View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7623_low_16 (Length: 249)

Name: NF7623_low_16
Description: NF7623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7623_low_16
NF7623_low_16
[»] chr4 (11 HSPs)
chr4 (1-239)||(52982858-52983096)
chr4 (24-239)||(55619005-55619219)
chr4 (24-239)||(55626309-55626523)
chr4 (39-239)||(55657369-55657569)
chr4 (43-239)||(54860799-54860995)
chr4 (43-233)||(54630329-54630519)
chr4 (28-239)||(3671055-3671266)
chr4 (60-239)||(55663621-55663800)
chr4 (35-239)||(55637219-55637423)
chr4 (48-239)||(50190005-50190196)
chr4 (140-239)||(54630215-54630314)
[»] chr2 (1 HSPs)
chr2 (28-239)||(13403626-13403837)
[»] chr8 (2 HSPs)
chr8 (47-233)||(9891523-9891709)
chr8 (112-235)||(17220156-17220279)
[»] chr1 (1 HSPs)
chr1 (47-177)||(37308594-37308724)
[»] chr7 (1 HSPs)
chr7 (49-156)||(46153210-46153317)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 52982858 - 52983096
Alignment:
Q  1 cttatgtttcagatcacagtcttgtctaccatggcttggaggtagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctca 100  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52982858 cttatgtttcagatcacggtcttgtcgaccatggcttggaggtagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctca 52982957  T
Q  101 taaatttcattgttgtcatgactctgcaagttttcaatcttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  52982958 taaatttcattgttgtcatgactctgcaagttttcaatcttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctctcgtgttac 52983057  T
Q  201 aaaaccttttctccgcttctccaaccttcagaatattct 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  52983058 aaaaccttttctccgcttctccaaccttcagaatattct 52983096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 24 - 239
Target Start/End: Original strand, 55619005 - 55619219
Alignment:
Q  24 gtctaccatggcttggaggtagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgact 123  Q
    |||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||    
T  55619005 gtctaccatggcctagaggtagtgtctcatctacatcttccaaccaatatgtctcgagaattttaacagccttctcataaatttctttgttgtcatgact 55619104  T
Q  124 ctgcaagttttcaatcttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctccgcttctcca 223  Q
    |||||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  55619105 ctgcaagttttcgat-ttttccaatccctcagcatcatctatcatctgagcatacaagttgacatctcccgtgttacaaaagcttttctccgcttctcca 55619203  T
Q  224 accttcagaatattct 239  Q
    ||||| |||| |||||    
T  55619204 acctttagaaaattct 55619219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 24 - 239
Target Start/End: Original strand, 55626309 - 55626523
Alignment:
Q  24 gtctaccatggcttggaggtagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgact 123  Q
    |||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||    
T  55626309 gtctaccatggcctagaggtagtgtctcatctacatcttccaaccaatatgtctcgagaattttaacagccttctcataaatttctttgttgtcatgact 55626408  T
Q  124 ctgcaagttttcaatcttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctccgcttctcca 223  Q
    |||||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  55626409 ctgcaagttttcgat-ttttccaatccctcagcatcatctatcatctgagcatacaagttgacatctcccgtgttacaaaagcttttctccgcttctcca 55626507  T
Q  224 accttcagaatattct 239  Q
    ||||| |||| |||||    
T  55626508 acctttagaaaattct 55626523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 39 - 239
Target Start/End: Original strand, 55657369 - 55657569
Alignment:
Q  39 gaggtagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgcaagttttcaat 138  Q
    ||||||||||||||||  |||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  55657369 gaggtagtgtctcatcaacatcttccaaccaatatgtctcaagaattttaacagccttctcataaatttcattgttgtcatgactctgcaagttttcgat 55657468  T
Q  139 cttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctccgcttctccaaccttcagaatattc 238  Q
    |||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||    
T  55657469 cttttccaatccctcaacatcatctatcatctgagcatacaagttgacatctcccgtgttacaaaagcttttctccgcttctccaacctttagaaaattc 55657568  T
Q  239 t 239  Q
    |    
T  55657569 t 55657569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 43 - 239
Target Start/End: Original strand, 54860799 - 54860995
Alignment:
