View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7623_low_14 (Length: 289)
Name: NF7623_low_14
Description: NF7623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7623_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 30822432 - 30822688
Alignment:
| Q |
18 |
gcaccatctgatcactgttacaaacaaaaagttatatatttgttttcttaattaagagatatatgtggtttataatataaaataataataaagttttact |
117 |
Q |
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| T |
30822432 |
gcaccatctgatcactgttacaaacaaaaaattatatatttgttttcttaattaaaagatatatgtgatttataatataaaataataataaagttttact |
30822531 |
T |
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| Q |
118 |
ttgaggaaaatgctacatatataacgcgatagaagttatttcgaatttgtcacgaatcaatctaat----tgactacttaacaccactgaccgcctgatt |
213 |
Q |
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| T |
30822532 |
tggaggaaaatgctac----ataacgcgatagaagttattccgaatttgtcacgaatcaatctaattgactgactacttaacaccactaaccgcctgatt |
30822627 |
T |
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| Q |
214 |
tacataaaatatggaacttgatagcatcacttgttatgctctttccttcataaacccacag |
274 |
Q |
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| T |
30822628 |
tacataaaatatggaacttgataacatcacttgttatgctctttccttcataaacccacag |
30822688 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 235
Target Start/End: Original strand, 4888271 - 4888356
Alignment:
| Q |
150 |
aagttatttcgaatttgtcacgaatcaatctaattgactacttaacaccactgaccgcctgatttacataaaatatggaacttgat |
235 |
Q |
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| T |
4888271 |
aagttatttagaatttgtcccgaatcaatctaattggctacttagaatcactaaccgaatgttttccacaaaatatggaacttgat |
4888356 |
T |
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