View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7623_low_5 (Length: 440)
Name: NF7623_low_5
Description: NF7623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7623_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Complemental strand, 2699821 - 2699405
Alignment:
| Q |
18 |
gaaacgctctgcacattcgtctcgcttattctgatttaggtaaagtactaagaataccttgagttttgtttcatgtatggttctttggttttgatttcat |
117 |
Q |
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| T |
2699821 |
gaaacgctctgcacattcgtctcgcttattctgatttaggtaaagtactaagaataccttgagttttgtttcatgtatggttctttggttttgatttcat |
2699722 |
T |
|
| Q |
118 |
ttatcagtactaattg-tcctgtatcgttcttgagtaactctttcaattggactcactttagttaactaataaattaatgttatagctaattagccgaat |
216 |
Q |
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| T |
2699721 |
ttatcagtaataatttctcctgtatcgttcttgagtaactctttcaattggactcactttagttaactaataaattaatgttatagctaattagccgaat |
2699622 |
T |
|
| Q |
217 |
aacactgtcaattgaagtgtaattgttgttagagtattagttaataacaggattatatcttttgtctcgaaatacaggcgatggaggg---aatgaaaag |
313 |
Q |
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| T |
2699621 |
aacactgtcaattgaagtgtaattgttgttagagtattagtaaataacaggattatatcttttgtctcgaaatacaggcgatggagggaaaaatgaaaag |
2699522 |
T |
|
| Q |
314 |
attatgatggtgataatattaacttctctagcggggttaatttgcataggaatcattgtattgttggtatggaggtacaagagacgactcaaaggtgaaa |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2699521 |
attatgatggtgataatattaacttctctagcggggttaatttgcataggaatcattgtattgttggtatggaggtacaagagacaactcaaaggtgaaa |
2699422 |
T |
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| Q |
414 |
cattcatattcatattc |
430 |
Q |
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| T |
2699421 |
cattcatattcatattc |
2699405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 311 - 427
Target Start/End: Complemental strand, 2691829 - 2691709
Alignment:
| Q |
311 |
aagattatgatggtgataatattaacttctctagcggggttaatttgcataggaatcattgtattgttggtatggaggtacaagagacgactcaaaggtg |
410 |
Q |
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||||||||||| ||||||||||||||| | |||| |||||||| ||| ||||||| | ||||||||||||||||||||||||| | ||||||||||| |
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| T |
2691829 |
aagattatgattgtgataatattaactgttatagcagggttaatctgcctaggaatattggtattgttggtatggaggtacaagacaaaactcaaaggtg |
2691730 |
T |
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| Q |
411 |
aaa----cattcatattcata |
427 |
Q |
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||| |||||||||||||| |
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| T |
2691729 |
aaatactcattcatattcata |
2691709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 387
Target Start/End: Complemental strand, 14520956 - 14520885
Alignment:
| Q |
316 |
tatgatggtgataatattaacttctctagcggggttaatttgcataggaatcattgtattgttggtatggag |
387 |
Q |
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| T |
14520956 |
tatgattgtgattatatcaactgctgtaacagggttaatctgcctaggaatctttgtattgttggtatggag |
14520885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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