View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7623_low_15 (Length: 282)

Name: NF7623_low_15
Description: NF7623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7623_low_15
NF7623_low_15
[»] chr2 (40 HSPs)
chr2 (5-129)||(325912-326036)
chr2 (144-282)||(44426194-44426333)
chr2 (144-282)||(2940699-2940837)
chr2 (144-282)||(34788824-34788962)
chr2 (144-282)||(19974689-19974828)
chr2 (144-282)||(36067607-36067746)
chr2 (144-282)||(31076120-31076259)
chr2 (144-282)||(31076703-31076842)
chr2 (144-282)||(22962559-22962698)
chr2 (144-280)||(32525213-32525350)
chr2 (144-282)||(2940060-2940199)
chr2 (144-282)||(32525792-32525930)
chr2 (144-282)||(38816015-38816151)
chr2 (144-282)||(36067059-36067198)
chr2 (144-282)||(44425626-44425764)
chr2 (144-282)||(34789229-34789366)
chr2 (144-275)||(39318136-39318267)
chr2 (144-282)||(40831308-40831443)
chr2 (193-280)||(42158417-42158504)
chr2 (144-282)||(19975269-19975407)
chr2 (145-282)||(42158870-42159007)
chr2 (198-282)||(2940639-2940723)
chr2 (144-282)||(19057962-19058100)
chr2 (170-282)||(39317589-39317701)
chr2 (144-233)||(22961773-22961863)
chr2 (198-282)||(32130382-32130464)
chr2 (148-282)||(11823555-11823685)
chr2 (144-223)||(38815461-38815545)
chr2 (144-282)||(1858955-1859091)
chr2 (198-282)||(1858496-1858579)
chr2 (155-223)||(1858954-1859022)
chr2 (214-282)||(39318189-39318256)
chr2 (144-282)||(42952376-42952511)
chr2 (214-282)||(22961784-22961852)
chr2 (155-223)||(40831307-40831374)
chr2 (155-222)||(1858512-1858579)
chr2 (228-282)||(44272948-44273002)
chr2 (155-223)||(44425696-44425765)
chr2 (144-223)||(1294138-1294218)
chr2 (155-222)||(39317633-39317701)
[»] chr3 (16 HSPs)
chr3 (144-282)||(33222011-33222150)
chr3 (144-282)||(38853086-38853222)
chr3 (144-282)||(38929510-38929648)
chr3 (144-282)||(38929015-38929154)
chr3 (144-282)||(23615767-23615905)
chr3 (144-282)||(38852516-38852654)
chr3 (144-282)||(13935172-13935311)
chr3 (144-282)||(50681199-50681335)
chr3 (198-282)||(13935760-13935844)
chr3 (144-282)||(33222583-33222723)
chr3 (144-282)||(34020248-34020386)
chr3 (163-280)||(50681738-50681856)
chr3 (144-282)||(29252786-29252920)
chr3 (155-223)||(13935243-13935312)
chr3 (155-223)||(29252785-29252854)
chr3 (228-282)||(34019779-34019835)
[»] chr8 (28 HSPs)
chr8 (144-282)||(36180950-36181087)
chr8 (144-282)||(38781801-38781938)
chr8 (144-281)||(37707332-37707469)
chr8 (144-282)||(38781234-38781373)
chr8 (150-282)||(764391-764523)
chr8 (144-282)||(28967792-28967931)
chr8 (144-282)||(28990425-28990565)
chr8 (144-282)||(28936955-28937094)
chr8 (147-282)||(764958-765093)
chr8 (148-282)||(22201767-22201901)
chr8 (193-280)||(9513672-9513759)
chr8 (146-223)||(28967229-28967305)
chr8 (144-223)||(14036666-14036746)
chr8 (144-223)||(28937573-28937653)
chr8 (144-223)||(28991040-28991120)
chr8 (167-282)||(9513162-9513277)
chr8 (144-220)||(22202381-22202454)
chr8 (214-282)||(28937574-28937642)
chr8 (214-282)||(28991041-28991109)
chr8 (214-282)||(14036677-14036745)
chr8 (214-282)||(28967238-28967304)
chr8 (155-223)||(22201834-22201902)
chr8 (214-282)||(37707343-37707410)
chr8 (144-282)||(32825045-32825184)
chr8 (145-223)||(37707881-37707956)
chr8 (155-223)||(28937026-28937095)
chr8 (246-282)||(14786260-14786296)
chr8 (243-279)||(17609338-17609373)
[»] chr7 (21 HSPs)
chr7 (144-282)||(1963462-1963600)
chr7 (144-282)||(47378508-47378647)
chr7 (162-282)||(31902547-31902666)
chr7 (144-282)||(42942023-42942160)
chr7 (147-282)||(2093921-2094056)
chr7 (144-282)||(8294428-8294565)
chr7 (144-282)||(8295586-8295723)
chr7 (144-282)||(28882318-28882457)
chr7 (144-282)||(42941443-42941582)
chr7 (144-279)||(37399388-37399521)
chr7 (162-282)||(1964038-1964159)
chr7 (145-282)||(31902038-31902173)
chr7 (170-282)||(2094480-2094592)
chr7 (144-223)||(28883175-28883255)
chr7 (188-282)||(47379080-47379174)
chr7 (145-265)||(42791790-42791907)
chr7 (228-282)||(37399445-37399498)
chr7 (214-282)||(28883176-28883244)
chr7 (155-223)||(2094479-2094548)
chr7 (155-223)||(42941514-42941583)
chr7 (167-223)||(33179570-33179625)
[»] chr5 (36 HSPs)
chr5 (144-282)||(42865978-42866114)
chr5 (144-282)||(35894695-35894832)
chr5 (150-282)||(13360320-13360452)
chr5 (144-282)||(42501704-42501842)
chr5 (144-282)||(42257266-42257404)
chr5 (144-282)||(39599927-39600069)
chr5 (144-282)||(43109428-43109567)
chr5 (144-282)||(13359772-13359910)
chr5 (144-282)||(35894117-35894256)
chr5 (144-282)||(28864152-28864290)
chr5 (144-282)||(39599346-39599484)
chr5 (144-282)||(42501125-42501264)
chr5 (144-282)||(1628840-1628977)
chr5 (145-282)||(42866547-42866684)
chr5 (144-233)||(42258104-42258194)
chr5 (144-233)||(43110263-43110353)
chr5 (144-281)||(12216131-12216266)
chr5 (144-282)||(10433460-10433597)
chr5 (152-282)||(57136-57264)
chr5 (198-282)||(1629407-1629491)
chr5 (144-282)||(10432961-10433097)
chr5 (145-282)||(24402387-24402521)
chr5 (146-223)||(28863282-28863358)
chr5 (144-274)||(12215579-12215708)
chr5 (214-282)||(43110274-43110342)
chr5 (145-223)||(43126618-43126696)
chr5 (229-282)||(57702-57755)
chr5 (155-223)||(1628910-1628978)
chr5 (147-222)||(6346276-6346352)
chr5 (144-223)||(31650406-31650485)
chr5 (225-282)||(12216190-12216245)
chr5 (155-223)||(35894188-35894257)
chr5 (155-223)||(42501196-42501265)
chr5 (246-282)||(1629467-1629503)
chr5 (144-223)||(31648410-31648490)
chr5 (214-282)||(42258115-42258183)
[»] chr4 (22 HSPs)
chr4 (150-282)||(34267747-34267878)
chr4 (144-282)||(45753297-45753435)
chr4 (144-282)||(51928333-51928470)
chr4 (144-282)||(34268291-34268429)
chr4 (144-282)||(38739231-38739370)
chr4 (144-282)||(50772762-50772899)
chr4 (213-282)||(40919806-40919874)
chr4 (144-282)||(41551200-41551339)
chr4 (144-204)||(38739859-38739920)
chr4 (144-223)||(45752778-45752858)
chr4 (213-282)||(38739810-38739879)
chr4 (214-282)||(45752789-45752857)
chr4 (144-223)||(41550671-41550755)
chr4 (244-282)||(40834215-40834253)
chr4 (144-196)||(17603679-17603728)
chr4 (155-223)||(38739302-38739371)
chr4 (155-223)||(50772831-50772900)
chr4 (144-282)||(35576715-35576854)
chr4 (216-280)||(40834732-40834795)
chr4 (144-204)||(40919766-40919825)
chr4 (244-282)||(32554752-32554790)
chr4 (167-223)||(36218116-36218173)
[»] chr1 (28 HSPs)
chr1 (144-282)||(5564193-5564331)
chr1 (144-282)||(6505201-6505339)
chr1 (144-282)||(6811068-6811206)
chr1 (144-282)||(6810499-6810636)
chr1 (144-282)||(37596673-37596810)
chr1 (144-282)||(6504666-6504804)
chr1 (188-282)||(52214494-52214588)
chr1 (162-282)||(26617452-26617573)
chr1 (144-282)||(52213914-52214051)
chr1 (144-282)||(51247125-51247262)
chr1 (167-282)||(37596949-37597064)
chr1 (146-282)||(30456057-30456190)
chr1 (188-282)||(5564768-5564862)
chr1 (144-223)||(26616908-26616984)
chr1 (144-223)||(14922043-14922123)
chr1 (144-264)||(7708682-7708800)
chr1 (168-223)||(51247124-51247180)
chr1 (144-223)||(40845413-40845491)
chr1 (155-223)||(5564767-5564836)
chr1 (155-223)||(37596742-37596811)
chr1 (246-282)||(5564828-5564864)
chr1 (144-223)||(7710138-7710215)
chr1 (144-223)||(14922490-14922570)
chr1 (246-282)||(14922491-14922527)
chr1 (144-223)||(32473807-32473887)
chr1 (246-282)||(32473808-32473844)
chr1 (155-223)||(37596948-37597016)
chr1 (246-282)||(52214554-52214590)
[»] chr6 (23 HSPs)
chr6 (144-282)||(29361604-29361742)
chr6 (144-282)||(17192381-17192520)
chr6 (144-282)||(17335707-17335845)
chr6 (144-282)||(17335132-17335270)
chr6 (144-282)||(31066350-31066486)
chr6 (144-282)||(31065797-31065933)
chr6 (193-282)||(24814370-24814459)
chr6 (144-223)||(6181131-6181211)
chr6 (144-282)||(32754851-32754988)
chr6 (144-267)||(15272872-15272997)
chr6 (147-196)||(15273775-15273824)
chr6 (147-223)||(17191850-17191926)
chr6 (199-282)||(6180617-6180700)
chr6 (186-282)||(29362159-29362255)
chr6 (167-223)||(35051795-35051851)
chr6 (228-282)||(15272898-15272952)
chr6 (214-282)||(6181132-6181200)
chr6 (229-281)||(24814431-24814483)
chr6 (144-223)||(28924844-28924923)
chr6 (229-282)||(18051609-18051660)
chr6 (155-223)||(6180632-6180701)
chr6 (214-282)||(17191858-17191925)
chr6 (198-282)||(24813843-24813927)
[»] scaffold0341 (2 HSPs)
scaffold0341 (144-282)||(6879-7018)
scaffold0341 (144-282)||(6349-6487)
[»] scaffold0045 (1 HSPs)
scaffold0045 (147-282)||(75237-75373)
[»] scaffold0025 (2 HSPs)
scaffold0025 (146-282)||(22269-22404)
scaffold0025 (169-233)||(22351-22415)
[»] scaffold0508 (3 HSPs)
scaffold0508 (146-282)||(362-503)
scaffold0508 (228-282)||(286-338)
scaffold0508 (155-223)||(361-429)
[»] scaffold0119 (1 HSPs)
scaffold0119 (144-223)||(18055-18135)


