View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7623_low_12 (Length: 309)
Name: NF7623_low_12
Description: NF7623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7623_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 9 - 291
Target Start/End: Original strand, 31789164 - 31789446
Alignment:
| Q |
9 |
cattattctgttaactctcaaaccaagccgtttaaaacggcaacatataaaggagttctcaaacctcattcgaatatatctattcaaatgagagctcttt |
108 |
Q |
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| T |
31789164 |
catttttctgttaactctcaaacaaagccatttaaaacggcaacatataaaggagttctcaaacctcattcgaatatatctattcaaatgagaactcttt |
31789263 |
T |
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| Q |
109 |
gtatgcgaccaacgccttggcaacatacatcaccatgctttcaagatctcctatagttgtcattgtcatgttttgcactgtaattgcaaaagtatttttt |
208 |
Q |
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| T |
31789264 |
gtatgcgaccaacgccttggcaacatacatcaccatgctttcaagatctcctatagttgtcattgtcatgttttgcactgtaattgcaaaagtatttttt |
31789363 |
T |
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| Q |
209 |
gaggtgtaatagcaaaagttaactagttttgttacaagagggagtagtaactggtgtaactattcacaaattcctcaagggtg |
291 |
Q |
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| T |
31789364 |
gaggtgtaatagcaaaagttaactagttttgttacaagagggagtagtaactggtgtaactattcacaaattcctcaagggtg |
31789446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 53 - 291
Target Start/End: Original strand, 31784248 - 31784490
Alignment:
| Q |
53 |
atataaaggagttctcaaacctcattcgaatatatctattcaaatgagagctctttgtatgcgaccaacgccttggcaacatacatcaccatgctttcaa |
152 |
Q |
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| T |
31784248 |
atataaaggagttctcaaacctcattcgaatatatctattcaaatgagaactctttgtatgcgaccaacgccttggcaacatacatcaccatgctttcaa |
31784347 |
T |
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| Q |
153 |
gatctcctatagttgtcattgtcatgttttgcactgtaattgcaaaagtattttttgaggtgtaatagcaaaagttaactagttttgttacaagag---- |
248 |
Q |
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| T |
31784348 |
gatctcttatagtt---attgtcatgttttggactgtaattgcaaaagtattttttgaggtgtaatagcaaaagtcaactacttttgttacaagaggaag |
31784444 |
T |
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| Q |
249 |
--ggagtagtaactggtgtaactattcacaaatt-cctcaagggtg |
291 |
Q |
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| T |
31784445 |
gagtagtagtaactggtgtaactattcacaaattccctcaagggtg |
31784490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 31784187 - 31784226
Alignment:
| Q |
9 |
cattattctgttaactctcaaaccaagccgtttaaaacgg |
48 |
Q |
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| T |
31784187 |
catttttctgttaactctcaaacaaagccgtttaaaacgg |
31784226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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