View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7623_low_1 (Length: 654)
Name: NF7623_low_1
Description: NF7623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7623_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 70 - 635
Target Start/End: Original strand, 2414937 - 2415500
Alignment:
| Q |
70 |
aaaaatacatgtgtcaatgtcgttttcgtgtcggataccacacatgttggtgatatataggtaaggaaaactctcacttataaagatatatttagtgcat |
169 |
Q |
| |
|
||||| ||| ||||||||||||||||| || | || ||||||||||| ||||||||||| || ||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
2414937 |
aaaaacacacgtgtcaatgtcgttttcatg-cagacaccacacatgtcggtgatatataagtgaggaaaactctcacttataaaaatatatttagttcat |
2415035 |
T |
|
| Q |
170 |
atctcatcaaatgtgtatgactcttaacnnnnnnnnnnnnnnnnnnn-tggagtatattacattggcaaggcgaccatcggacatgccagaattggatct |
268 |
Q |
| |
|
|||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2415036 |
atctaatcaaatgt--atgactcttaacaaaaaaaataaaagcaaaaatggagtatattacattggcaaggcgaccatcggacatgccagaattggatct |
2415133 |
T |
|
| Q |
269 |
ccatttgatttgttggtcaggagggagccttcctgacctctggccttgaaaaaacaataaggatttagccaaagcttctctatagtttggtttgcattgg |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2415134 |
ccatttgatttgttggtcaggagggagccttcctgacctctggccttgaaaaaacaataaggatttagccaaagcttctctatagtttggtttgcattgg |
2415233 |
T |
|
| Q |
369 |
acattttcaacaaccagcaagcatgtaagaagtaacaagaaaagcaaggaagttctcattatgctcactggttgttgtcttgtgtgacccttttgcagaa |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2415234 |
acattttcaacaaccagcaagcatgtaagaagtaacaagaaaaccaaggaagttctcattatgctcactggttgttgtcttgtgtgacccttttgcagaa |
2415333 |
T |
|
| Q |
469 |
tcaacaccaaagtgcttttggctttatgacttcttggatgaagcaaaatgagttatatgctaccctttttataatacaagcaaagggnnnnnnnnnnnnn |
568 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2415334 |
tcaacaccaaagtgcttttggctttatgacttcttggatgaagcaaaatgagttatatgctaccctttttataatacaagcaaaggg-aaaaagaaaaaa |
2415432 |
T |
|
| Q |
569 |
nnntcacttggcgtggatcaaggcttttcaagggaaacaatatt-aaaaacttgtataatgttttagt |
635 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||| |
|
|
| T |
2415433 |
aaatcacttggcgtggatcaaggcttttcaagggtaacaatattaaaaaacttgtatagtgttttagt |
2415500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University