Alignment Details
Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 326036 - 325912
Alignment:
Q  5 ccttcaattcaattcacggtggcagtgacagtggcggtggtggtctggcggaggaaaccccttcttcgatctcgttttaaatttcaactttaaacgattc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  326036 ccttcaattcaattcacggtggcagtgacagtggcggtggtggtctggcggaggaaaccccttcttcgatctcgttttaaatttcaactttaaacgattc 325937  T
Q  105 gtttcattacgaaaatatacctcaa 129  Q
    |||||||||||||||||||| ||||    
T  325936 gtttcattacgaaaatatacttcaa 325912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 44426333 - 44426194
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctc-tattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||| | |||||||| ||| |||||||||||| || |||||||||||||||    
T  44426333 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccccctattttaaaactcggaattttaccccccctatttttattgattc 44426234  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44426233 tggattttgcctcccctattttaaaactcggaattttacc 44426194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 2940837 - 2940699
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||| ||| |||||||||||| |  ||||||||||| ||||    
T  2940837 ggcttaaatgcaattttacccctcctattttgattgaatctgaattttatcccactattttaaaactcggaattttaccccctctatttttattggttct 2940738  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2940737 ggattttgcctcccctattttaaaactcggaattttacc 2940699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 34788824 - 34788962
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| ||| |||||||||||| |  ||||||||||||||||    
T  34788824 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttacccccctattttaaaactcggaattttaccccctctatttttattgattct 34788923  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||||||||||||||| |||| |||||||||||    
T  34788924 ggattttgcctcccctattttagaacttggaattttacc 34788962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 19974689 - 19974828
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctc-tattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||| | |||||||| ||| ||||||||||||  | |||||||||||||||    
T  19974689 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccccctattttaaaactcggaattttacccctcctatttttattgattc 19974788  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  19974789 tggattttgccttccctattttaaaactcggaattttacc 19974828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 36067746 - 36067607
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctc-tattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||| ||| ||| |||||||| ||| |||||||||||| |  |||||||||||||||    
T  36067746 ggcttaaatgcaattttaccccccctattttaattgaatctgaattttacctctcctattttaaaactcggaattttaccccctctatttttattgattc 36067647  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||||||||||||||||||| |||| |||||||||||    
T  36067646 tggattttgcctcccctattttagaacttggaattttacc 36067607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 31076120 - 31076259
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccct-ctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  31076120 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttacccctcctattttaaaactcggaattttaccccctctattttgattgaatc 31076219  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     |||||||||| ||| ||||||||||||||||||||||||    
T  31076220 gggattttgccccccttattttaaaactcggaattttacc 31076259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 31076842 - 31076703
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctc-tattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||| | |||||||| | | |||||||||||| |  |||||||||||||||    
T  31076842 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccccctattttaaaattcggaattttaccccctctatttttattgattc 31076743  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||||||||||||||||||| |||| | |||||||||    
T  31076742 tggattttgcctcccctattttagaacttgaaattttacc 31076703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 22962698 - 22962559
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctc-tattttaatacttggaattttacccgccttatttttattgattc 242  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||| ||||| | |||||||| |||||||||||||||| |  |||||| ||||| ||    
T  22962698 ggcttaaatgcaattttnccccccctattttgattgaatctgaattttaccccccctattttaaaacttggaattttaccccctctattttgattgaatc 22962599  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     |||||||||| ||| ||||||||||||||||||||||||    
T  22962598 gggattttgccccccttattttaaaactcggaattttacc 22962559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 144 - 280
Target Start/End: Original strand, 32525213 - 32525350
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccc-tctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||| |||  ||||||||||||||||||||||| ||||| |||||||||| | | ||||||||||||    ||||||||||| |||    
T  32525213 ggcttaaatgcaattttatcccctctattttgattgaatctgaattttaccccctctattttaaaattcggaattttaccccttctatttttattggttc 32525312  T
Q  243 tggattttgcctcccctattttaaaactcggaatttta 280  Q
    |||||||||||||||||||||||||||| |||||||||    
T  32525313 tggattttgcctcccctattttaaaacttggaatttta 32525350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 2940060 - 2940199
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccc-tctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| ||||| |||||||||| | | |||||||||||| |  || ||| ||||| ||    
T  2940060 ggcttaaatgcaattttaccccctctattttgattgaatctgaattttaccccctctattttaaaattcggaattttaccccctctaatttgattgaatc 2940159  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     |||||||||||||| ||||||||||||||||||||||||    
T  2940160 gggattttgcctcccttattttaaaactcggaattttacc 2940199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 32525930 - 32525792
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaa-cccctctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| | |||| ||||||||| |||||||||||||||| |  |||||| ||||| ||    
T  32525930 ggcttaaatgcaattttacccctc-tattttgattgaatctgaattttatcccccctattttaaaacttggaattttaccccctctattttgattgaatc 32525832  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     ||||||||||  || ||||||||||||||||||||||||    
T  32525831 gggattttgccctccatattttaaaactcggaattttacc 32525792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 38816151 - 38816015
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| ||| |||||||||||| |  |||||| ||||| ||     
T  38816151 ggcttaaatgcaattttacccc-cctattttgattgaatctgaattttacccccctattttaaaactcggaattttaccccctctattttgattgaatcg 38816053  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||| || ||| ||||||||||||||||||||||||    
T  38816052 ggattttacc-cccttattttaaaactcggaattttacc 38816015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 36067059 - 36067198
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccct-ctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||| ||||||||||  | |||||||||||||||||||||| |||||| ||||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  36067059 ggcttaaatgtaattttaccctccatattttgattgaatctgaattttaccccttctattttaaaactcggaattttaccccctctattttgattgaatc 36067158  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     |||||||||| ||| ||||||||||||||||||||||||    
T  36067159 gggattttgccccccttattttaaaactcggaattttacc 36067198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 44425626 - 44425764
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctct-attttaatacttggaattttacccgccttatttttattgattc 242  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| || ||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  44425626 ggcttaaatgcaattttaccc-tcctattttgattgaatctgaattttaccccccttattttaaaactcggaattttaccccctctattttgattgaatc 44425724  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     | |||||||| ||| ||||||||||||||||||||||||    
T  44425725 ggaattttgccccccttattttaaaactcggaattttacc 44425764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 34789366 - 34789229
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctc-tattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||| ||  | |||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  34789366 ggcttaaatgcaattttatcctccatattttgattgaatctgaattttacccctcctattttaaaactcggaattttaccctc--tattttgattgaatc 34789269  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     |||||||||| ||| ||||||||||||||||||||||||    
T  34789268 gggattttgccccccttattttaaaactcggaattttacc 34789229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 275
Target Start/End: Complemental strand, 39318267 - 39318136
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    ||||||| |||||||||| ||| | |||||||||||||| || |||| ||||| ||||||||| ||| |||||||||||| | ||||||| || ||||||    
T  39318267 ggcttaagtgcaattttatcccccttattttgattgaatttggattttacccccctattttaaaactcggaattttaccccctttattttgatcgattct 39318168  T
Q  244 ggattttgcctcccctattttaaaactcggaa 275  Q
     ||||||||||||||||||| |||||||||||    
T  39318167 agattttgcctcccctatttaaaaactcggaa 39318136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 40831443 - 40831308
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    |||||||||||| |||||||| ||||||||||||| ||| ||||||| |||||  |||||||| |||| ||||||||||  || |||||| |||||||||    
T  40831443 ggcttaaatgcagttttaccc-tcctattttgattaaatttgaattttacccccttattttaaaacttagaattttacctcccctattttgattgattct 40831345  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    | |||||||  ||||||||||||||||||||||||||||    
T  40831344 gaattttgc--cccctattttaaaactcggaattttacc 40831308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 193 - 280
Target Start/End: Original strand, 42158417 - 42158504
Alignment:
Q  193 cccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaatttta 280  Q
    |||| ||||||||| ||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42158417 cccccctattttaaaactcggaattttaccccccctatttttattgattctggattttgcctcccctattttaaaactcggaatttta 42158504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 19975407 - 19975269
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||| | ||||||||| ||| |||||||||||  |  |||||| ||||| ||     
T  19975407 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttacctccctattttaaaactcggaattttacctcctctattttgattgaatcg 19975308  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    | |||||||| ||  |||||||||||||| |||||||||    
T  19975307 gaattttgccccctttattttaaaactcgaaattttacc 19975269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 145 - 282
Target Start/End: Complemental strand, 42159007 - 42158870
Alignment:
Q  145 gcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattctg 244  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||| || ||| |||||||||||  |  |||||| ||||| || |    
T  42159007 gcttaaatgcaattttaccccccctattttgattgaatctgaattttacccccctatttcaaaactcggaattttacctcctctattttgattgaatcgg 42158908  T
Q  245 gattttgcctcccctattttaaaactcggaattttacc 282  Q
     |||||||| ||  |||||||||||||| |||||||||    
T  42158907 aattttgccccctttattttaaaactcgaaattttacc 42158870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 198 - 282
Target Start/End: Complemental strand, 2940723 - 2940639
Alignment:
Q  198 ctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||||| ||| |||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2940723 ctattttaaaactcggaattttaccccctctatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 2940639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 19057962 - 19058100
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaac-ccctctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||| ||||||| | |||||||||||||||| || |||| || ||||||||||||| |||  |||||||| || ||| ||||| ||||||||    
T  19057962 ggcttaaatgcagttttacctcccctattttgattgaatttggattttactccctctattttaaaactaagaattttatccccct-attttgattgattc 19058060  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
    || |||||||| ||| ||||||||||||||||||||||||    
T  19058061 tgaattttgccccccttattttaaaactcggaattttacc 19058100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 170 - 282
Target Start/End: Original strand, 39317589 - 39317701
Alignment:
Q  170 attttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaac 269  Q
    ||||||||||||| |||||||  |||| ||||||||| |||||||||||||||| |  |||||| |||||||||||||||| || ||| |||||||||||    
T  39317589 attttgattgaatttgaattttgcccccctattttaaaacttggaattttaccccctctattttgattgattctggattttaccccccttattttaaaac 39317688  T
Q  270 tcggaattttacc 282  Q
    | | |||||||||    
T  39317689 ttgtaattttacc 39317701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 233
Target Start/End: Original strand, 22961773 - 22961863
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaattt-aacccctctattttaatacttggaattttacccgccttatttt 233  Q
    |||||||||||||||||||||| || ||||||||||||||||||||| | |||| ||||||||| ||| |||||||||||| |||||||||    
T  22961773 ggcttaaatgcaattttacccccccgattttgattgaatctgaatttcaccccccctattttaaaactcggaattttaccccccttatttt 22961863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 282
Target Start/End: Original strand, 32130382 - 32130464
Alignment:
Q  198 ctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||||| ||| |||||||||||| |  |||||| ||||||||| |||||||||||||||||||||||||| |||||||||||    
T  32130382 ctattttaaaactcggaattttaccccc--tattttgattgattctagattttgcctcccctattttaaaacttggaattttacc 32130464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 282
Target Start/End: Original strand, 11823555 - 11823685
Alignment:
Q  148 taaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattctggat 247  Q
    |||||||| ||||||| |||||||||||||||||| |  |||||  ||| ||||||||||||| ||||||||| || |   ||||| ||||| | |||||    
T  11823555 taaatgcagttttacctctcctattttgattgaat-tagattta--ccccctattttaatactcggaattttatcccctcaattttgattgaatttggat 11823651  T
Q  248 tttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||| ||| ||||||||||||||||||||||||    
T  11823652 tttgcc-cccttattttaaaactcggaattttacc 11823685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 38815461 - 38815545
Alignment:
Q  144 ggcttaaatgcaattttacccctcc-----tattttgattgaatctgaatttaacccctctattttaatacttggaattttaccc 223  Q
    |||||||||||||||||||||| ||     |||||||||||||| |||||||  |||| ||||||||| ||||||||||||||||    
T  38815461 ggcttaaatgcaattttacccccccacccctattttgattgaatttgaattttgcccccctattttaaaacttggaattttaccc 38815545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 1859091 - 1858955
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    ||||||| |||| |||||||||  ||||||||||||||| |  ||||   ||| ||||||||| ||| |||||||||||     |||||| |||||||||    
T  1859091 ggcttaagtgcagttttacccccactattttgattgaatttagattttgtccc-ctattttaaaactcggaattttacctcttctattttgattgattct 1858993  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||| || ||||||||||||||||  ||||||||||    
T  1858992 ggattttacc-cccctattttaaaactttgaattttacc 1858955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 282
Target Start/End: Original strand, 1858496 - 1858579
Alignment:
Q  198 ctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||||| ||| |||||||||||| |  |||||| ||||| | ||||||||||| ||  ||||||||||||||||||||||||    
T  1858496 ctattttaaaactcggaattttaccccctctattttgattgaatttggattttgcc-cctatattttaaaactcggaattttacc 1858579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 1859022 - 1858954
Alignment:
Q  155 aattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttaccc 223  Q
    ||||||||| || ||||||||||||| |||| |||| ||||| ||||||||| |||| |||||||||||    
T  1859022 aattttacctcttctattttgattgattctggattttacccccctattttaaaactttgaattttaccc 1858954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 39318256 - 39318189
Alignment:
Q  214 aattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||| || ||||||||| ||||| | |||||||| || ||||||||||||||||||||||||||||    
T  39318256 aattttatcccccttattttgattgaatttggattttacc-cccctattttaaaactcggaattttacc 39318189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 42952376 - 42952511
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    ||||||| |||| ||||||||   ||||||||||||||| || ||||  |||  |||| |||| ||| ||||||||| || ||| ||||| |||||||||    
T  42952376 ggcttaagtgcagttttaccct--ctattttgattgaatttggattttgccctcctatcttaaaactcggaattttatccccct-attttgattgattct 42952472  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
     ||||||| ||  |  |||||||||||||||||||||||    
T  42952473 agattttgactatcgcattttaaaactcggaattttacc 42952511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 282
Target Start/End: Original strand, 22961784 - 22961852
Alignment:
Q  214 aattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||| ||  ||||| ||||| |||| ||||  || ||||||||||||||||||||||||||||    
T  22961784 aattttacccccccgattttgattgaatctgaatttcaccccccctattttaaaactcggaattttacc 22961852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 40831374 - 40831307
Alignment:
Q  155 aattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttaccc 223  Q
    ||||||||| | |||||||||||||| |||||||||  |||| ||||||||| ||| ||||||||||||    
T  40831374 aattttacctcccctattttgattgattctgaattttgcccc-ctattttaaaactcggaattttaccc 40831307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 1858512 - 1858579
Alignment:
Q  155 aattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacc 222  Q
    |||||||||||  ||||||||||||||| || ||||  ||||| |||||||| ||| |||||||||||    
T  1858512 aattttaccccctctattttgattgaatttggattttgcccctatattttaaaactcggaattttacc 1858579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 44272948 - 44273002
Alignment:
Q  228 tatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||| | ||| |||| ||||| |||||| ||||||||||||||||||||||||    
T  44272948 tattttgactgaatctgaattttacctcccttattttaaaactcggaattttacc 44273002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 44425696 - 44425765
Alignment:
Q  155 aattttacccctcctattttgattgaatctgaatttaacccctct-attttaatacttggaattttaccc 223  Q
    |||||||||||  |||||||||||||||| ||||||  |||| || ||||||| ||| ||||||||||||    
T  44425696 aattttaccccctctattttgattgaatcggaattttgccccccttattttaaaactcggaattttaccc 44425765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 1294138 - 1294218
Alignment:
Q  144 ggcttaaatgcaatttt-acccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttaccc 223  Q
    |||||||||||||||||  |||| |||||||||| || ||| | |||| ||||| ||||||||| ||| | ||||||||||    
