View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7623_low_19 (Length: 224)

Name: NF7623_low_19
Description: NF7623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7623_low_19
NF7623_low_19
[»] chr4 (3 HSPs)
chr4 (62-202)||(31806521-31806661)
chr4 (1-63)||(31806773-31806835)
chr4 (139-181)||(53068376-53068418)
[»] chr7 (3 HSPs)
chr7 (121-202)||(14630254-14630335)
chr7 (62-129)||(14647029-14647096)
chr7 (12-63)||(14647202-14647253)
[»] chr2 (1 HSPs)
chr2 (71-127)||(22941-22997)
[»] chr1 (1 HSPs)
chr1 (71-127)||(29381286-29381342)


Alignment Details
Target: chr4 (Bit Score: 129; Significance: 6e-67; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 62 - 202
Target Start/End: Complemental strand, 31806661 - 31806521
Alignment:
Q  62 tgccccaaacctgtgtcttttagataattcaatttggtcaaatttcccaactaagtccatattttgtatttgactaggtactgcttaaggatgccataac 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||    
T  31806661 tgccccaaacctgtgtcttttagataattcaatttggtcaaatttcccaactaagtccatattttgtatttgaataggtactgcttgaggatgtcataac 31806562  T
Q  162 tttgtaaatttacaattgaacaaggaaggaaggaaaaggat 202  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31806561 tttgtaaatttacaattgaacaaggaaggaaggaaaaggat 31806521  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 31806835 - 31806773
Alignment:
Q  1 ttgtgaattgcagaggttgtagacaaagtttgttgttgaatcaagcaatacccatcagatctg 63  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31806835 ttgtcaattgcagaggttgtagacaaagtttgttgttgaatcaagcaatacccatcagatctg 31806773  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 53068418 - 53068376
Alignment:
Q  139 gtactgcttaaggatgccataactttgtaaatttacaattgaa 181  Q
    ||||||||| |||||||||||| |||||||||||||| |||||    
T  53068418 gtactgcttgaggatgccataattttgtaaatttacagttgaa 53068376  T

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Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 14630335 - 14630254
Alignment:
Q  121 tattttgtatttgactaggtactgcttaaggatgccataactttgtaaatttacaattgaacaaggaaggaaggaaaaggat 202  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14630335 tattttgtatttgaataggtactgcttgaggatgccataactttgtaaatttacaattgaacaaggaaggaaggaaaaggat 14630254  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 14647096 - 14647029
Alignment:
Q  62 tgccccaaacctgtgtcttttagataattcaatttggtcaaatttcccaactaagtccatattttgta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14647096 tgccccaaacctgtgtcttttagataattcaatttggtcaaatttcccaactaagtccatattttgta 14647029  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 14647253 - 14647202
Alignment:
Q  12 agaggttgtagacaaagtttgttgttgaatcaagcaatacccatcagatctg 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14647253 agaggttgtagacaaagtttgttgttgaatcaagcaatacccatcagatctg 14647202  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 22997 - 22941
Alignment:
Q  71 cctgtgtcttttagataattcaatttggtcaaatttcccaactaagtccatattttg 127  Q
    ||||||||||||| |||||| | |||||||||||| | ||| |||||| ||||||||    
T  22997 cctgtgtcttttacataatttattttggtcaaattgctcaattaagtcgatattttg 22941  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 29381342 - 29381286
Alignment:
Q  71 cctgtgtcttttagataattcaatttggtcaaatttcccaactaagtccatattttg 127  Q
    ||||| ||||||| |||||| | |||||||||||| ||||| |||||| ||||||||    
T  29381342 cctgtatcttttacataatttattttggtcaaattgcccaattaagtcgatattttg 29381286  T

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