View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7623_low_2 (Length: 645)
Name: NF7623_low_2
Description: NF7623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7623_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 6 - 492
Target Start/End: Original strand, 54733057 - 54733543
Alignment:
| Q |
6 |
gtcgaagaatatacgatggatgcatggtgaaattctctgaaaaagagagtataaagagtgaagatgataacaaaatgaagttggaagagaaacaggagat |
105 |
Q |
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| T |
54733057 |
gtcgtagaataaacgatggatgcatggtgaaattctctcaaaaagagagtataaagagtgaagatgataacaaaatgaagttggaagagaaacaggagat |
54733156 |
T |
|
| Q |
106 |
aaaaacagagatgggtttggaagtgaagggatataggaggtgtcaatcggaaattgagttggtgaggggtgtgaatagtgatgatgcgaaggatcaaaga |
205 |
Q |
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| T |
54733157 |
aaaaacagagatgggtttggaagtgaagggatataggaggtgtcaatcggaaattgagttggtgaggggtgtgaatagtgatgatgcgaaggatcaaaga |
54733256 |
T |
|
| Q |
206 |
gtgttgcaaaggtgtgagagtgataatgataagagtaagaggaaaaacattgaagttgataaagagaaaaaatggagtttatatcccgaagatggaatga |
305 |
Q |
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| T |
54733257 |
gtgttgcaaaggtgtgagagtgataatgataagagtaagaggaaaaacattgaagttgataaagagaaaaaatggagtttatatcctgaagatggaatga |
54733356 |
T |
|
| Q |
306 |
gcagcgacgaatttcgtcgcaccgtggaggcattcattgcaagacaacagaagctacgaataaatgaagtacaaaccatatttattcctagctaatctgt |
405 |
Q |
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| T |
54733357 |
gcagcgacgaatttcgtcgcacggtggaggcattcattgcaagacaacggaagctacgaataaatgaagtacaaaccatatttattcctagctaatctgt |
54733456 |
T |
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| Q |
406 |
gtatgtaatttgtgtgaaaattggattgtaaactaaggttaaacctttatgtgtcttcttctgtttaatgaacaaacaactatgtga |
492 |
Q |
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| T |
54733457 |
gtatgtaatttgtttgaaaattggattgtaaactaaggttaaacctttatgtgtcttcttctgtttaatgaacaaacaactatgtga |
54733543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 518 - 628
Target Start/End: Original strand, 54733538 - 54733648
Alignment:
| Q |
518 |
atgtaaataaagattagggcaagtgagtaaataactatttggattataaacatttgagtctattaatctaattttgttgagtttcgagttagaaaacatg |
617 |
Q |
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|||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
54733538 |
atgtgaataaagattagggcaagtgagtgaataagtatttggattataaacatttgagtctattaatctaattttgttgggtttctagttagaaaacatg |
54733637 |
T |
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| Q |
618 |
gtggtgttttc |
628 |
Q |
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| T |
54733638 |
gtggtgttttc |
54733648 |
T |
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