T  1294138 ggcttaaatgcaattttgcccccccctattttgactgtatcgggatttcacccccctattttaaaactcgaaattttaccc 1294218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 39317633 - 39317701
Alignment:
Q  155 aattttacccctcctattttgattgaatctgaatttaacccctc-tattttaatacttggaattttacc 222  Q
    |||||||||||  ||||||||||||| |||| |||| ||||| | |||||||| ||||| |||||||||    
T  39317633 aattttaccccctctattttgattgattctggattttaccccccttattttaaaacttgtaattttacc 39317701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 33222011 - 33222150
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctc-tattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||| | ||||||||||||||||    
T  33222011 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttacccctcctattttaaaactcggaattttaccccctttatttttattgattc 33222110  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33222111 tggattttgcctcccctattttaaaactcggaattttacc 33222150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 38853222 - 38853086
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| ||| |||||||||||| || ||||||||||||||||    
T  38853222 ggcttaaatgcaattttacccc-cctattttgattgaatctgaattttacccc-ctattttaaaactcggaattttaccccccctatttttattgattct 38853125  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  38853124 ggattttgccttccctattttaaaactcggaattttacc 38853086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 38929648 - 38929510
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    |||||||||||||||||||||| | |||||||||||||||||||||| |||||| |||||||| | | |||||||||||| |  |||||||||||| ||     
T  38929648 ggcttaaatgcaattttaccccccttattttgattgaatctgaattttacccctttattttaaaattcggaattttaccccctctatttttattgaatcg 38929549  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||| ||| ||| ||||||||||||||||||||||||    
T  38929548 ggatttcgccccccttattttaaaactcggaattttacc 38929510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 38929015 - 38929154
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctc-tattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||| |||||  ||||||||||||||| ||||||| ||||| | |||||||| |||  ||||||||||| |  ||||||||||||||     
T  38929015 ggcttaaatgcaatttcaccccctctattttgattgaatatgaattttaccccccctattttaaaactcagaattttaccccctctatttttattgatta 38929114  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  38929115 tggattttgcctcccctattttaaaattcggaattttacc 38929154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 23615767 - 23615905
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    ||||||| |||||||||||||| |||||||||||||||| || ||||  |||| ||||||||| |||||||||||||||| || ||| || ||||||| |    
T  23615767 ggcttaagtgcaattttaccccccctattttgattgaatttggatttcgcccccctattttaaaacttggaattttaccccccctatattgattgatttt 23615866  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||| ||||||||| |||||| ||||||||||||||    
T  23615867 ggatttttcctcccctagtttaaatctcggaattttacc 23615905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 38852516 - 38852654
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| ||| |||||||||||| |  |||||| ||||| ||     
T  38852516 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttacccccctattttaaaactcggaattttaccccctctattttgattgaatcg 38852615  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    | |||||||| ||  |||||||||||||| |||||||||    
T  38852616 gaattttgccccctttattttaaaactcgaaattttacc 38852654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 13935172 - 13935311
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccct-ctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||| ||| || ||||||||| | ||||||||||||||    |||||| ||||| ||    
T  13935172 ggcttaaatgcaattttatccctcctattttggttgaatctgaattttaccactcctattttaaaatttggaattttaccccttctattttgattgaatc 13935271  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     |||||||| | | | ||||||||||||||||||||||||    
T  13935272 aggattttgtccctcttattttaaaactcggaattttacc 13935311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 50681199 - 50681335
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    |||||||||||| ||||| |||||||||||||||||||| || |||| ||||| ||||||||| ||| ||||| ||| || |  |||||| ||||| |||    
T  50681199 ggcttaaatgcagttttatccctcctattttgattgaatttggattttacccc-ctattttaaaactcggaatattatcccctctattttgattgaatct 50681297  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||| || |||||  |||||||||||||||||||||    
T  50681298 ggatttttcc-ccccttatttaaaactcggaattttacc 50681335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 282
Target Start/End: Complemental strand, 13935844 - 13935760
Alignment:
Q  198 ctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||||| | || |||||||| || |  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13935844 ctattttaaaatttagaattttatcccctctatttttattgattctggattttgcctcctctattttaaaactcggaattttacc 13935760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 33222723 - 33222583
Alignment:
Q  144 ggcttaaatgcaattttacccctcc-tattttgattgaatctgaatttaacccctc-tattttaatacttggaattttacccgccttatttttattgatt 241  Q
    |||||||||||||||||||||| || ||||||| || ||||||||||| ||||||| |||||||| ||| |||||||| ||| |   ||||| ||||| |    
T  33222723 ggcttaaatgcaattttacccccccctattttgtttaaatctgaattttacccctcctattttaaaactcggaatttttccccctcgattttgattgaat 33222624  T
Q  242 ctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    | | |||||||| ||| ||||||||||||||||| ||||||    
T  33222623 cggaattttgccccccttattttaaaactcggaaatttacc 33222583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 34020386 - 34020248
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacc-cctctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||| ||||| ||| |||||||||||||||| || ||||  || |||||||||||| ||| | |||||||||  |  |||||| ||||| ||    
T  34020386 ggcttaaatgcagttttatccc-cctattttgattgaatttggattttgcctcctctattttaaaactcgaaattttacctcctctattttgattgaatc 34020288  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||||||| |||  |||||||||||||||||||||||    
T  34020287 tggattttgcccccctaattttaaaactcggaattttacc 34020248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 280
Target Start/End: Complemental strand, 50681856 - 50681738
Alignment:
Q  163 ccctcctattttgattgaatctgaatttaacccctct-attttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctat 261  Q
    |||||||||||||||||||| || ||||  |  |||| ||||||| | ||||||||||||||  | |||||| ||||||| ||||||||| || ||||||    
T  50681856 ccctcctattttgattgaatttggattttgcttctcttattttaaaatttggaattttacccttcgtattttgattgattttggattttgtcttccctat 50681757  T
Q  262 tttaaaactcggaatttta 280  Q
    ||||||||| | |||||||    
T  50681756 tttaaaacttgaaatttta 50681738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 29252920 - 29252786
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    |||||||||||| | |||||||  |||| |||||||||| || ||||  |||||  ||||||| ||| ||||||||||||     ||||| ||||| |||    
T  29252920 ggcttaaatgcagtattacccc--ctatattgattgaatttggattttccccct--attttaaaactcggaattttaccccgtcaattttgattgaatct 29252825  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    | |||||||| ||  ||||||||||||||||||||||||    
T  29252824 gaattttgccccctttattttaaaactcggaattttacc 29252786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 13935243 - 13935312
Alignment:
Q  155 aattttacccctcctattttgattgaatctgaatttaacccctct-attttaatacttggaattttaccc 223  Q
    |||||||||||| |||||||||||||||| | ||||   |||||| ||||||| ||| ||||||||||||    
T  13935243 aattttaccccttctattttgattgaatcaggattttgtccctcttattttaaaactcggaattttaccc 13935312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 29252854 - 29252785
Alignment:
Q  155 aattttacccctcctattttgattgaatctgaatttaacccc-tctattttaatacttggaattttaccc 223  Q
    |||||||||||  | |||||||||||||||||||||  |||| | |||||||| ||| ||||||||||||    
T  29252854 aattttaccccgtcaattttgattgaatctgaattttgccccctttattttaaaactcggaattttaccc 29252785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 34019779 - 34019835
Alignment:
Q  228 tatttttattgattctggattttgc--ctcccctattttaaaactcggaattttacc 282  Q
    |||||| ||||| | ||||||||||  | ||||||||||||||||||||||||||||    
T  34019779 tattttgattgaatttggattttgctccccccctattttaaaactcggaattttacc 34019835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 36180950 - 36181087
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| ||| |||||||||||| || |||||||||||||| |    
T  36180950 ggcttaaatgcaattttacccc-cctattttgattgaatctgaattttacccccctattttaaaactcggaattttaccccccctatttttattgattat 36181048  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36181049 ggattttgcctcccctattttaaaactcggaattttacc 36181087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 38781938 - 38781801
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctct-attttaatacttggaattttacccgccttatttttattgattc 242  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||| ||||| || ||||||| ||| |||||||||||| |  |||||||||||||||    
T  38781938 ggcttaaatgcaattttacc--ttctattttgattgaatctgaattttaccccccttattttaaaactcggaattttaccccctctatttttattgattc 38781841  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  38781840 tggattttgcctcccctattttaaaactcgaaattttacc 38781801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 144 - 281
Target Start/End: Original strand, 37707332 - 37707469
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaaccc-ctctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||| | ||||||||| ||| |||||||||||| | ||||||| ||||| ||    
T  37707332 ggcttaaatgcaattttacccc-cctattttgattgaatctgaattttaccctccctattttaaaactcggaattttaccccctttattttgattgaatc 37707430  T
Q  243 tggattttgcctcccctattttaaaactcggaattttac 281  Q
     |||||||||||||| |||||||||||||||||||||||    
T  37707431 gggattttgcctcccttattttaaaactcggaattttac 37707469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 38781234 - 38781373
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctc-tattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||| | |||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  38781234 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccccctattttaaaactcggaattttaccccctctattttgattgaatc 38781333  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     |||||||||| ||| ||||||||||||||||||||||||    
T  38781334 gggattttgccccccatattttaaaactcggaattttacc 38781373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 150 - 282
Target Start/End: Original strand, 764391 - 764523
Alignment:
Q  150 aatgcaattttacccctcctattttgattgaatctgaa-tttaacccctctattttaatacttggaattttacccgccttatttttattgattctggatt 248  Q
    |||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||| | | |||||||||||| |  |||||||||||||||||||||    
T  764391 aatgcaattttaccccccctattttgattgaatctgaattttatcccctctattttaaaattcggaattttaccccctctatttttattgattctggatt 764490  T
Q  249 ttgcctcccctattttaaaactcggaattttacc 282  Q
    ||  ||| ||||||||||||||||||||||||||    
T  764491 tt-tctctcctattttaaaactcggaattttacc 764523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 28967931 - 28967792
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaa-tttaacccctctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||| |||| ||||||||| | | |||||||||||| |  |||||| ||||| ||    
T  28967931 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccccctattttaaaattcggaattttaccccctctattttgattgaatc 28967832  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     |||||||||| ||| ||||||||||||||||||||||||    
T  28967831 gggattttgccccccttattttaaaactcggaattttacc 28967792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 28990425 - 28990565
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaa--cccctctattttaatacttggaattttacccgccttatttttattgatt 241  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |  |||| ||||||||| | | |||||||||||| |  |||||| ||||| |    
T  28990425 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttacccccccctattttaaaattcggaattttaccccctctattttgattgaat 28990524  T
Q  242 ctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    | |||||||||| ||| ||||||||||||||||||||||||    
T  28990525 cgggattttgccccccttattttaaaactcggaattttacc 28990565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 28936955 - 28937094
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaa-tttaacccctctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||| |||| ||||||||| | | |||||||||||| |  |||||| ||||| ||    
T  28936955 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccccctattttaaaattcggaattttaccccctctattttgattgaatc 28937054  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     |||||||||| ||| |||||||||||| |||||||||||    
T  28937055 gggattttgccccccttattttaaaacttggaattttacc 28937094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 147 - 282
Target Start/End: Complemental strand, 765093 - 764958
Alignment:
Q  147 ttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattctgga 246  Q
    ||||||||||||||| ||  | |||||||||||||||||||||| ||||| ||||||||| | | |||||||||||| |  |||||| ||||| || |||    
T  765093 ttaaatgcaattttatcctccttattttgattgaatctgaattttacccccctattttaaaattcggaattttaccccctctattttgattgaatcggga 764994  T
Q  247 ttttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||| ||| |||||||||| |||||||||||||    
T  764993 ttttgccccccttattttaaaattcggaattttacc 764958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 282
Target Start/End: Original strand, 22201767 - 22201901
Alignment:
Q  148 taaatgcaattttacccctcctattttgattgaatctgaatttaac-ccctctattttaatacttggaattttacccgccttatttttattgattctgga 246  Q
    ||||||||||||||||||  ||||||||||||||||||||||| || ||| ||||||||| | | |||||||||||| |  |||||| ||||| || |||    
T  22201767 taaatgcaattttaccccctctattttgattgaatctgaattttactccccctattttaaaattcggaattttaccccctctattttgattgaatcggga 22201866  T
Q  247 ttttgcctcccctattttaaaactcggaattttacc 282  Q
    |||| || ||| ||||||||||||||||||||||||    
T  22201867 ttttacc-cccttattttaaaactcggaattttacc 22201901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 193 - 280
Target Start/End: Complemental strand, 9513759 - 9513672
Alignment:
Q  193 cccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaatttta 280  Q
    ||||| |||||||| ||| ||||||| ||||  | |||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  9513759 cccctatattttaaaactcggaatttaaccccacctattttgattgattctggattttgtctcccctattttaaaactcggaatttta 9513672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 28967229 - 28967305
Alignment:
Q  146 cttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttaccc 223  Q
    ||||||||||||||||||||  |||||||||||||||||||||||  |||| ||||||||| ||| ||||||||||||    
T  28967229 cttaaatgcaattttaccccctctattttgattgaatctgaattttgcccc-ctattttaaaactcggaattttaccc 28967305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 14036666 - 14036746
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctc-tattttaatacttggaattttaccc 223  Q
    |||||||||||||||||||||| ||||||||||||||||| | ||||  |||||| |||||||| ||| ||||||||||||    
T  14036666 ggcttaaatgcaattttaccccccctattttgattgaatcgggattttgcccctcttattttaaaactcggaattttaccc 14036746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 28937653 - 28937573
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaa-tttaacccctctattttaatacttggaattttaccc 223  Q
    ||||||||||||||||||||||  |||||||||||||||||||| |||  |||| ||||||||| ||| ||||||||||||    
T  28937653 ggcttaaatgcaattttaccccctctattttgattgaatctgaattttgccccccctattttaaaactcggaattttaccc 28937573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 28991120 - 28991040
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaa-tttaacccctctattttaatacttggaattttaccc 223  Q
    ||||||||||||||||||||||  |||||||||||||||||||| |||  |||| ||||||||| ||| ||||||||||||    
T  28991120 ggcttaaatgcaattttaccccctctattttgattgaatctgaattttgccccccctattttaaaactcggaattttaccc 28991040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 282
Target Start/End: Original strand, 9513162 - 9513277
Alignment:
Q  167 cctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaa 266  Q
    |||||||||||||||| || ||||   |||  |||||||| ||| |||||||||||| |  |||||| ||||| | ||||||||||| ||| ||||||||    
T  9513162 cctattttgattgaatttggattttgtccccttattttaaaactcggaattttaccccctctattttgattgaatttggattttgccccccttattttaa 9513261  T
Q  267 aactcggaattttacc 282  Q
    ||||| ||||||||||    
T  9513262 aactcagaattttacc 9513277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 22202454 - 22202381
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaatttta 220  Q
    ||||||||||||||||||||||  ||| ||||||||||||||||||| ||||| ||||||||| ||| |||||||||    
T  22202454 ggcttaaatgcaattttacccc--ctactttgattgaatctgaattttacccc-ctattttaaaactcggaatttta 22202381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 28937642 - 28937574
Alignment:
Q  214 aattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||| |  |||||| ||||| |||| |||||||| ||||||||||||||||||||||||||||    
T  28937642 aattttaccccctctattttgattgaatctgaattttgccccccctattttaaaactcggaattttacc 28937574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 28991109 - 28991041
Alignment:
Q  214 aattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||| |  |||||| ||||| |||| |||||||| ||||||||||||||||||||||||||||    
T  28991109 aattttaccccctctattttgattgaatctgaattttgccccccctattttaaaactcggaattttacc 28991041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 282
Target Start/End: Original strand, 14036677 - 14036745
Alignment:
Q  214 aattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||| || |||||| ||||| || |||||||||| | | ||||||||||||||||||||||||    
T  14036677 aattttaccccccctattttgattgaatcgggattttgcccctcttattttaaaactcggaattttacc 14036745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 282
Target Start/End: Original strand, 28967238 - 28967304
Alignment:
Q  214 aattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||| |  |||||| ||||| |||| ||||||||  |||||||||||||||||||||||||||    
T  28967238 aattttaccccctctattttgattgaatctgaattttgcc--ccctattttaaaactcggaattttacc 28967304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 22201834 - 22201902
Alignment:
Q  155 aattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttaccc 223  Q
    |||||||||||  |||||||||||||||| | |||| |||||  |||||||| ||| ||||||||||||    
T  22201834 aattttaccccctctattttgattgaatcgggattttacccccttattttaaaactcggaattttaccc 22201902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 282
