View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7623_low_13 (Length: 291)

Name: NF7623_low_13
Description: NF7623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7623_low_13
NF7623_low_13
[»] chr2 (5 HSPs)
chr2 (7-173)||(39956225-39956391)
chr2 (55-162)||(6761693-6761799)
chr2 (129-162)||(5403581-5403614)
chr2 (51-92)||(32859888-32859929)
chr2 (53-90)||(41544082-41544119)
[»] chr5 (3 HSPs)
chr5 (48-162)||(31672445-31672558)
chr5 (53-106)||(29342406-29342459)
chr5 (120-156)||(29342366-29342402)
[»] chr7 (6 HSPs)
chr7 (53-162)||(17157733-17157842)
chr7 (53-161)||(8920667-8920775)
chr7 (58-103)||(43456791-43456836)
chr7 (52-105)||(9718958-9719010)
chr7 (53-90)||(14651354-14651391)
chr7 (129-162)||(20397509-20397542)
[»] chr8 (6 HSPs)
chr8 (53-106)||(9123963-9124015)
chr8 (54-105)||(4573198-4573249)
chr8 (55-106)||(18049524-18049574)
chr8 (53-99)||(26750646-26750692)
chr8 (51-105)||(42636328-42636382)
chr8 (51-91)||(37564295-37564335)
[»] chr4 (6 HSPs)
chr4 (53-106)||(7628047-7628100)
chr4 (52-161)||(35180568-35180677)
chr4 (117-162)||(41370196-41370241)
chr4 (126-162)||(23230272-23230308)
chr4 (191-225)||(56299386-56299420)
chr4 (52-105)||(13585225-13585277)
[»] chr1 (9 HSPs)
chr1 (56-91)||(46592437-46592472)
chr1 (124-162)||(4521043-4521081)
chr1 (40-90)||(46087200-46087250)
chr1 (53-90)||(34232675-34232712)
chr1 (53-90)||(36321590-36321627)
chr1 (53-106)||(50010450-50010503)
chr1 (117-149)||(3338054-3338086)
chr1 (126-162)||(17554891-17554927)
chr1 (117-149)||(45753496-45753528)
[»] chr3 (4 HSPs)
chr3 (120-162)||(30463988-30464030)
chr3 (124-162)||(37708470-37708508)
chr3 (53-90)||(52309272-52309309)
chr3 (53-105)||(29099267-29099318)
[»] chr6 (3 HSPs)
chr6 (48-97)||(6048230-6048279)
chr6 (56-97)||(16442177-16442217)
chr6 (118-162)||(10346023-10346067)
[»] scaffold0717 (1 HSPs)
scaffold0717 (54-90)||(4924-4960)


Alignment Details
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 7 - 173
Target Start/End: Original strand, 39956225 - 39956391
Alignment:
Q  7 tttggtgttacatacataaattacccaattttcataatttgtttttgggaaatgttaacgagtgtcctcggagcactctttaagatctttaaaaggtaac 106  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39956225 tttgatgttacatacataaattatccaattttcataatttgtttttgggaaatgttaacgagtgt-ctcggagcactctttaagatctttaaaaggtaac 39956323  T
Q  107 -nnnnnnnngcaaatttttgtaatcaatgcattgaaaattgaaacgtttaactttttcgatgaaatgg 173  Q
             |||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||    
T  39956324 tttttttttgcaaatttttgtaatcaacgcattggaaattgaaacgtttaacttttttgatgaaatgg 39956391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 162
Target Start/End: Original strand, 6761693 - 6761799
Alignment:
Q  55 gaaatgttaacgagtgtcctcggagcactctttaagatctttaaaaggtaacnnnnnnnngcaaatttttgtaatcaatgcattgaaaattgaaacgttt 154  Q
    |||||||||||||||| | | |||||||||||||||| |||||||| ||| |        | |||||| |||||||||||||||| |||||||||  |||    
T  6761693 gaaatgttaacgagtgcctttggagcactctttaagacctttaaaatgtatc-tttttttgaaaatttatgtaatcaatgcattggaaattgaaatattt 6761791  T
Q  155 aacttttt 162  Q
     |||||||    
T  6761792 gacttttt 6761799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 162
Target Start/End: Complemental strand, 5403614 - 5403581
Alignment:
Q  129 tcaatgcattgaaaattgaaacgtttaacttttt 162  Q
    ||||||||||||||||||||| ||||||||||||    
T  5403614 tcaatgcattgaaaattgaaatgtttaacttttt 5403581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 32859929 - 32859888
Alignment:
Q  51 ttgggaaatgttaacgagtgtcctcggagcactctttaagat 92  Q
    ||||||||||||||||||||| | ||| ||||||||||||||    
T  32859929 ttgggaaatgttaacgagtgttcccggggcactctttaagat 32859888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 41544119 - 41544082
Alignment:
Q  53 gggaaatgttaacgagtgtcctcggagcactctttaag 90  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  41544119 gggaaatgttaacgagtatccccggagcactctttaag 41544082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 162
