View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7622_low_8 (Length: 332)
Name: NF7622_low_8
Description: NF7622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7622_low_8 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 47601290 - 47601605
Alignment:
| Q |
1 |
ggactatacactgtgataccggcacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtctacaaccattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47601290 |
ggactatacactgtgataccggcacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtctacaaccattg |
47601389 |
T |
|
| Q |
101 |
agtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaaagcgaggacaataactttcgagattttcagcacaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
47601390 |
agtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaaagcgaggacaataactttcaagattttcagcacaatt |
47601489 |
T |
|
| Q |
201 |
ttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaacttttctactttgcttcccacttttgtcactataccaaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47601490 |
ttgacacgatctgcatgaatcgatcatgaagccaacacccactttgtctccaactttgaacttttctactttgcttcccacttttgtcactataccaaca |
47601589 |
T |
|
| Q |
301 |
atctcatgtctgtatt |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
47601590 |
atctcatgtctgtatt |
47601605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 6e-71; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 13389279 - 13388964
Alignment:
| Q |
1 |
ggactatacactgtgataccggcacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtctacaaccattg |
100 |
Q |
| |
|
||||| ||||| ||||| || |||||||| ||||| |||| |||||||||||| || ||||| |||||||||||||| |||| ||| ||| |||||| || |
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|
| T |
13389279 |
ggactgtacacagtgatcccagcacaaaggagaggtgcagcagcttcaagtggtaatccatcaggaatgtgaaccacgaagttctcatctgcaaccaatg |
13389180 |
T |
|
| Q |
101 |
agtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaaagcgaggacaataactttcgagattttcagcacaatt |
200 |
Q |
| |
|
||||||| |||||||| |||||| | || ||||| ||||| ||||||||||||||| ||||| ||||| ||| |||| ||||| ||| ||||||| |
|
|
| T |
13389179 |
agtcagaataacctccatatgtgctcgttccatcgcgatacttggcaccacatgtgaaagtaaatgtgggacagtaattttcaagattgtcaacacaatt |
13389080 |
T |
|
| Q |
201 |
ttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaacttttctactttgcttcccacttttgtcactataccaaca |
300 |
Q |
| |
|
|||||| |||| |||||||| | |||| |||||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
13389079 |
ttgacatgatcgacatgaatcaaccatgtagccaacacctactttgtctccaacattgaacttttctactttgcttcccacctttgtcactataccaaca |
13388980 |
T |
|
| Q |
301 |
atctcatgtctgtatt |
316 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
13388979 |
atctcatgcctgtatt |
13388964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 13385458 - 13385143
Alignment:
| Q |
1 |
ggactatacactgtgataccggcacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtctacaaccattg |
100 |
Q |
| |
|
||||| ||||| ||||| || |||||||| ||||| |||| |||||||||||| || ||||| |||||||||||||| |||| ||| | ||||||| || |
|
|
| T |
13385458 |
ggactgtacacagtgatcccagcacaaaggagaggtgcagcagcttcaagtggtaatccatcaggaatgtgaaccacgaagttctcagccacaaccaatg |
13385359 |
T |
|
| Q |
101 |
agtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaaa-gcgaggacaataactttcgagattttcagcacaat |
199 |
Q |
| |
|
||||||| |||||||||| |||| |||| |||||||||| || ||||| ||| | || | ||| || || ||| |||| ||||| ||| |||||| |
|
|
| T |
13385358 |
agtcagaataacctccgtgtgtgatggttccatcacgatgcatgccaccaactgtagtagtgtatgcgggg-cagtaattttcaagattgtcaacacaat |
13385260 |
T |
|
| Q |
200 |
tttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaacttttctactttgcttcccacttttgtcactataccaac |
299 |
Q |
| |
|
|||||||||||| |||||||| || ||| |||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13385259 |