Target Start/End: Original strand, 37707343 - 37707410
Alignment:
Q  214 aattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||| ||| ||||| ||||| |||| ||||| ||  |||||||||||||||||||||||||||    
T  37707343 aattttacccccct-attttgattgaatctgaattttaccctccctattttaaaactcggaattttacc 37707410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 32825045 - 32825184
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccc-tctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    ||||||| |||| |||| |||| | ||||||||  ||||| |||||| ||||| |||||||||| ||| |||||||||||| ||  ||||    |  |||    
T  32825045 ggcttaagtgcagttttgccccccgtattttgacagaatcggaattttaccccctctattttaaaactcggaattttacccccccaatttaatgtttttc 32825144  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
    || |||||| | |||||||||||||| || ||||||||||    
T  32825145 tgaattttggcccccctattttaaaaatctgaattttacc 32825184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 37707956 - 37707881
Alignment:
Q  145 gcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttaccc 223  Q
    ||||||||  |||||||||| ||||||||||| ||||||||||||| || |  ||||||||| ||| ||||||||||||    
T  37707956 gcttaaatataattttaccc-tcctattttgagtgaatctgaattttactc--ctattttaaaactcggaattttaccc 37707881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 28937026 - 28937095
Alignment:
Q  155 aattttacccctcctattttgattgaatctgaatttaacccctct-attttaatacttggaattttaccc 223  Q
    |||||||||||  |||||||||||||||| | ||||  |||| || ||||||| ||||||||||||||||    
T  28937026 aattttaccccctctattttgattgaatcgggattttgccccccttattttaaaacttggaattttaccc 28937095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 14786296 - 14786260
Alignment:
Q  246 attttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||| || ||||||||||||||||||||||||||||    
T  14786296 attttaccccccctattttaaaactcggaattttacc 14786260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 17609373 - 17609338
Alignment:
Q  243 tggattttgcctcccctattttaaaactcggaatttt 279  Q
    ||||||||||| |||||||||||||||||||||||||    
T  17609373 tggattttgcc-cccctattttaaaactcggaatttt 17609338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 1963462 - 1963600
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||| || |||   |||||||||| || ||||||||||||||||    
T  1963462 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttacccccctatttaaaaactcaaaattttaccccccctatttttattgattct 1963561  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1963562 ggattttgcctcccctattttaaaactcggaattttacc 1963600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 47378508 - 47378647
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaa-cccctctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    ||||||||||||||||||  || |||||||||||||||||||||||| | |||||||||||||| ||| |||||||||||  |  |||||||||||||||    
T  47378508 ggcttaaatgcaattttagtccccctattttgattgaatctgaattttatcccctctattttaaaactcggaattttacctcctctatttttattgattc 47378607  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  47378608 tggattttgcctcccctattttaaaactcggaattttacc 47378647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 162 - 282
Target Start/End: Complemental strand, 31902666 - 31902547
Alignment:
Q  162 cccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctat 261  Q
    |||| |||||||||||||||||| ||||| |||| |||||||||| |||||||||||||||| |  ||||||||||| ||||||||||||||||||||||    
T  31902666 ccccccctattttgattgaatctcaattttaccc-tctattttaaaacttggaattttaccccctctatttttattggttctggattttgcctcccctat 31902568  T
Q  262 tttaaaactcggaattttacc 282  Q
    |||||||||||||||||||||    
T  31902567 tttaaaactcggaattttacc 31902547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 42942160 - 42942023
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    ||||||||||||||||||| || |||||||||||||||||||||||| ||||| ||||||||| ||| |||||||||||| |  ||||||||||||||||    
T  42942160 ggcttaaatgcaattttactcc-cctattttgattgaatctgaattttacccccctattttaaaactcggaattttaccccctctatttttattgattct 42942062  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    | |||||||||||||||||||| || | | |||||||||    
T  42942061 gaattttgcctcccctattttagaatttgaaattttacc 42942023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 147 - 282
Target Start/End: Original strand, 2093921 - 2094056
Alignment:
Q  147 ttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctc-tattttaatactt-ggaattttacccgccttatttttattgattctg 244  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||| | |||||||| ||||   |||||||||| |  |||||||||||||||||    
T  2093921 ttaaatgcaattttacccc-cctattttgattgaatctgaattttaccccccttattttaa-acttcaaaattttaccccctctatttttattgattctg 2094018  T
Q  245 gattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2094019 gattttgcctcccctattttaaaactcggaattttacc 2094056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 8294428 - 8294565
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctc-tattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||| ||||| |||||||||||||||| ||||||| ||||| | |||||||| ||| ||||||||||||  || |||||||||||||     
T  8294428 ggcttaaatgcaatttaacccc-cctattttgattgaatttgaattttaccccccctattttaaaactcggaattttacccctct-atttttattgatta 8294525  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  8294526 tggatttttcctcccctattttaaaactcggaattttacc 8294565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 8295723 - 8295586
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||  |||||||| ||| |||||||||||| |  |||||| ||||| ||     
T  8295723 ggcttaaatgcaattttacccc-cctattttgattgaatctgaattttacccccttattttaaaactcggaattttaccccctctattttgattgaatca 8295625  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||| ||| |||||||||||||| |||||||||    
T  8295624 ggattttgccccccttattttaaaactcgaaattttacc 8295586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 28882318 - 28882457
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaaccc-ctctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||| | ||||||||| ||| |||||||||||| |  |||||| ||||| |     
T  28882318 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttaccctccctattttaaaactcggaattttaccccctctattttgattgaatt 28882417  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     |||||||||| ||| |||||||||||||| |||||||||    
T  28882418 gggattttgccccccttattttaaaactcgaaattttacc 28882457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 42941443 - 42941582
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctc-tattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||||||| | |||||||||||||||||||||| ||| ||| |||||||| | |||||||||||||| |  |||||| ||||| ||    
T  42941443 ggcttaaatgcaattttaccccccatattttgattgaatctgaattttacctctcttattttaaaatttggaattttaccccctctattttgattgaatc 42941542  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     | |||||||| ||| ||||||||||||||||||||||||    
T  42941543 ggaattttgccccccttattttaaaactcggaattttacc 42941582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 37399521 - 37399388
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    ||||||| |||| |||||||||  ||||||||||||||| || ||||  |||| ||||||||| ||| |||||||||||| || |||||| |||||||||    
T  37399521 ggcttaagtgcagttttacccc--ctattttgattgaatttggattttgcccccctattttaaaactcggaattttaccccccctattttgattgattct 37399424  T
Q  244 ggattttgcctcccctattttaaaactcggaatttt 279  Q
    ||||||| |||| |||||||||||||||||||||||    
T  37399423 ggattttccctctcctattttaaaactcggaatttt 37399388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 282
Target Start/End: Complemental strand, 1964159 - 1964038
Alignment:
Q  162 cccctcctattttgattgaatctgaatttaacccctc-tattttaatacttggaattttacccgccttatttttattgattctggattttgcctccccta 260  Q
    |||| |||||||||||||||||||||||| ||||| | |||||||| |||||||||||||||| |  |||||| ||||| || | |||||||| ||| ||    
T  1964159 ccccccctattttgattgaatctgaattttaccccccctattttaaaacttggaattttaccccctctattttgattgaatcagaattttgcccccctta 1964060  T
Q  261 ttttaaaactcggaattttacc 282  Q
    |||| |||||||||||||||||    
T  1964059 ttttgaaactcggaattttacc 1964038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 145 - 282
Target Start/End: Original strand, 31902038 - 31902173
Alignment:
Q  145 gcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattctg 244  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||| ||| | ||||||||| | |||||||||||||| |  |||||| ||||| || |    
T  31902038 gcttaaatgcaattttaccccttctattttgattgaatatgaattttacctc-ctattttaaaatttggaattttaccccctctattttgattgaatcgg 31902136  T
Q  245 gattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||| || ||| ||||||||| |||| |||||||||    
T  31902137 gattttacc-cccttattttaaatctcgaaattttacc 31902173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 282
Target Start/End: Complemental strand, 2094592 - 2094480
Alignment:
Q  170 attttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaac 269  Q
    ||||||||||||||||||||| ||| | ||||||||| |||  |||||||||||    |||||| ||||| || |||||||||| ||| |||||||||||    
T  2094592 attttgattgaatctgaattttacctccctattttaaaactctgaattttaccccttctattttgattgaatcgggattttgccccccttattttaaaac 2094493  T
Q  270 tcggaattttacc 282  Q
    |||||||||||||    
T  2094492 tcggaattttacc 2094480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 28883255 - 28883175
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaattt-aacccctctattttaatacttggaattttaccc 223  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| | |||| ||||||||| |||  |||||||||||    
T  28883255 ggcttaaatgcaattttaccccccctattttgattgaatctgaatttcaccccccctattttaaaactcagaattttaccc 28883175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 47379174 - 47379080
Alignment:
Q  188 tttaacccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||| |||| ||||||||| ||| |||||||||||| |  |||||| ||||| || ||||||||||  || ||||||||||||||||||||||||    
T  47379174 tttatcccccctattttaaaactcggaattttaccccctctattttgattgaatcgggattttgccctccatattttaaaactcggaattttacc 47379080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 42791790 - 42791907
Alignment:
Q  145 gcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctct-attttaatacttggaattttacccgccttatttttattgattct 243  Q
    |||||||| || |||||||||  ||||||||||||||| ||||||| || ||||| ||||| | |||  |||||||||||  |||||||| ||||| |||    
T  42791790 gcttaaatacagttttacccc--ctattttgattgaatttgaattttacacctcttattttgaaactcagaattttaccc--cttattttaattgaatct 42791885  T
Q  244 ggattttgcctcccctatttta 265  Q
    |||||||| | |||||||||||    
T  42791886 ggattttgtcccccctatttta 42791907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 282
Target Start/End: Complemental strand, 37399498 - 37399445
Alignment:
Q  228 tatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||| ||||| | ||||||||||| ||||||||||||||||||||||||||||    
T  37399498 tattttgattgaatttggattttgcc-cccctattttaaaactcggaattttacc 37399445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 28883244 - 28883176
Alignment:
Q  214 aattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||| || |||||| ||||| |||| ||||  || ||||||||||||||||| ||||||||||    
T  28883244 aattttaccccccctattttgattgaatctgaatttcaccccccctattttaaaactcagaattttacc 28883176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 2094548 - 2094479
Alignment:
Q  155 aattttacccctcctattttgattgaatctgaatttaacccctc-tattttaatacttggaattttaccc 223  Q
    |||||||||||| |||||||||||||||| | ||||  |||| | |||||||| ||| ||||||||||||    
T  2094548 aattttaccccttctattttgattgaatcgggattttgccccccttattttaaaactcggaattttaccc 2094479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 42941514 - 42941583
Alignment:
Q  155 aattttacccctcctattttgattgaatctgaatttaacccctct-attttaatacttggaattttaccc 223  Q
    |||||||||||  |||||||||||||||| ||||||  |||| || ||||||| ||| ||||||||||||    
T  42941514 aattttaccccctctattttgattgaatcggaattttgccccccttattttaaaactcggaattttaccc 42941583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 33179625 - 33179570
Alignment:
Q  167 cctattttgattgaatctgaatttaacccctctattttaatacttggaattttaccc 223  Q
    |||||||||| ||||||||||||| ||||| ||||||||| ||| ||||| ||||||    
T  33179625 cctattttgactgaatctgaattttacccc-ctattttaaaactcggaatattaccc 33179570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 42865978 - 42866114
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    |||||||||||||||||||||| | |||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |  ||||||||||||||||    
T  42865978 ggcttaaatgcaattttaccccgc-tattttgattgaatctgaattttacccc-ctattttaaaacttggaattttaccccctctatttttattgattct 42866075  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42866076 ggattttgcctcccctattttaaaactcggaattttacc 42866114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 35894832 - 35894695
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| ||| |||||||||||| |  ||||||||||||||||    
T  35894832 ggcttaaatgcaattttacccc-cctattttgattgaatctgaattttacccccctattttaaaactcggaattttaccccctctatttttattgattct 35894734  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||||||||| ||||| |||| |||||||||||    
T  35894733 ggattttgcctcccctgttttagaacttggaattttacc 35894695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 150 - 282
Target Start/End: Complemental strand, 13360452 - 13360320
Alignment:
Q  150 aatgcaattttacccctcctattttgattgaatctgaatttaacc-cctctattttaatacttggaattttacccgccttatttttattgattctggatt 248  Q
    |||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||| ||| |||||||||||| |  |||||||||||||||||||||    
T  13360452 aatgcaattttacccc-cctattttgattgaatctgaattttacctcctctattttaaaactcggaattttaccccctctatttttattgattctggatt 13360354  T
Q  249 ttgcctcccctattttaaaactcggaattttacc 282  Q
    || |||||||||||||||||||||||||||||||    
T  13360353 tttcctcccctattttaaaactcggaattttacc 13360320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 42501842 - 42501704
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaaccc-ctctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||| | ||||||||| ||| |||||||||||| |  |||||||||||||||    
T  42501842 ggcttaaatgcaattttacccc-cctattttgattgaatctgaattttacccgccctattttaaaactcggaattttaccccctctatttttattgattc 42501744  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||||||||||||||||||| |||| |||||||||||    
T  42501743 tggattttgcctcccctattttagaacttggaattttacc 42501704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 42257266 - 42257404
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| ||| |||||||||||| |  |||||| ||||| ||     
T  42257266 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttacccccctattttaaaactcggaattttaccccctctattttgattgaatcg 42257365  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  42257366 ggattttgccccccttattttaaaactcggaattttacc 42257404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 39600069 - 39599927
Alignment:
Q  144 ggcttaaatgcaatttta---cccctcctattttgattgaatctgaatttaacccctc-tattttaatacttggaattttacccgccttatttttattga 239  Q
    ||||||||||||||||||   |||||| |||||||||||||||||||||| ||||| | |||||||| ||| |||||||||||| |  ||||||||||||    
T  39600069 ggcttaaatgcaattttaacccccctcatattttgattgaatctgaattttaccccccctattttaaaactcggaattttaccccctctatttttattga 39599970  T
Q  240 ttctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  39599969 ttctggattttgcctcccctattttaaaacttggaattttacc 39599927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 43109428 - 43109567
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacc-cctctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||| || ||||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  43109428 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttacctcccctattttaaaactcggaattttaccccctctattttgattgaatc 43109527  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     |||||||||||||| ||||||||||||||||||||||||    
T  43109528 gggattttgcctcccttattttaaaactcggaattttacc 43109567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 13359772 - 13359910
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaa-cccctctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| | |||| ||||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  13359772 ggcttaaatgcaattttacccc-cctattttgattgaatctgaatttcatcccccctattttaaaactcggaattttaccccctctattttgattgaatc 13359870  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     |||||||||| ||| ||||||||||||||||||||||||    
T  13359871 gggattttgccccccttattttaaaactcggaattttacc 13359910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 35894117 - 35894256
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccct-ctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||| |||||| ||||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  35894117 ggcttaaatgcaattttatcccccctattttgattgaatctgaattttacccctcctattttaaaactcggaattttaccccctctattttgattgaatc 35894216  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     |||||||||| ||| |||||||||||| |||||||||||    
T  35894217 gggattttgccccccttattttaaaacttggaattttacc 35894256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 28864290 - 28864152
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||| |||| || ||||||  ||| |||||||||||| |  |||||| ||||| ||     
T  28864290 ggcttaaatgcaattttatccctcctattttaattgaatctgaattttacccttccattttagaactcggaattttaccccctctattttgattgaatcg 28864191  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  28864190 ggattttgccccccttattttaaaactcggaattttacc 28864152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 39599346 - 39599484
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaa-cccctctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||| | |||| ||||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  39599346 ggcttaaatgcaattttacccc-cctattttgattgaatttgaattttatcccccctattttaaaactcggaattttaccccctctattttgattgaatc 39599444  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     ||||||| || ||| ||||||||||||||||||||||||    
T  39599445 gggatttttccccccttattttaaaactcggaattttacc 39599484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 42501125 - 42501264
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccc-tctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||||||| | |||||||||||||||||||||| ||||| | |||||||| | | |||||||||||| |  |||||| ||||| ||    
T  42501125 ggcttaaatgcaattttaccccccatattttgattgaatctgaattttaccccttttattttaaaattcggaattttaccccctctattttgattgaatc 42501224  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     | |||||||| ||| ||||||||||||||||||||||||    