Target Start/End: Complemental strand, 31672558 - 31672445
Alignment:
Q  48 tttttgggaaatgttaacgagtgtcctcggagcactctttaagatctttaaaaggtaacnnnnnnnngcaaatttttgtaatcaatgcattgaaaattga 147  Q
    ||||||||||||||||||||||| || ||| ||||||||||||| ||||||||||||||        | || |||||||||||||||||||| |||||||    
T  31672558 tttttgggaaatgttaacgagtgcccccggggcactctttaagacctttaaaaggtaac-tttttttgaaattttttgtaatcaatgcattggaaattga 31672460  T
Q  148 aacgtttaacttttt 162  Q
    ||| ||| |||||||    
T  31672459 aacatttgacttttt 31672445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 29342459 - 29342406
Alignment:
Q  53 gggaaatgttaacgagtgtcctcggagcactctttaagatctttaaaaggtaac 106  Q
    |||||||||||||||||| || ||| ||||| ||||||| ||||||||||||||    
T  29342459 gggaaatgttaacgagtgcccccggggcactttttaagacctttaaaaggtaac 29342406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 29342402 - 29342366
Alignment:
Q  120 tttttgtaatcaatgcattgaaaattgaaacgtttaa 156  Q
    |||||||||||||||||||| |||||||||| |||||    
T  29342402 tttttgtaatcaatgcattggaaattgaaacatttaa 29342366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 162
Target Start/End: Original strand, 17157733 - 17157842
Alignment:
Q  53 gggaaatgttaacgagtgtcctcggagcactctttaagatctttaaaaggtaacnnnnnnnngcaaatttttgtaatcaatgcattgaaaattgaaacgt 152  Q
    |||||||||||||||||| || ||  ||||||||||||| ||||||||||||||        | || || ||||||||||||||||| |||||||||| |    
T  17157733 gggaaatgttaacgagtgcccccgaggcactctttaagacctttaaaaggtaacttttttttgaaatttcttgtaatcaatgcattggaaattgaaacat 17157832  T
Q  153 ttaacttttt 162  Q
    || |||||||    
T  17157833 ttgacttttt 17157842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 161
Target Start/End: Original strand, 8920667 - 8920775
Alignment:
Q  53 gggaaatgttaacgagtgtcctcggagcactctttaagatctttaaaaggtaacnnnnnnnngcaaatttttgtaatcaatgcattgaaaattgaaacgt 152  Q
    |||||||||||||||||| ||  || ||||||||||||| |||||||||||||         | ||| || |||||||||||||||| |||||||||| |    
T  8920667 gggaaatgttaacgagtggccctggggcactctttaagacctttaaaaggtaatttttttttgaaaagttatgtaatcaatgcattggaaattgaaacat 8920766  T
Q  153 ttaactttt 161  Q
    || ||||||    
T  8920767 ttgactttt 8920775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 43456836 - 43456791
Alignment:
Q  58 atgttaacgagtgtcctcggagcactctttaagatctttaaaaggt 103  Q
    |||||||||||||||| ||| ||||||||||||| |||||||||||    
T  43456836 atgttaacgagtgtccccggggcactctttaagacctttaaaaggt 43456791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 9718958 - 9719010
Alignment:
Q  52 tgggaaatgttaacgagtgtcctcggagcactctttaagatctttaaaaggtaa 105  Q
    |||||||||||||||||||||||| || |||||||||||  ||||||| |||||    
T  9718958 tgggaaatgttaacgagtgtcctcaga-cactctttaagcactttaaatggtaa 9719010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 14651354 - 14651391
Alignment:
Q  53 gggaaatgttaacgagtgtcctcggagcactctttaag 90  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  14651354 gggaaatgttaacgagtgccctcggggcactctttaag 14651391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 162
Target Start/End: Original strand, 20397509 - 20397542
Alignment:
Q  129 tcaatgcattgaaaattgaaacgtttaacttttt 162  Q
    ||||||||||||||||||||| ||||||||||||    
T  20397509 tcaatgcattgaaaattgaaatgtttaacttttt 20397542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 9123963 - 9124015
Alignment:
Q  53 gggaaatgttaacgagtgtcctcggagcactctttaagatctttaaaaggtaac 106  Q
    ||||||||||||||||||| || |||||||||||||||| ||||||||||||||    
T  9123963 gggaaatgttaacgagtgttct-ggagcactctttaagacctttaaaaggtaac 9124015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 4573249 - 4573198
Alignment:
Q  54 ggaaatgttaacgagtgtcctcggagcactctttaagatctttaaaaggtaa 105  Q
    ||||||||||||||||| ||||||| || || ||||||||||||||| ||||    