tttgacacgatcgacatgaatcaattatgtagccaacacctactttgtctccaacattgaacttttctactttgcttcccacctttgtcactataccaac |
13385160 |
T |
|
| Q |
300 |
aatctcatgtctgtatt |
316 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
13385159 |
aatctcatgcctgtatt |
13385143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 13419468 - 13419745
Alignment:
| Q |
1 |
ggactatacactgtgataccggcacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtctacaaccattg |
100 |
Q |
| |
|
||||||||||||||||| || || |||||||||||| | | ||| ||||| || || | ||| |||||| ||| |||||||||||||||| ||||||||| |
|
|
| T |
13419468 |
ggactatacactgtgattccagcgcaaagaagaggaccggcagcatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattg |
13419567 |
T |
|
| Q |
101 |
agtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaaagcgaggacaataactttcgagattttcagcacaatt |
200 |
Q |
| |
|
|||| ||||||||||| |||||| ||||||||||||||| || |||||||||||| ||||||| || || ||| | || |||| ||||||||||| |
|
|
| T |
13419568 |
agtcggagtaacctccatatgtgacggtgccatcacgatactttgcaccacatgtgactgtaaatgttgggcagtaattctcaagatcgtcagcacaatt |
13419667 |
T |
|
| Q |
201 |
ttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaacttttctactttgcttcc |
278 |
Q |
| |
|
||| || || | |||||||| | |||| | || ||||| ||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
13419668 |
ttggcatgaacgacatgaatcaaccatgtatcccacaccaactttgtctccaactttaaacttttctactttgcttcc |
13419745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 64 - 316
Target Start/End: Original strand, 13413186 - 13413438
Alignment:
| Q |
64 |
ggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaa |
163 |
Q |
| |
|
|||||| ||| |||||||||||||||| ||||||||||||| ||||||||||| || ||| ||| ||||||||||| ||||||||||||||| || || |
|
|
| T |
13413186 |
ggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccataagtgacggttccatcacgatacttggcaccacatgtgactacaa |
13413285 |
T |
|
| Q |
164 |
agcgaggacaataactttcgagattttcagcacaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaactt |
263 |
Q |
| |
|
| || || ||| | || ||||| ||| ||||| ||| || |||| |||||||| |||| | |||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
13413286 |
atttggggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaatcaatcaagtagccaacacctactttgtctccaactttaaactt |
13413385 |
T |
|
| Q |
264 |
ttctactttgcttcccacttttgtcactataccaacaatctcatgtctgtatt |
316 |
Q |
| |
|
|| ||||||||||| |||| ||| |||||||| ||| |||||| ||||||| |
|
|
| T |
13413386 |
ctccactttgcttcctacttctgttactatacccgcaagctcatgcctgtatt |
13413438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 13393686 - 13393539
Alignment:
| Q |
1 |
ggactatacactgtgataccggcacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtctacaaccattg |
100 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||||||| || ||||||||| || ||||| ||||||||||| | ||||||||| ||| ||||||||| |
|
|
| T |
13393686 |
ggactatacacagtaataccggcacaaaggagaggagcagcagattcaagtggtaagccatcaggaatgtgaactataaagtgctcatctgcaaccattg |
13393587 |
T |
|
| Q |
101 |
agtcagagtaacctccgtatgtggtggtgccatcacgatatttggcac |
148 |
Q |
| |
|
|||||||||| ||||| |||||| || | ||||||| |||||||||| |
|
|
| T |
13393586 |
agtcagagtaccctccatatgtgatgcttccatcactgtatttggcac |
13393539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 13426359 - 13426636
Alignment:
| Q |
1 |
ggactatacactgtgataccggcacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtctacaaccattg |
100 |
Q |
| |
|
|||||||||||||||| || || |||||||||||| | | | | ||||| || || | ||| |||||| ||| |||||||||||| ||| ||||||||| |
|
|
| T |
13426359 |
ggactatacactgtgactccagcgcaaagaagaggaccggcaacatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcatctgcaaccattg |
13426458 |
T |
|
| Q |
101 |
agtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaaagcgaggacaataactttcgagattttcagcacaatt |
200 |
Q |
| |
|
|||| || |||||||| |||||| | ||||||||||||| || ||||||||||| |||| | || || ||| | || |||| ||| |||||||| |