T  42501225 ggaattttgccccccttattttaaaactcggaattttacc 42501264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 1628840 - 1628977
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccct-ctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||||||| |||||| ||||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  1628840 ggcttaaatgcgattttaccc-tcctattttgattgaatatgaattttacccctcctattttaaaactcggaattttaccccctctattttgattgaatc 1628938  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     | |||||||| ||| ||||||||||||||||||||||||    
T  1628939 ggaattttgcc-cccttattttaaaactcggaattttacc 1628977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 145 - 282
Target Start/End: Complemental strand, 42866684 - 42866547
Alignment:
Q  145 gcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctct-attttaatacttggaattttacccgccttatttttattgattct 243  Q
    |||||||||||||||||||| | ||||||||||||||||||||||| ||||| || ||||||| |||  ||||||||||| |  |||||| ||||| ||     
T  42866684 gcttaaatgcaattttaccc-tgctattttgattgaatctgaattttaccccccttattttaaaactcagaattttaccccctatattttgattgaatcg 42866586  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||| | ||| ||||||||||||||||||||||||    
T  42866585 ggattttgtcccccttattttaaaactcggaattttacc 42866547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 144 - 233
Target Start/End: Complemental strand, 42258194 - 42258104
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaattt-aacccctctattttaatacttggaattttacccgccttatttt 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||| ||| | |||||||||| |||||||||    
T  42258194 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttcaccccccctattttaaaactcgaaattttaccccccttatttt 42258104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 144 - 233
Target Start/End: Complemental strand, 43110353 - 43110263
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaattt-aacccctctattttaatacttggaattttacccgccttatttt 233  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| | |||| ||||||||| ||| |||||||||||| |||||||||    
T  43110353 ggcttaaatgcaattttaccccccctattttgattgaatctgaatttcaccccccctattttaaaactcggaattttaccccccttatttt 43110263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 144 - 281
Target Start/End: Complemental strand, 12216266 - 12216131
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    |||||||||||||||||||| | | |||||||||||||| || ||||  |||| ||||||||| |||||||||||||||| |  |||||| ||||| |||    
T  12216266 ggcttaaatgcaattttaccac-cttattttgattgaatttggattttgcccc-ctattttaaaacttggaattttaccccctctattttgattgaatct 12216169  T
Q  244 ggattttgcctcccctattttaaaactcggaattttac 281  Q
    ||||||| || ||  |||||||||||||| ||||||||    
T  12216168 ggattttaccccctttattttaaaactcgaaattttac 12216131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 10433597 - 10433460
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaatttta-cccgccttatttttattgattc 242  Q
    ||||||| |||| ||||||||| ||| |||||||||||| || ||||  |||| ||||||||| | ||||||||| | ||| ||||||||| |||||||     
T  10433597 ggcttaagtgcagttttaccccccctgttttgattgaatttggattttgcccc-ctattttaaaatttggaatttgacccctccttattttgattgattt 10433499  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||| |||||||||||| |||||||||| ||||||||||||    
T  10433498 tgggttttgcctcccc-attttaaaacccggaattttacc 10433460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 282
Target Start/End: Original strand, 57136 - 57264
Alignment:
Q  152 tgcaattttacccctcctattttgattgaatctgaatttaaccc-ctctattttaatacttggaattttacccgccttatttttattgattctggatttt 250  Q
    |||| ||||||||| |||||||||||||||| || ||||  ||| | ||||||||| |||  ||||||||||| |  |||||| ||||||| ||||||||    
T  57136 tgcagttttacccc-cctattttgattgaatttggattttgcccaccctattttaaaactgagaattttaccccc--tattttgattgattatggatttt 57232  T
Q  251 gcctcccctattttaaaactcggaattttacc 282  Q
    | |||| ||||||||||||||||| |||||||    
T  57233 gtctcctctattttaaaactcggatttttacc 57264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 282
Target Start/End: Complemental strand, 1629491 - 1629407
Alignment:
Q  198 ctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||||| |||||||||||||||| |  |||||| ||||| |  |||||||||| ||| ||||||||||||||||||||||||    
T  1629491 ctattttaaaacttggaattttaccccctctattttgattgaattgggattttgccccccttattttaaaactcggaattttacc 1629407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 10432961 - 10433097
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaa-cccctctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    ||||||||| |||||||||||||  |||||||||||||| || ||||   |||| ||||||||| ||| ||||||| || | | ||||||| ||||| ||    
T  10432961 ggcttaaatacaattttacccct--tattttgattgaatttggattttttcccccctattttaaaactcggaatttcactccctttattttgattgaatc 10433058  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |  |||||||| ||| ||||||||||||||||||||||||    
T  10433059 taaattttgcc-cccttattttaaaactcggaattttacc 10433097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 282
Target Start/End: Original strand, 24402387 - 24402521
Alignment:
Q  145 gcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattctg 244  Q
    ||||||||||| ||||| |  |||||||||||||||||||  |||| ||||| ||||||||| ||| || |||||||||  | |||||| || |  | ||    
T  24402387 gcttaaatgcagttttatct-tcctattttgattgaatctagattttacccccctattttaaaactcggtattttaccc--catattttgatcgtatttg 24402483  T
Q  245 gattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||||| | |||||||||||| |||||||||||||    
T  24402484 gattttgcccctcctattttaaaattcggaattttacc 24402521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 28863282 - 28863358
Alignment:
Q  146 cttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttaccc 223  Q
    |||||||||||||||||||| |||||||||||||||| |||||||  |||| ||||||||| | | ||||||||||||    
T  28863282 cttaaatgcaattttacccc-cctattttgattgaatttgaatttttcccccctattttaaaattcggaattttaccc 28863358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 274
Target Start/End: Original strand, 12215579 - 12215708
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    ||||||| |||| ||||||||| | |||||| || |||| || |||   |||| || || ||| ||| |||| ||||||| ||| ||||| |||||||||    
T  12215579 ggcttaagtgcagttttaccccccttatttttatcgaatttggattgtgccccacttttataaaactcggaaatttacccccct-attttcattgattct 12215677  T
Q  244 ggattttgcctcccctattttaaaactcgga 274  Q
     ||||||||||||||||| ||||||||||||    
T  12215678 tgattttgcctcccctatgttaaaactcgga 12215708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 43110342 - 43110274
Alignment:
Q  214 aattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||| || |||||| ||||| |||| ||||  || ||||||||||||||||||||||||||||    
T  43110342 aattttaccccccctattttgattgaatctgaatttcaccccccctattttaaaactcggaattttacc 43110274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 43126696 - 43126618
Alignment:
Q  145 gcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttaccc 223  Q
    |||||| ||||||||| |||| | |||||||| | |||| | |||| ||||| ||||||||| ||||||||||||||||    
T  43126696 gcttaagtgcaattttgccccccttattttgactaaatcaggattttacccccctattttaaaacttggaattttaccc 43126618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 57755 - 57702
Alignment:
Q  229 atttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||| ||||| | ||||||||||| | ||||||||||||||||||||||||||    
T  57755 attttgattgaatttggattttgccccacctattttaaaactcggaattttacc 57702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 1628910 - 1628978
Alignment:
Q  155 aattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttaccc 223  Q
    |||||||||||  |||||||||||||||| ||||||  ||||  |||||||| ||| ||||||||||||    
T  1628910 aattttaccccctctattttgattgaatcggaattttgcccccttattttaaaactcggaattttaccc 1628978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 6346276 - 6346352
Alignment:
Q  147 ttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatact-tggaattttacc 222  Q
    |||| ||||||||| ||||||||||||||| |||||| |||||| | | | ||||||||| ||| ||||||||||||    
T  6346276 ttaagtgcaattttgcccctcctattttgactgaatcggaattttaactccctattttaaaactctggaattttacc 6346352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 31650485 - 31650406
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttaccc 223  Q
    ||||||| |||| |||| ||||  ||||||||| ||||| ||||||| ||||| |||||| || ||| ||||||||||||    
T  31650485 ggcttaagtgcagttttgccccctctattttgactgaatttgaattttacccccctatttcaaaactcggaattttaccc 31650406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 282
Target Start/End: Complemental strand, 12216245 - 12216190
Alignment:
Q  225 ccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||||| ||||| | |||||||||||  ||||||||||||||| |||||||||||    
T  12216245 ccttattttgattgaatttggattttgcc--ccctattttaaaacttggaattttacc 12216190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 35894188 - 35894257
Alignment:
Q  155 aattttacccctcctattttgattgaatctgaatttaacccctct-attttaatacttggaattttaccc 223  Q
    |||||||||||  |||||||||||||||| | ||||  |||| || ||||||| ||||||||||||||||    
T  35894188 aattttaccccctctattttgattgaatcgggattttgccccccttattttaaaacttggaattttaccc 35894257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 42501196 - 42501265
Alignment:
Q  155 aattttacccctcctattttgattgaatctgaatttaacccctct-attttaatacttggaattttaccc 223  Q
    |||||||||||  |||||||||||||||| ||||||  |||| || ||||||| ||| ||||||||||||    
T  42501196 aattttaccccctctattttgattgaatcggaattttgccccccttattttaaaactcggaattttaccc 42501265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 1629503 - 1629467
Alignment:
Q  246 attttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  1629503 attttacctcccctattttaaaacttggaattttacc 1629467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 31648410 - 31648490
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccc-tctattttaatacttggaattttaccc 223  Q
    ||||||| |||| ||||||||| | ||||||||   ||||||||||| ||||| ||||||| || |||| |||||||||||    
T  31648410 ggcttaagtgcagttttaccccccttattttgacaaaatctgaattttaccccttctatttcaaaactttgaattttaccc 31648490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 42258183 - 42258115
Alignment:
Q  214 aattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||||||  | |||||| ||||| |||| ||||  || |||||||||||||||||| |||||||||    
T  42258183 aattttacccctcctattttgattgaatctgaatttcaccccccctattttaaaactcgaaattttacc 42258115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 150 - 282
Target Start/End: Original strand, 34267747 - 34267878
Alignment:
Q  150 aatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattctggattt 249  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| ||| |||||||||||| |  ||||||||||||||||||||||    
T  34267747 aatgcaattttacccc-cctattttgattgaatctgaattttacccccctattttaaaactcggaattttaccccctctatttttattgattctggattt 34267845  T
Q  250 tgcctcccctattttaaaactcggaattttacc 282  Q
    | |||||||||||||||||||||||||||||||    
T  34267846 ttcctcccctattttaaaactcggaattttacc 34267878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 45753435 - 45753297
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| ||||||||| || |  |||||| ||||| ||     
T  45753435 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttacccctctattttaaaactcggaattttatcccctctattttgattgaatcg 45753336  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||| ||  ||||||||||||||||||||||||    
T  45753335 ggattttgccccctttattttaaaactcggaattttacc 45753297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 51928470 - 51928333
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||  ||||||||| ||| |||||||||||| |  |||||| ||||| |||    
T  51928470 ggcttaaatgcaattttacccc-cctattttgattgaatctgaattttaccctcctattttaaaactcggaattttaccccctctattttgattgaatct 51928372  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||||||  ||||||||||||| ||||||||||    
T  51928371 ggattttgcctcctttattttaaaactcagaattttacc 51928333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 34268429 - 34268291
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctc-tattttaatacttggaattttacccgccttatttttattgattc 242  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| | |||||||| ||| |||||||||||| |  |||||| ||||| |     
T  34268429 ggcttaaatgcaattttaccc-tcctattttgattgaatctgaatttcaccccccctattttaaaactcggaattttaccccctctattttgattgaatt 34268331  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     |||||||||| ||| ||||||||||||||||||||||||    
T  34268330 gggattttgccccccttattttaaaactcggaattttacc 34268291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 38739231 - 38739370
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccct-ctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||||| | | |||||||||||||||||||||| |||||| ||||||||| ||| ||||||||||||    |||||| ||||| ||    
T  38739231 ggcttaaatgcaattttacctcccatattttgattgaatctgaattttacccctcctattttaaaactcggaattttaccccttctattttgattgaatc 38739330  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     | |||||||| ||  ||||||||||||||||||||||||    
T  38739331 ggaattttgccccctttattttaaaactcggaattttacc 38739370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 50772762 - 50772899
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    |||||||||||| |||||||| ||||||||||||||||| |||||||  |||| ||||||||| ||| |||||||||||| |  |||||| || || |||    
T  50772762 ggcttaaatgcagttttaccc-tcctattttgattgaatttgaattttgcccccctattttaaaactcggaattttaccccctctattttgatagaatct 50772860  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    | |||||||| | | ||||||||||||||||||||||||    
T  50772861 gaattttgcccctcttattttaaaactcggaattttacc 50772899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 40919806 - 40919874
Alignment:
Q  213 gaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  40919806 gaattttacccccct-atttttattgattctggattttgccttccctattttaaaactcggaattttacc 40919874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 41551339 - 41551200
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaa-tttaacccctctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||| |||| ||||||||| | |  ||||||||||| |   ||||| ||||| ||    
T  41551339 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccccctattttaaaattcagaattttaccccctcaattttgattgaatc 41551240  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     | |||||||| |   |||||||||||||| |||||||||    
T  41551239 ggaattttgccccatttattttaaaactcgaaattttacc 41551200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 38739920 - 38739859
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaa-tttaacccctctatttt 204  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||    
T  38739920 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccctctatttt 38739859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 45752778 - 45752858
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaa-tttaacccctctattttaatacttggaattttaccc 223  Q
    ||||||||||||||||||||||  |||||||||||||||||||| |||  |||| ||||||||| ||| ||||||||||||    
T  45752778 ggcttaaatgcaattttaccccctctattttgattgaatctgaattttgccccccctattttaaaactcggaattttaccc 45752858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 38739879 - 38739810
Alignment:
Q  213 gaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||||||| |  |||||||||||||||| ||||||||||||||||||||| || | |||||||||||    
T  38739879 gaattttaccccctctatttttattgattctagattttgcctcccctattttagaatttggaattttacc 38739810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 282
Target Start/End: Original strand, 45752789 - 45752857
Alignment:
Q  214 aattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||| |  |||||| ||||| |||| |||||||| ||||||||||||||||||||||||||||    
T  45752789 aattttaccccctctattttgattgaatctgaattttgccccccctattttaaaactcggaattttacc 45752857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 41550671 - 41550755
Alignment:
Q  144 ggcttaaatgcaattttac----ccctcctattttgattgaatctgaa-tttaacccctctattttaatacttggaattttaccc 223  Q
    |||||||||||||||||||    ||| ||||||||||||||||||||| |||| |||| ||||||||| | ||||||||||||||    
T  41550671 ggcttaaatgcaattttacaccccccccctattttgattgaatctgaattttaccccccctattttaaaatttggaattttaccc 41550755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 244 - 282
Target Start/End: Original strand, 40834215 - 40834253
Alignment:
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||||||||||||||||||||||||||||||||    
T  40834215 ggattttgcctcccctattttaaaactcggaattttacc 40834253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 17603728 - 17603679
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccc 196  Q
    |||||||||||||||||||||||   ||||||||||||||||||||| |||||    
T  17603728 ggcttaaatgcaattttacccct---attttgattgaatctgaattttacccc 17603679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 38739302 - 38739371
Alignment:
Q  155 aattttacccctcctattttgattgaatctgaatttaacccc-tctattttaatacttggaattttaccc 223  Q
    |||||||||||| |||||||||||||||| ||||||  |||| | |||||||| ||| ||||||||||||    
T  38739302 aattttaccccttctattttgattgaatcggaattttgccccctttattttaaaactcggaattttaccc 38739371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 50772831 - 50772900
Alignment:
Q  155 aattttacccctcctattttgattgaatctgaatttaacccctct-attttaatacttggaattttaccc 223  Q
    |||||||||||  |||||||||| ||||||||||||  ||||||| ||||||| ||| ||||||||||||    
T  50772831 aattttaccccctctattttgatagaatctgaattttgcccctcttattttaaaactcggaattttaccc 50772900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 35576715 - 35576854
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccc-tctattttaatacttggaattttacccgccttatttttat-tgatt 241  Q
    ||||||| |||| |||| |||| | ||||||||  ||||| |||||| ||||| |||||||||| ||| |||||||||||| ||| | ||| || |  ||    
T  35576715 ggcttaagtgcagttttgccccccgtattttgacagaatcggaattttaccccctctattttaaaactcggaattttaccc-cctcaatttaatgttttt 35576813  T
Q  242 ctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||| |||||| | |||||||||||||| || ||||||||||    
T  35576814 ctgaattttggcccccctattttaaaaatctgaattttacc 35576854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 40834795 - 40834732
Alignment:
Q  216 ttttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaatttta 280  Q
    |||||||| ||||||||| ||||| | ||||||||| ||||| |||||||||| |||||||||||    
T  40834795 ttttaccc-ccttattttgattgaatttggattttgtctcccgtattttaaaattcggaatttta 40834732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 40919766 - 40919825
