View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7623_high_14 (Length: 243)
Name: NF7623_high_14
Description: NF7623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7623_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 61 - 191
Target Start/End: Complemental strand, 8747695 - 8747565
Alignment:
| Q |
61 |
gttcacacacggtagacattcttatgatgttagtttgaaagtctcatcatggttttggccccttgaatagcatgttgctgtgtgaagctacttcatcgag |
160 |
Q |
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| T |
8747695 |
gttcacacaccgtggacattcatatcatgttaatttgaaagtctcatcatggttttggccccttgaagagcatgttgctacgtgaagcttcttcatcaaa |
8747596 |
T |
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| Q |
161 |
tttccctcattctacattgctaactcatgtt |
191 |
Q |
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| T |
8747595 |
tttccctcattctacattgctaactaatgtt |
8747565 |
T |
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Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 27 - 192
Target Start/End: Original strand, 47669940 - 47670108
Alignment:
| Q |
27 |
caatttgtgaatgatttgacatacattaatcctg---gttcacacacggtagacattcttatgatgttagtttgaaagtctcatcatggttttggcccct |
123 |
Q |
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|||||| | ||||||||||||||||||||||||| ||||| |||| |||||||||||||| |||||| ||||||||| || | ||| |||||||| || |
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| T |
47669940 |
caatttataaatgatttgacatacattaatcctgtaagttcatacaccgtagacattcttatcatgttaatttgaaagtttcgtaatgattttggccact |
47670039 |
T |
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| Q |
124 |
tgaatagcatgttgctgtgtgaagctacttcatcgagtttccctcattctacattgctaactcatgtta |
192 |
Q |
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|||| |||||||||||| |||||||| ||||||| |||||||||||||| |||||||||| |||||| |
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| T |
47670040 |
tgaagagcatgttgctgcgtgaagcttcttcatcatatttccctcattctaaattgctaacttatgtta |
47670108 |
T |
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