatccat |
288668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 313
Target Start/End: Original strand, 14236572 - 14236608
Alignment:
| Q |
277 |
tcaggagaggcatgaaccatatacaaaatcaatccat |
313 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||| |
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|
| T |
14236572 |
tcaggagaggcctgaaccaaatacaaaatcaatccat |
14236608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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