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctatttt 204  Q
    |||||||||||| ||||||| | |||||||||||||||| ||||||| ||||| |||||||    
T  40919766 ggcttaaatgcacttttacctc-cctattttgattgaatttgaattttacccccctatttt 40919825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 282
Target Start/End: Original strand, 32554752 - 32554790
Alignment:
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  32554752 ggattttaccacccctattttaaaactcggaattttacc 32554790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 36218173 - 36218116
Alignment:
Q  167 cctattttgattgaatctgaatttaacccct-ctattttaatacttggaattttaccc 223  Q
    |||||||||| ||||||||||||| | |||| ||||||||| ||||| ||||||||||    
T  36218173 cctattttgactgaatctgaattttatccctcctattttaaaacttgaaattttaccc 36218116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 5564193 - 5564331
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctc-tattttaatacttggaattttacccgccttatttttattgattc 242  Q
    ||||||||||||||||||||||  ||||||||||||||| ||||||| ||||| | |||||||| |||  ||||||||||| ||| ||||||||||||||    
T  5564193 ggcttaaatgcaattttaccccctctattttgattgaatttgaattttaccccccctattttaaaactcagaattttacccccct-atttttattgattc 5564291  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5564292 tggattttgcctcccctattttaaaactcggaattttacc 5564331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 6505339 - 6505201
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    ||||||| |||| ||||||||| |||||||||||||| | |||||||  |||| ||||||||| ||| |||||||||||| |  ||||||||||||||||    
T  6505339 ggcttaagtgcagttttaccccccctattttgattgattttgaattttgcccccctattttaaaactcggaattttaccccctctatttttattgattct 6505240  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  6505239 ggattttgcctcccctattttaaaactcggaactttacc 6505201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 6811206 - 6811068
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||   |||||||| ||| ||||||||||||    ||||||||||||||||    
T  6811206 ggcttaaatgcaattttatccctcctattttgattgaatctgaattttaccctcttattttaaaactcggaattttaccctttctatttttattgattct 6811107  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||| || |||||||||||||||| ||||||||||    
T  6811106 ggattttgtcttccctattttaaaactcagaattttacc 6811068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 6810499 - 6810636
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| ||| |||||||||| | |  |||||| ||||| ||     
T  6810499 ggcttaaatgcaattttaccc-tcctattttgattgaatctgaattttacccccctattttaaaactcggaattttactccctctattttaattgaatcg 6810597  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  6810598 ggattttgccccccttattttaaaactcggaattttacc 6810636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 37596673 - 37596810
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    ||||||||||||||||||||||  ||||||||||||||| ||||||| ||||| ||||||||| |||||||||||||||| |  |||||| ||||| ||     
T  37596673 ggcttaaatgcaattttaccccctctattttgattgaatttgaatttcacccc-ctattttaaaacttggaattttaccccctctattttgattgaatcg 37596771  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||| | | ||||||||||||||||||||||||    
T  37596772 ggattttgcccctcttattttaaaactcggaattttacc 37596810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 6504666 - 6504804
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaaccc-ctctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| | || | ||||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  6504666 ggcttaaatgcaattttacccc-cctattttgattgaatctgaattttatcctccctattttaaaactcggaattttaccccctctattttgattgaatc 6504764  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     |||||||||| ||  ||||||||||||||||||||||||    
T  6504765 gggattttgcccccgttattttaaaactcggaattttacc 6504804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 52214588 - 52214494
Alignment:
Q  188 tttaacccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||| |||| ||||||||| ||| |||||||||||| |  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  52214588 tttaccccccctattttaaaactcggaattttaccccctctatttttattgattctggatttttcctcccctattttaaaactcggaattttacc 52214494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 162 - 282
Target Start/End: Complemental strand, 26617573 - 26617452
Alignment:
Q  162 cccctcctattttgattgaatctgaatttaacccc-tctattttaatacttggaattttacccgccttatttttattgattctggattttgcctccccta 260  Q
    |||| |||||||||||||||||||||||| ||||| |||||||||| | | |||||||||||| |  |||||| ||||| || |||||||||| ||| ||    
T  26617573 ccccccctattttgattgaatctgaattttaccccctctattttaaaattcggaattttaccccctctattttgattgaatcgggattttgcccccctta 26617474  T
Q  261 ttttaaaactcggaattttacc 282  Q
    ||||||||||||||||||||||    
T  26617473 ttttaaaactcggaattttacc 26617452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 52213914 - 52214051
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacc-cctctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    ||||||||||||||||||||  ||||||||||||||| | ||||||| ||| || ||||||||| |||||||||||||||| |  |||||| ||||| |     
T  52213914 ggcttaaatgcaattttacc--tcctattttgattgactttgaattttacctcccctattttaaaacttggaattttaccccctctattttgattgaatt 52214011  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     |||||||||| ||| |||||||||||| |||||||||||    
T  52214012 gggattttgccccccttattttaaaacttggaattttacc 52214051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 51247262 - 51247125
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccc-tctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    ||||||| |||| ||||| ||| |||||||||||||||| || ||||  |||| |||||||||| ||| | |||||||||| |  |||||| ||||||||    
T  51247262 ggcttaagtgcagttttatcccccctattttgattgaatttggattttgccccctctattttaaaactcgaaattttaccctc--tattttgattgattc 51247165  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
    || ||||||||||| ||||||||||||| |||||||||||    
T  51247164 tgaattttgcctcctctattttaaaacttggaattttacc 51247125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 282
Target Start/End: Complemental strand, 37597064 - 37596949
Alignment:
Q  167 cctattttgattgaatctgaatttaacccctc-tattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctatttta 265  Q
    |||||||| ||||||||||||||| ||||| | |||||||| |||||||||||||||| |  |||||| | ||| || | |||||||| ||| |||||||    
T  37597064 cctattttaattgaatctgaattttaccccccctattttaaaacttggaattttaccccctctattttgactgaatcggaattttgcc-cccttatttta 37596966  T
Q  266 aaactcggaattttacc 282  Q
    |||||||||||||||||    
T  37596965 aaactcggaattttacc 37596949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 282
Target Start/End: Original strand, 30456057 - 30456190
Alignment:
Q  146 cttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattctgg 245  Q
    ||||| |||| |||||||||  ||||||||||||||| || ||||  |||||||||||||| ||| |||||||  ||| || |||||| | |||||||      
T  30456057 cttaagtgcagttttacccc--ctattttgattgaatttggattttgcccctctattttaaaactcggaattt--ccctccctattttgactgattcttt 30456152  T
Q  246 -attttgcctcccctattttaaaactcggaattttacc 282  Q
     |||||||||| ||||||||||||||| ||||||||||    
T  30456153 tattttgcctctcctattttaaaactcagaattttacc 30456190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 5564862 - 5564768
Alignment:
Q  188 tttaacccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||| |||| ||||||||| ||| |||||||||||| |  |||||| ||||| || | |||||||| ||| ||||||||||||||||||||||||    
T  5564862 tttaccccccctattttaaaactcggaattttaccccctctattttgattgaatcggaattttgccccccttattttaaaactcggaattttacc 5564768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 26616908 - 26616984
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttaccc 223  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||  |||| |||| |||| ||| ||||||||||||    
T  26616908 ggcttaaatgcaattttacccc--ctattttgattgaatctgaattttgcccc-ctatgttaaaactcggaattttaccc 26616984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 14922043 - 14922123
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctct-attttaatacttggaattttaccc 223  Q
    ||||||| |||| |||| |||| | |||||||| |||||| |||||| |||||||| ||||||| ||||||||||||||||    
T  14922043 ggcttaagtgcagttttgccccccgtattttgactgaatcggaattttacccctcttattttaaaacttggaattttaccc 14922123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 264
Target Start/End: Complemental strand, 7708800 - 7708682
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    |||||||||||| |||||||  |||| |||||||||||| ||  |||   ||| ||||||||| ||| ||||||||||||  | |||||| ||||| | |    
T  7708800 ggcttaaatgcagttttacc--tcctgttttgattgaatttgggttttgtccccctattttaaaactcggaattttacccctcctattttgattgaattt 7708703  T
Q  244 ggattttgcctcccctatttt 264  Q
    ||||||| || ||||||||||    
T  7708702 ggattttaccccccctatttt 7708682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 51247180 - 51247124
Alignment:
Q  168 ctattttgattgaatctgaatttaacc-cctctattttaatacttggaattttaccc 223  Q
    ||||||||||||| |||||||||  || |||||||||||| ||||||||||||||||    
T  51247180 ctattttgattgattctgaattttgcctcctctattttaaaacttggaattttaccc 51247124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 40845491 - 40845413
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttaccc 223  Q
    ||||||| |||| |||| |||| | |||||||||| |||| |||||| ||||| ||||||||| ||| ||||||||||||    
T  40845491 ggcttaagtgcagttttgccccccgtattttgattaaatcggaattttacccc-ctattttaaaactcggaattttaccc 40845413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 5564836 - 5564767
Alignment:
Q  155 aattttacccctcctattttgattgaatctgaatttaacccctc-tattttaatacttggaattttaccc 223  Q
    |||||||||||  |||||||||||||||| ||||||  |||| | |||||||| ||| ||||||||||||    
T  5564836 aattttaccccctctattttgattgaatcggaattttgccccccttattttaaaactcggaattttaccc 5564767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 37596742 - 37596811
Alignment:
Q  155 aattttacccctcctattttgattgaatctgaatttaacccctct-attttaatacttggaattttaccc 223  Q
    |||||||||||  |||||||||||||||| | ||||  ||||||| ||||||| ||| ||||||||||||    
T  37596742 aattttaccccctctattttgattgaatcgggattttgcccctcttattttaaaactcggaattttaccc 37596811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 5564864 - 5564828
Alignment:
Q  246 attttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||| || ||||||||||||||||||||||||||||    
T  5564864 attttaccccccctattttaaaactcggaattttacc 5564828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 7710138 - 7710215
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttaccc 223  Q
    |||||||||||| |||||||  ||||||||||||||||| ||  |||   ||| ||||||||| ||| ||||||||||||    
T  7710138 ggcttaaatgcagttttacc--tcctattttgattgaatttgggttttgtccccctattttaaaactcggaattttaccc 7710215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 14922570 - 14922490
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctc-tattttaatacttggaattttaccc 223  Q
    ||||||| |||| |||| |||| ||||||||||  ||||| |||||| ||||| | |||||||| ||| ||||||||||||    
T  14922570 ggcttaagtgcagtttttccccccctattttgacagaatcggaattttaccccccctattttaaaactcggaattttaccc 14922490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 14922527 - 14922491
Alignment:
Q  246 attttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||| || ||||||||||||||||||||||||||||    
T  14922527 attttaccccccctattttaaaactcggaattttacc 14922491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 32473887 - 32473807
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctc-tattttaatacttggaattttaccc 223  Q
    ||||||| |||| |||| |||| |||||||||| ||||||  ||||| ||||| | |||||||| ||| ||||||||||||    
T  32473887 ggcttaagtgcagttttcccccccctattttgactgaatcgaaattttaccccccctattttaaaactcggaattttaccc 32473807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 32473844 - 32473808
Alignment:
Q  246 attttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||| || ||||||||||||||||||||||||||||    
T  32473844 attttaccccccctattttaaaactcggaattttacc 32473808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 37597016 - 37596948
Alignment:
Q  155 aattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttaccc 223  Q
    |||||||||||  ||||||||| |||||| ||||||  ||||  |||||||| ||| ||||||||||||    
T  37597016 aattttaccccctctattttgactgaatcggaattttgcccccttattttaaaactcggaattttaccc 37596948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 52214590 - 52214554
Alignment:
Q  246 attttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||| || ||||||||||||||||||||||||||||    
T  52214590 attttaccccccctattttaaaactcggaattttacc 52214554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 29361604 - 29361742
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctc-tattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||| | |||||||| ||| |||||||||||| | ||||||||||||||||    
T  29361604 ggcttaaatgcaattttacccc-cctattttgattgaatctgaattttaccccccctattttaaaactcggaattttaccctctttatttttattgattc 29361702  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||| || ||| ||||||||||||||| |||||||||||    
T  29361703 tggatatttccttccctattttaaaacttggaattttacc 29361742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 17192520 - 17192381
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccct-ctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||  ||| |||||||||||| |  |||||| ||||| ||    
T  17192520 ggcttaaatgcaattttacccctcctattttgattgaatctgaattttatccctcctattttagaactcggaattttaccccctctattttgattgaatc 17192421  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     |||||||||| ||| ||||||||||||| ||||||||||    
T  17192420 gggattttgccccccttattttaaaactcagaattttacc 17192381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 17335845 - 17335707
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaa-cccctctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||| | |||| ||||||||| |||  ||||||||||  |  |||||||||||||||    
T  17335845 ggcttaaatacaattttacccc-cctattttgattgaatctgaattttatcccccctattttaaaactcagaattttacctcctctatttttattgattc 17335747  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||||||||||||||||||| |||| |||||||||||    
T  17335746 tggattttgcctcccctattttagaacttggaattttacc 17335707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 17335132 - 17335270
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctc-tattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||| ||||||| |||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  17335132 ggcttaaatgcaattttacccc-cctattttaattgaatctgaattttacccctcctattttaaaactcggaattttaccccctctattttgattgaatc 17335230  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     |||||||||| ||| ||||||||||||| ||||||||||    
T  17335231 gggattttgccccccttattttaaaactcagaattttacc 17335270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 31066486 - 31066350
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaa-tttaacccctctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||| |||| ||||||||| ||| ||||||||||   || |||||| ||||| ||    
T  31066486 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttacccccactattttaaaactcggaattttac---ccctattttgattgaatc 31066390  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     |||||||||| | | ||||||||||||||||||||||||    
T  31066389 gggattttgcccctcttattttaaaactcggaattttacc 31066350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 31065797 - 31065933
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattct 243  Q
    |||||||||| ||||| ||||| | |||||||||||||| ||||||| | ||| ||||||||| | || ||||||||||| |  ||||||||||||||||    
T  31065797 ggcttaaatgtaatttcacccc-cttattttgattgaatttgaattttatccc-ctattttaaaatttagaattttaccccctctatttttattgattct 31065894  T
Q  244 ggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||| |||||||||||||||| |||||||||||||    
T  31065895 ggattttgtctcccctattttaaaattcggaattttacc 31065933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 193 - 282
Target Start/End: Complemental strand, 24814459 - 24814370
Alignment:
Q  193 cccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||| ||||||||| ||| |||||||||| | |  |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  24814459 cccccctattttaaaactcggaattttactccctctatttttattgattctggattttgcctctcctattttaaaactcggaactttacc 24814370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 6181211 - 6181131
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccc-tctattttaatacttggaattttaccc 223  Q
    |||||||||||||||||| ||| | |||||||||||||||||||||| ||||| |||||||||| ||| ||||||||||||    
T  6181211 ggcttaaatgcaattttatcccccttattttgattgaatctgaattttaccccttctattttaaaactcggaattttaccc 6181131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 32754988 - 32754851
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccc-tctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||| ||||||| ||||||||| | |||||||||||||| || ||||  |||| |||||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  32754988 ggctgaaatgcagttttacccc-cttattttgattgaatttggatttttccccctctattttaaaactcggaattttaccccctctattttgattgaatc 32754890  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||| ||| ||  |||||||||||||||||||||||    
T  32754889 tggattttccct-cctaattttaaaactcggaattttacc 32754851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 267
Target Start/End: Original strand, 15272872 - 15272997
Alignment:
Q  144 ggcttaaatgcaattttac-ccctcctattttgattgaatctgaatttaacccctc-tattttaatacttggaattttacccgccttatttttattgatt 241  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||||||| ||||| | |||||||| ||| |||||||||||| |  |||||| ||||| |    
T  15272872 ggcttaaatgcaattttacacccccctattttaattgaatctgaattttaccccccctattttaaaactcggaattttaccctctctattttgattgaat 15272971  T
Q  242 ctggattttgcctcccctattttaaa 267  Q
    | |||||| | | ||| |||||||||    
T  15272972 cgggatttcggcccccttattttaaa 15272997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 15273824 - 15273775
Alignment:
Q  147 ttaaatgcaattttacccctcctattttgattgaatctgaatttaacccc 196  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  15273824 ttaaatgcaattttaccccccctattttgattgaatctgaattttacccc 15273775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 17191850 - 17191926
Alignment:
Q  147 ttaaatgcaattttacccctcctattttgattgaatctgaatttaaccc-ctctattttaatacttggaattttaccc 223  Q
    ||||||||||||||||||| ||||||||||||||||||||||||  |||  |||||||||| ||| ||||||||||||    
T  17191850 ttaaatgcaattttacccc-cctattttgattgaatctgaattttgccctttctattttaaaactcggaattttaccc 17191926  T