Q  43 tagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgcaagttttcaatcttt 142  Q
    ||||||||| |||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||| |||||||||| |||||| ||| |||||||||    
T  54860799 tagtgtctcgtcttcatcttccaaccaatatgtctcaagaattttaacagccttctcataaatttcatagttgtcatgattctgcatgttatcaatcttt 54860898  T
Q  143 tccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctccgcttctccaaccttcagaatattct 239  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||    
T  54860899 tccaatccctcagcatcctctatcatctgagcatacaagttgacatctcccgtgttaccaaagcttttctccacttctccaaccttcagaatattct 54860995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 43 - 233
Target Start/End: Complemental strand, 54630519 - 54630329
Alignment:
Q  43 tagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgcaagttttcaatcttt 142  Q
    ||||||||||||||||||||||||||||||| ||||||||||| || |||| ||||||||||||||  |||  |||||||| | ||||||||||||||||    
T  54630519 tagtgtctcatcttcatcttccaaccaatatctctcgagaattttagcagccttctcataaatttctctgtcttcatgactatccaagttttcaatcttt 54630420  T
Q  143 tccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctccgcttctccaaccttcagaa 233  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||    
T  54630419 tccaatcccttaacatcctctatcatctgagcatacaaattgacatctcccgtgttaccaaatcttttctctgcttctccaaccttcagaa 54630329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 28 - 239
Target Start/End: Original strand, 3671055 - 3671266
Alignment:
Q  28 accatggcttggaggtagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgc 127  Q
    ||||| || ||||||||| |||||| ||||||||||||||||||||||||| |||||| | ||||| |||||||||||||||| ||||||||||||||||    
T  3671055 accattgcctggaggtagcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttctcataaatttcatagttgtcatgactctgc 3671154  T
Q  128 aagttttcaatcttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctccgcttctccaacct 227  Q
    |||||| ||||||||||||||||||| || ||| |||||||| |||||||||| |||||||||||||||| ||      |||||||||||||||||||||    
T  3671155 aagtttccaatcttttccaatccctccgcgtcccctatcatcagagcatacaagttgacatctcccgtgtaaccggggtttttctccgcttctccaacct 3671254  T
Q  228 tcagaatattct 239  Q
    |||||| |||||    
T  3671255 tcagaaaattct 3671266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 60 - 239
Target Start/End: Original strand, 55663621 - 55663800
Alignment:
Q  60 cttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgcaagttttcaatcttttccaatccctcagcatc 159  Q
    |||||||||||||||||||||  ||||||||||| ||||||||||||||| ||| ||  |||||||||||||||||||||||||||||||||||| ||||    
T  55663621 cttccaaccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactctgcaagttttcaatcttttccaatccctcaacatc 55663720  T
Q  160 ctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctccgcttctccaaccttcagaatattct 239  Q
     |||||||||||||||||||| ||||||||||| |||||||||||  ||||||||||||||||||||| ||||| |||||    
T  55663721 atctatcatctgagcatacaagttgacatctccggtgttacaaaagtttttctccgcttctccaacctccagaaaattct 55663800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 35 - 239
Target Start/End: Complemental strand, 55637423 - 55637219
Alignment:
Q  35 cttggaggtagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgcaagtttt 134  Q
    |||||||||| |||||| ||||||||||  ||||||||||| || |||||| ||||||| ||||||  ||||||||||||||||||||||||||||||||    
T  55637423 cttggaggtactgtctcgtcttcatctttaaaccaatatgtttcaagaattttaacagccttctcacgaatttcattgttgtcatgactctgcaagtttt 55637324  T
Q  135 caatcttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctccgcttctccaaccttcagaat 234  Q
    |||||| | || | || ||||| ||   |||||||||| ||||||| ||||||||||||||||| | | | ||||| || |||||||||||||||||||     
T  55637323 caatctctacccaaccgtcagcgtcaggtatcatctgaacatacaagttgacatctcccgtgtttccatagcttttatcggcttctccaaccttcagaaa 55637224  T
Q  235 attct 239  Q
    |||||    
T  55637223 attct 55637219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 239
Target Start/End: Original strand, 50190005 - 50190196
Alignment:
Q  48 tctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgcaagttttcaatcttttccaa 147  Q
    ||||||||||||| | | |||||||||| || |||||| ||||||| |||||||| ||||| | ||| |||||||| |||| |||||| ||||| || ||    