T  4573249 ggaaatgttaacgagtgccctcggaacattcgttaagatctttaaaaagtaa 4573198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 106
Target Start/End: Complemental strand, 18049574 - 18049524
Alignment:
Q  55 gaaatgttaacgagtgtcctcggagcactctttaagatctttaaaaggtaac 106  Q
    |||||||||||||||| || ||| ||||||||||||| ||||||||||||||    
T  18049574 gaaatgttaacgagtgccc-cggggcactctttaagacctttaaaaggtaac 18049524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 26750692 - 26750646
Alignment:
Q  53 gggaaatgttaacgagtgtcctcggagcactctttaagatctttaaa 99  Q
    ||||||||||||||||||  ||||||||||||||||||  |||||||    
T  26750692 gggaaatgttaacgagtgcgctcggagcactctttaagcactttaaa 26750646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 42636328 - 42636382
Alignment:
Q  51 ttgggaaatgttaacgagtgtcctcggagcactctttaagatctttaaaaggtaa 105  Q
    ||||||||||||||||||||  | ||||||||||||||||  ||||||| |||||    
T  42636328 ttgggaaatgttaacgagtgctcccggagcactctttaagcactttaaatggtaa 42636382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 37564295 - 37564335
Alignment:
Q  51 ttgggaaatgttaacgagtgtcctcggagcactctttaaga 91  Q
    |||||||||||||||||||| || ||||||| |||||||||    
T  37564295 ttgggaaatgttaacgagtgcccacggagcattctttaaga 37564335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 7628100 - 7628047
Alignment:
Q  53 gggaaatgttaacgagtgtcctcggagcactctttaagatctttaaaaggtaac 106  Q
    |||||||||||||||||| || ||| ||||||||||||| ||||||||||||||    
T  7628100 gggaaatgttaacgagtgcccccggggcactctttaagacctttaaaaggtaac 7628047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 161
Target Start/End: Original strand, 35180568 - 35180677
Alignment:
Q  52 tgggaaatgttaacgagtgtcctcggagcactctttaagatctttaaaaggtaacnnnnnnnngcaaatttttgtaatcaatgcattgaaaattgaaacg 151  Q
    |||||||||||||||||||| | ||| ||||||||||||| || ||||| ||||         | ||| || ||||||||||| |||||||||||||||     
T  35180568 tgggaaatgttaacgagtgttcccggggcactctttaagacctgtaaaatgtaatttttttttgaaaaattatgtaatcaatgtattgaaaattgaaaca 35180667  T
Q  152 tttaactttt 161  Q
    ||| ||||||    
T  35180668 tttgactttt 35180677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 41370196 - 41370241
Alignment:
Q  117 aaatttttgtaatcaatgcattgaaaattgaaacgtttaacttttt 162  Q
    |||||| ||||||||||||||||||||||||||  |||||||||||    
T  41370196 aaatttgtgtaatcaatgcattgaaaattgaaatatttaacttttt 41370241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 23230272 - 23230308
Alignment:
Q  126 taatcaatgcattgaaaattgaaacgtttaacttttt 162  Q
    ||||||||||||||||||||||||| |||||||||||    
T  23230272 taatcaatgcattgaaaattgaaacatttaacttttt 23230308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 225
Target Start/End: Original strand, 56299386 - 56299420
Alignment:
Q  191 cttaaagaatgttccgaagacactcattaacaaga 225  Q
    ||||||||||||||||||||||||| |||||||||    
T  56299386 cttaaagaatgttccgaagacactcgttaacaaga 56299420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 13585225 - 13585277
Alignment:
Q  52 tgggaaatgttaacgagtgtcctcggagcactctttaagatctttaaaaggtaa 105  Q
    |||||||||||||||||||||||| || |||||||||||  ||||||| |||||    
T  13585225 tgggaaatgttaacgagtgtcctcaga-cactctttaagcactttaaatggtaa 13585277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 91
Target Start/End: Original strand, 46592437 - 46592472
Alignment:
Q  56 aaatgttaacgagtgtcctcggagcactctttaaga 91  Q
    |||||||||||||||||| |||||||||||||||||    
T  46592437 aaatgttaacgagtgtccccggagcactctttaaga 46592472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 4521043 - 4521081
Alignment:
Q  124 tgtaatcaatgcattgaaaattgaaacgtttaacttttt 162  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  4521043 tgtaatcaatgcattggaaattgaaatgtttaacttttt 4521081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 46087250 - 46087200
Alignment:
Q  40 ataatttgtttttgggaaatgttaacgagtgtcctcggagcactctttaag 90  Q
