View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7623_low_6 (Length: 389)
Name: NF7623_low_6
Description: NF7623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7623_low_6 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 124933 - 124557
Alignment:
| Q |
1 |
tctaattgccataagaataatatgttgtcacatttttcagggtgatcgtattcaagtcattttgccaaatgaattcaaagatcagtttaagagtagagtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
124933 |
tctaattgccataagaataatatgttgtcacatttttcagggtgatcgtattcaagtcattttgccaaatgaattcaaagatcagtttaagagtagagtt |
124834 |
T |
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| Q |
101 |
gctgagaacactacttttactctgcaaaactttgatgttgagaaaaatgagatgaccatcaaagcaactaatcataagtttaggctggtgtttaatgctg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
124833 |
gctgagaacactacttttactctgcaaaactttgatgttgagaaaaatgagatgaccatcaaagcaactaatcataagtttaggctggtgtttaatgttg |
124734 |
T |
|
| Q |
201 |
caacaactattgatagcatcgacaaacatgacatacccaaaccaccattctgcttcaaggaatttgatatgataaagaagggcgtactaaggcccgatgt |
300 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
124733 |
caacaactatcgatagcatcgataaacatgacatacccaaaccaccattctgcttcaaggaatttgatatgataaagaagggcgtactaaggcccgatgt |
124634 |
T |
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| Q |
301 |
ccttataggttaaatcatcattcttttaattaagcttttgtttaatgcattttgtatttaatacgaatttgtgatgt |
377 |
Q |
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| T |
124633 |
ccttataggttaaatcatcattcttttaattaagcttttgtttaatgcattttgtatttaatacgaatttgtgatgt |
124557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 34 - 315
Target Start/End: Complemental strand, 23700063 - 23699791
Alignment:
| Q |
34 |
ttttcagggtgatcgtattcaagtcattttgccaaatgaattcaaagatcagtttaagagtagagttgctgagaacactacttttactctgcaaaacttt |
133 |
Q |
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||||||||||||||| |||||||| |||||||||| ||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||||||| ||||| |
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| T |
23700063 |
ttttcagggtgatcgaattcaagtaattttgccaactgaattcaaagataagtttaagagtagaattgctgagaacgctactttcactctgcaagacttt |
23699964 |
T |
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| Q |
134 |
gatgttgagaaaaatgagatgaccatcaaagcaactaatcataagtttaggctggtgtttaatgctgcaacaactattgatagcatcgacaaacatgaca |
233 |
Q |
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|| || ||||||||||| ||||||||||||| |||| ||||| | |||||| ||||||||||| || ||||| | || ||||||||||||| |
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| T |
23699963 |
gaggtagagaaaaatgatatgaccatcaaagtaactgatcatcaatttaggtaggtgtttaatggtggaacaagtgtt---------gacaaacatgaca |
23699873 |
T |
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| Q |
234 |
tacccaaaccaccattctgcttcaaggaatttgatatgataaagaagggcgtactaaggcccgatgtccttataggttaaat |
315 |
Q |
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| T |
23699872 |
tacctagaccatcattcagtttcaaggagtttgatgagatcaagaagggaatagtaaggccagatgtccttataggtaaaat |
23699791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 37 - 310
Target Start/End: Complemental strand, 22079763 - 22079490
Alignment:
| Q |
37 |
tcagggtgatcgtattcaagtcattttgccaaatgaattcaaagatcagtttaagagtagagttgctgagaacactacttttactctgcaaaactttgat |
136 |
Q |
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||||| ||||||||||||| | ||| ||||| |||| ||||||||||||||||| ||||| ||| |||||||||||| ||||||||||||||||||||| |
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| T |
22079763 |
tcaggttgatcgtattcaaataattctgccatttgaactcaaagatcagtttaagggtagaattgttgagaacactacctttactctgcaaaactttgat |
22079664 |
T |
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| Q |
137 |
gttgagaaaaatgagatgaccatcaaagcaactaatcataagtttaggctggtgtttaatgctgcaacaactattgatagcatcgacaaacatgacatac |
236 |
Q |
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|| ||||||||||| |||| || ||||||||| ||||| ||| || |||||||||||| || ||||| | |||| | ||| ||||| |||||||| | |
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| T |
22079663 |
gtcgagaaaaatgaaatgagtataaaagcaactgatcatccattttggttggtgtttaatggtggaacaagtgttgacaacattgacaagcatgacattc |
22079564 |
T |
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| Q |
237 |
ccaaaccaccattctgcttcaaggaatttgatatgataaagaagggcgtactaaggcccgatgtccttataggt |
310 |
Q |
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|||||||| | ||| ||| ||||| |||||| ||| |||||||| | ||||||||| |||||||| |||||| |
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| T |
22079563 |
ccaaaccatctttcaactttaaggactttgatgagatcaagaagggagcactaaggccagatgtcctaataggt |
22079490 |
T |
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