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Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 282
Target Start/End: Original strand, 6180617 - 6180700
Alignment:
Q  199 tattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||| ||| |||||||||||| |  |||||| ||||| || |||||||||| | | ||||||||||||||||||||||||    
T  6180617 tattttaaaactcggaattttaccccctctattttgattgaatcgggattttgcccctcttattttaaaactcggaattttacc 6180700  T

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Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 282
Target Start/End: Complemental strand, 29362255 - 29362159
Alignment:
Q  186 aatttaacccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||| ||||| ||||||||| ||| |||||||||||| |  |||||| ||||| || ||||||| || ||  |||||||||| |||||||||||||    
T  29362255 aattttacccccctattttaaaactcggaattttaccccctctattttgattgaatcgggattttacccccgttattttaaaattcggaattttacc 29362159  T

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Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 35051795 - 35051851
Alignment:
Q  167 cctattttgattgaatctgaatttaacccctctattttaatacttggaattttaccc 223  Q
    |||||||||| |||||| |||||| ||||| ||||||||| ||||||||||||||||    
T  35051795 cctattttgactgaatcggaattttacccccctattttaaaacttggaattttaccc 35051851  T

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Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 15272898 - 15272952
Alignment:
Q  228 tatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||| ||||| |||| ||||| || ||||||||||||||||||||||||||||    
T  15272898 tattttaattgaatctgaattttaccccccctattttaaaactcggaattttacc 15272952  T

