View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7623_high_2 (Length: 533)
Name: NF7623_high_2
Description: NF7623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7623_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 132 - 514
Target Start/End: Original strand, 52220676 - 52221058
Alignment:
| Q |
132 |
ggtttgaaattgaattgataagaatggaaataaaattatgagacacattccttaataataaaaaatagatattaacgnnnnnnnngtgattagttaccag |
231 |
Q |
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| T |
52220676 |
ggtttgaaattgaattgataagaatggaaataaaattatgagacacattccttaataataaaaaatagatattaacgaaaaaaaagtgattagttaccag |
52220775 |
T |
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| Q |
232 |
ccaatgccaaccacctaatccaacagctttcttaacaacaccttgaagaccaacaagaaccgattttgtacggttatttccagtaacaacaaccttagta |
331 |
Q |
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| T |
52220776 |
ccaatgccaaccacctaatccaacagctttcttaacaacaccttgaagaccaacaagaaccgattttgtacggttatttccagtaacaacaaccttagta |
52220875 |
T |
|
| Q |
332 |
tgacgaggtaacacagacagttcctcttcactactatnnnnnnnnnnnnnnnnnaagctttgcaaatgagtcgcgaaaccaccaccaccgttaactgaac |
431 |
Q |
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| T |
52220876 |
tgacgaggtaacacagacagttcctcttcactactatcaccaccaccaccaccaaagctttgcaaatgagtcgcgaaaccaccaccaccgttaactgaac |
52220975 |
T |
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| Q |
432 |
tttccattgcttcaatcattttgtctaattctgaaaattgaaataatcttaatgaagatcgtgcattgcttgttacgaatgtg |
514 |
Q |
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| T |
52220976 |
tttccattgcttcaatcattttgtctaattctgaaaattgaaataatcttaatgaagatcgtgcattgcttgttacgaatgtg |
52221058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 52220562 - 52220613
Alignment:
| Q |
18 |
atcaataagagcttcaaagcaattagatttcagcgtgattgaaggaatgttg |
69 |
Q |
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| T |
52220562 |
atcaataagagcttcaaagcaattagatttcagcgtgattgaaggagtgttg |
52220613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 225 - 368
Target Start/End: Original strand, 6721613 - 6721756
Alignment:
| Q |
225 |
ttaccagccaatgccaaccacctaatccaacagctttcttaacaacaccttgaagaccaacaagaaccgattttgtacggttatttccagtaacaacaac |
324 |
Q |
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| T |
6721613 |
ttaccagccaatgccaaccaccaagaccaacagctttcttaacaacaccacgaagaccaacaagaacagatttagtacggttatttccagtaacaacaac |
6721712 |
T |
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| Q |
325 |
cttagtatgacgaggtaacacagacagttcctcttcactactat |
368 |
Q |
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| T |
6721713 |
tttggtatgacgaggaagcacagaaagttcttcttcactactat |
6721756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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