T  50190005 tctcatcttcatcgttcgaccaatatgtttcaagaattttaacagccttctcatatatttcttggttatcatgactttgcaggttttctatcttgtcaaa 50190104  T
Q  148 tccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctccgcttctccaaccttcagaatattct 239  Q
    |||||||| | | ||||||||||||  |||||| ||| ||||| | |||||||    ||| |||||  ||||||||||  ||||||||||||    
T  50190105 tccctcagaaacatctatcatctgaaaatacaagttgtcatcttcagtgttacctcgcctcttctcttcttctccaacagtcagaatattct 50190196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 54630314 - 54630215
Alignment:
Q  140 ttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctccgcttctccaaccttcagaatattct 239  Q
    ||||||||||||||| |||||| |||| ||||||||||||| ||||||||||| |||||||  |  |||||||| |||||||||||||| |||| |||||    
T  54630314 ttttccaatccctcaacatcctttatcgtctgagcatacaagttgacatctccggtgttacttatgcttttctctgcttctccaacctttagaaaattct 54630215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 28 - 239
Target Start/End: Complemental strand, 13403837 - 13403626
Alignment:
Q  28 accatggcttggaggtagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgc 127  Q
    ||||| || ||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||    
T  13403837 accatcgcctggtggtagtgtctcgtcttcatcttccaaccaatatgtctcgagaattttaacagccttctcgtaaatttcattgttgtcatgactctgc 13403738  T
Q  128 aagttttcaatcttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctccgcttctccaacct 227  Q
    | ||| |||||||||||||||||||| || || |||||||||||||||||||| ||||||||||||| ||||| ||| |||||||| |||||||||| ||    
T  13403737 aggttctcaatcttttccaatccctccgcctcatctatcatctgagcatacaagttgacatctcccgcgttaccaaagcttttctctgcttctccaatct 13403638  T
Q  228 tcagaatattct 239  Q
    ||||||||||||    
T  13403637 tcagaatattct 13403626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 47 - 233
Target Start/End: Complemental strand, 9891709 - 9891523
Alignment:
Q  47 gtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgcaagttttcaatcttttcca 146  Q
    |||||| ||||||||||||||||||||||||| |||||| | ||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  9891709 gtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttcccataaatttcatagttgtcatgactctgcaagttttcaatcttttcca 9891610  T
Q  147 atccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctccgcttctccaaccttcagaa 233  Q
    |||||||||| |||||||||||| |||||||||| ||||||||||| |||| ||      ||||| |||||||||||||||||||||    
T  9891609 atccctcagcgtcctctatcatcagagcatacaagttgacatctcctgtgtaaccggggtttttccccgcttctccaaccttcagaa 9891523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 112 - 235
Target Start/End: Complemental strand, 17220279 - 17220156
Alignment:
Q  112 gttgtcatgactctgcaagttttcaatcttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttc 211  Q
    |||||||||| |||||| ||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| ||| ||||||    
T  17220279 gttgtcatgattctgcatgttatcaatcttttccaatccctcagcatcttctatcatttgagcatacaagttgacatctcccgtgttaccaaagcttttc 17220180  T
Q  212 tccgcttctccaaccttcagaata 235  Q
    ||||||||||||||||||||||||    
T  17220179 tccgcttctccaaccttcagaata 17220156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 47 - 177
Target Start/End: Original strand, 37308594 - 37308724
Alignment:
Q  47 gtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgcaagttttcaatcttttcca 146  Q
    ||||||||||| || |||||||| |||||||| |||||  | ||||| || |||||||| ||  |||||||||||||||| | ||| ||||| || ||||    
T  37308594 gtctcatcttcttcctccaaccagtatgtctcaagaatcttcacagccttttcataaatctctgtgttgtcatgactctggaggttctcaattttctcca 37308693  T
Q  147 atccctcagcatcctctatcatctgagcata 177  Q
    | ||||||||||| || |||||||| |||||    
T  37308694 acccctcagcatcatcaatcatctgggcata 37308724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 156
Target Start/End: Original strand, 46153210 - 46153317
Alignment:
Q  49 ctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgcaagttttcaatcttttccaat 148  Q
    |||||| || || |||||||| ||||||||||||||  | ||||| || |||||||| |||||||||||||||||||| | ||| ||||| || |||||     
T  46153210 ctcatcgtcttcctccaaccagtatgtctcgagaatcttcacagccttttcataaatctcattgttgtcatgactctggaggttctcaattttctccaaa 46153309  T
Q  149 ccctcagc 156  Q
    ||||||||    
T  46153310 ccctcagc 46153317  T

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