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Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 6181200 - 6181132
Alignment:
Q  214 aattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||| || ||||||||| ||||| |||| ||||| || |  |||||||||||||||||||||||||    
T  6181200 aattttatcccccttattttgattgaatctgaattttaccccttctattttaaaactcggaattttacc 6181132  T

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Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 24814483 - 24814431
Alignment:
Q  229 atttttattgattctggattttgcctcccctattttaaaactcggaattttac 281  Q
    ||||| ||||||| | |||||| || |||||||||||||||||||||||||||    
T  24814483 attttgattgattttagatttttccccccctattttaaaactcggaattttac 24814431  T

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Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 28924923 - 28924844
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttaccc 223  Q
    ||||||| |||| |||| ||||  ||||||||||||||||||||||| || || |||||| || ||| ||| ||||||||    
T  28924923 ggcttaagtgcagttttgccccctctattttgattgaatctgaattttactcccctatttcaaaactcggagttttaccc 28924844  T

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Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 282
Target Start/End: Original strand, 18051609 - 18051660
Alignment:
Q  229 atttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||| ||||||||| ||||||||||||| ||||||||||  ||||||||||||    
T  18051609 attttgattgattcttgattttgcctcccttattttaaaa--cggaattttacc 18051660  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 6180632 - 6180701
Alignment:
Q  155 aattttacccctcctattttgattgaatctgaatttaacccctc-tattttaatacttggaattttaccc 223  Q
    |||||||||||  |||||||||||||||| | ||||  |||||| |||||||| ||| ||||||||||||    
T  6180632 aattttaccccctctattttgattgaatcgggattttgcccctcttattttaaaactcggaattttaccc 6180701  T

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Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 282
Target Start/End: Original strand, 17191858 - 17191925
Alignment:
Q  214 aattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||||||| ||| ||||| ||||| |||| ||||||||    |||||||||||||||||||||||||    
T  17191858 aattttacccccct-attttgattgaatctgaattttgccctttctattttaaaactcggaattttacc 17191925  T

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Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 282
Target Start/End: Original strand, 24813843 - 24813927
Alignment:
Q  198 ctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||||| | | |||||||||||| |  |||||| ||||| || ||||||||||  |  ||||||||||||||||||| ||||    
T  24813843 ctattttaaaattcggaattttaccccctctattttaattgaatcgggattttgccctctttattttaaaactcggaattctacc 24813927  T

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Target: scaffold0341 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 7018 - 6879
Alignment:
Q  144 ggcttaaatgcaattttacccctcc-tattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    ||||||| |||| ||||||||| || |||||||||||| | |||||||  |||| ||||||||| ||| |||||||||||| |  |||||||||||||||    
T  7018 ggcttaagtgcagttttacccccccctattttgattgattttgaattttgcccccctattttaaaactcggaattttaccccctctatttttattgattc 6919  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  6918 tggattttgcctcccctattttaaaactcggaactttacc 6879  T

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Target: scaffold0341; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 6349 - 6487
Alignment:
Q  144 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttaaccc-ctctattttaatacttggaattttacccgccttatttttattgattc 242  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| | || | ||||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  6349 ggcttaaatgcaattttacccc-cctattttgattgaatctgaattttatcctccctattttaaaactcggaattttaccccctctattttgattgaatc 6447  T
Q  243 tggattttgcctcccctattttaaaactcggaattttacc 282  Q
     |||||||||| ||  ||||||||||||||||||||||||    
T  6448 gggattttgcccccgttattttaaaactcggaattttacc 6487  T

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Target: scaffold0045 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 147 - 282
Target Start/End: Original strand, 75237 - 75373
Alignment:
Q  147 ttaaatgcaattttacccctcctattttgattgaatctgaatttaacccct-ctattttaatacttggaattttacccgccttatttttattgattctgg 245  Q
    |||| |||||||||||| |||||||||||||||||| ||||||| | |||| ||||||||| | ||||||||||||   |  |||||| ||||| || ||    
T  75237 ttaattgcaattttacctctcctattttgattgaatttgaattttatccctcctattttaaaatttggaattttacttcctctattttgattgaatcggg 75336  T
Q  246 attttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||||||  || ||||||||||||||||||||||||    
T  75337 attttgccctccttattttaaaactcggaattttacc 75373  T

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Target: scaffold0025 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 282
Target Start/End: Original strand, 22269 - 22404
Alignment:
Q  146 cttaaatgcaattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttttattgattctgg 245  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||||  |||| | ||||||| ||| |||||||||| | | ||||||| ||| | |||||    
T  22269 cttaaatacaattttacccctcctattttgattcaatttgaattttgccccccaattttaaaactcggaattttactcccattattttgatttaatctgg 22368  T
Q  246 attttgcctcccctattttaaaactcggaattttacc 282  Q
    ||||| || ||  ||||||||||||||||||||||||    
T  22369 attttacc-ccattattttaaaactcggaattttacc 22404  T

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Target: scaffold0025; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 22351 - 22415
Alignment:
Q  169 tattttgattgaatctgaatttaacccctctattttaatacttggaattttacccgccttatttt 233  Q
    |||||||||| |||||| |||| |||||  |||||||| ||| |||||||||||| || ||||||    
T  22351 tattttgatttaatctggattttaccccattattttaaaactcggaattttacccaccctatttt 22415  T

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Target: scaffold0508 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 146 - 282
Target Start/End: Complemental strand, 503 - 362
Alignment:
Q  146 cttaaatgcaattttacccctcc-----tattttgattgaatctgaa-tttaacccctctattttaatacttggaattttacccgccttatttttattga 239  Q
    |||||||||||||||| ||||||     ||||||||||||||||||| |||| |||||||||||| | | | |||||||||||| |  |||||| |||||    
T  503 cttaaatgcaattttatccctccccccctattttgattgaatctgaattttaccccctctatttttaaattcggaattttaccccctctattttgattga 404  T
Q  240 ttctggattttgcctcccctattttaaaactcggaattttacc 282  Q
     |  ||||||| || ||| ||||||||||||||||||||||||    
T  403 attgggattttacc-cccttattttaaaactcggaattttacc 362  T

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Target: scaffold0508; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 286 - 338
Alignment:
Q  228 tatttttattgattctggattttgcctcccctattttaaaactcggaattttacc 282  Q
    |||||| ||||||| ||||||||||||||  ||||||||||||||||||||||||    
T  286 tattttgattgattttggattttgcctcc--tattttaaaactcggaattttacc 338  T

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Target: scaffold0508; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 429 - 361
Alignment:
Q  155 aattttacccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttaccc 223  Q
    |||||||||||  |||||||||||||||  | |||| |||||  |||||||| ||| ||||||||||||    
T  429 aattttaccccctctattttgattgaattgggattttacccccttattttaaaactcggaattttaccc 361  T

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Target: scaffold0119 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 18135 - 18055
Alignment:
Q  144 ggcttaaatgcaatttt-acccctcctattttgattgaatctgaatttaacccctctattttaatacttggaattttaccc 223  Q
    |||||||||||||||||  |||| |||||||||| || ||| | |||| ||||| ||||||||| ||| | ||||||||||    
T  18135 ggcttaaatgcaattttgcccccccctattttgactgtatcgggatttcacccccctattttaaaactcgaaattttaccc 18055  T

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