|
|
| T |
13426459 |
agtcggaataacctccatatgtgacgctgccatcacgatacttagcaccacatgtaactgtttgttgggggcagtaattctcaagatcttccgcacaatt |
13426558 |
T |
|
| Q |
201 |
ttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaacttttctactttgcttcc |
278 |
Q |
| |
|
|| || || | |||||||| | |||| | || || || ||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
13426559 |
ttcgcatgaacgacatgaatcaaccatgtatcccactcctactttgtctccaactttaaacttttctactttgcttcc |
13426636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 13453972 - 13454283
Alignment:
| Q |
1 |
ggactatacactgtgataccggcacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtctacaaccattg |
100 |
Q |
| |
|
|||||||| || || || || |||||||| |||||||||| || ||||| || || ||| |||||| ||| ||||||||||||||| |||||||| |
|
|
| T |
13453972 |
ggactatatacggttatcccagcacaaaggagaggagcagctgcatcaagaggtaactgatctggaatgcgaaacacaaagtgctcgtcggaaaccattg |
13454071 |
T |
|
| Q |
101 |
agtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaaagcgaggacaataactttcgagattttcagcacaatt |
200 |
Q |
| |
|
|||||||| | ||||| | ||| |||| ||||||| ||||||| |||| ||| ||| || | ||||| ||| | || ||||| ||| ||||||| |
|
|
| T |
13454072 |
agtcagagaagcctccatgagtgctggttccatcactgtatttggaaccatcagtgagtgtcaattggggacagtaattctcaagattatcaacacaatt |
13454171 |
T |
|
| Q |
201 |
ttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaacttttctactttgcttcccacttttgtcactataccaaca |
300 |
Q |
| |
|
|||||| || || ||||| | || | | || ||||| ||| | ||||||||||||||||||| |||||||||||||||| ||| ||||| |||||| |
|
|
| T |
13454172 |
ttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactttgcttcccacttctgtaactatgccaaca |
13454271 |
T |
|
| Q |
301 |
atctcatgtctg |
312 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
13454272 |
atttcatgtctg |
13454283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 13447019 - 13447156
Alignment:
| Q |
1 |
ggactatacactgtgataccggcacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtctacaaccattg |
100 |
Q |
| |
|
|||||||||||||||| || || |||||||||||| | | | | ||||| || || | ||| |||||| ||| |||||||||||||||| ||||||||| |
|
|
| T |
13447019 |
ggactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattg |
13447118 |
T |
|
| Q |
101 |
agtcagagtaacctccgtatgtggtggtgccatcacga |
138 |
Q |
| |
|
|||| ||| ||||||| || ||| | |||||||||||| |
|
|
| T |
13447119 |
agtcggagaaacctccataggtgatagtgccatcacga |
13447156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 13393452 - 13393379
Alignment:
| Q |
235 |
acacccactttatctccaactttgaacttttctactttgcttcccacttttgtcactataccaacaatctcatg |
308 |
Q |
| |
|
||||||||||| ||||||| ||||||||| |||||||||||||| || | |||||||||||| |||||||||| |
|
|
| T |
13393452 |
acacccactttgtctccaattttgaacttctctactttgcttcctacctccgtcactataccagcaatctcatg |
13393379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 13379009 - 13379140
Alignment:
| Q |
4 |
ctatacactgtgataccggcacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtctacaaccattgagt |
103 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||| | ||| ||||||| || |||||||||| | || | |||||| ||||| |||||||| | || |
|
|
| T |
13379009 |
ctatacactgtgatcccagcacaaaggagaggagcggcagcatcaagtgataaggcatcgggaatacggacaataaagtgttcgtcgacaaccatggtgt |
13379108 |
T |
|
| Q |
104 |
cagagtaacctccgtatgtggtggtgccatca |
135 |
Q |
| |
|
||||||| ||||| |||||| | ||||||||| |
|
|
| T |
13379109 |
cagagtagcctccatatgtgatagtgccatca |
13379140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 13447259 - 13447299
Alignment:
| Q |
241 |
actttatctccaactttgaacttttctactttgcttcccac |
281 |
Q |
| |
|
||||| ||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
13447259 |
actttgtctccaactttaaacttttttactttgcttcccac |
13447299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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