    |||||||||||||| ||||||||||| ||||  | ||||||||||||||||    
T  46087250 ataatttgtttttgagaaatgttaacaagtgctcccggagcactctttaag 46087200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 34232675 - 34232712
Alignment:
Q  53 gggaaatgttaacgagtgtcctcggagcactctttaag 90  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  34232675 gggaaatgttaacgagtgccctcggaacactctttaag 34232712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 36321590 - 36321627
Alignment:
Q  53 gggaaatgttaacgagtgtcctcggagcactctttaag 90  Q
    |||||||||||||||||||||| || ||||||||||||    
T  36321590 gggaaatgttaacgagtgtccttggggcactctttaag 36321627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 50010503 - 50010450
Alignment:
Q  53 gggaaatgttaacgagtgtcctcggagcactctttaagatctttaaaaggtaac 106  Q
    ||||||||||||||| ||  | ||||||||||||||| ||||||| ||||||||    
T  50010503 gggaaatgttaacgaatgctcccggagcactctttaaaatctttagaaggtaac 50010450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 3338054 - 3338086
Alignment:
Q  117 aaatttttgtaatcaatgcattgaaaattgaaa 149  Q
    |||||| ||||||||||||||||||||||||||    
T  3338054 aaatttatgtaatcaatgcattgaaaattgaaa 3338086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 17554927 - 17554891
Alignment:
Q  126 taatcaatgcattgaaaattgaaacgtttaacttttt 162  Q
    |||||||||||||| |||||||||| |||||||||||    
T  17554927 taatcaatgcattgtaaattgaaacatttaacttttt 17554891  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 45753528 - 45753496
Alignment:
Q  117 aaatttttgtaatcaatgcattgaaaattgaaa 149  Q
    |||||| ||||||||||||||||||||||||||    
T  45753528 aaatttgtgtaatcaatgcattgaaaattgaaa 45753496  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 30463988 - 30464030
Alignment:
Q  120 tttttgtaatcaatgcattgaaaattgaaacgtttaacttttt 162  Q
    ||||||||||||||||||| |||||||||| |||| |||||||    
T  30463988 tttttgtaatcaatgcattaaaaattgaaatgtttgacttttt 30464030  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 37708508 - 37708470
Alignment:
Q  124 tgtaatcaatgcattgaaaattgaaacgtttaacttttt 162  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  37708508 tgtaatcagtgcattgaaaattgaaatgtttaacttttt 37708470  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 52309309 - 52309272
Alignment:
Q  53 gggaaatgttaacgagtgtcctcggagcactctttaag 90  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  52309309 gggaaatgttaacgagtgtccccggggcactctttaag 52309272  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 29099318 - 29099267
Alignment:
Q  53 gggaaatgttaacgagtgtcctcggagcactctttaagatctttaaaaggtaa 105  Q
    ||||||||||||||||||||| | ||| |||||||||||  ||||||||||||    
T  29099318 gggaaatgttaacgagtgtcc-ccgagtactctttaagacttttaaaaggtaa 29099267  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 6048230 - 6048279
Alignment:
Q  48 tttttgggaaatgttaacgagtgtcctcggagcactctttaagatcttta 97  Q
    |||||| ||||||||||||||||||| ||| |||| |||||||| |||||    
T  6048230 tttttgagaaatgttaacgagtgtccccggggcacactttaagaccttta 6048279  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 16442217 - 16442177
Alignment:
Q  56 aaatgttaacgagtgtcctcggagcactctttaagatcttta 97  Q
    |||||||||||||||||| ||||||||||||||||| |||||    
T  16442217 aaatgttaacgagtgtcc-cggagcactctttaagaccttta 16442177  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 10346023 - 10346067
Alignment:
Q  118 aatttttgtaatcaatgcattgaaaattgaaacgtttaacttttt 162  Q
    ||||| |||||||||||||||||||||||||   |||||||||||    
T  10346023 aatttatgtaatcaatgcattgaaaattgaagtttttaacttttt 10346067  T

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Target: scaffold0717 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 4924 - 4960
Alignment:
Q  54 ggaaatgttaacgagtgtcctcggagcactctttaag 90  Q
    |||||||||||||||||||||||| |||| |||||||    
T  4924 ggaaatgttaacgagtgtcctcggggcacgctttaag 4960  T

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