View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7624_low_1 (Length: 462)
Name: NF7624_low_1
Description: NF7624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7624_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 14 - 444
Target Start/End: Original strand, 42033470 - 42033900
Alignment:
| Q |
14 |
atatccccaacacttgcttcgaaaccgggtcaatatggttcttgatgatctcgtctatccgctctccttcatcattttctgtctgaatgcgaacaaatat |
113 |
Q |
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| T |
42033470 |
atatccccaacacttgcttcgaaaccgggtcaatatggttcttgatgatctcgtctatccgctctccttcatcattttctgtctgaatgcgaacaaatat |
42033569 |
T |
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| Q |
114 |
agctgttggagatgcaacgctgcggatgaaaagcgaagaagtgatataaggttgaacctctggaattttttccaaagcctgtttatgtgtatccagttta |
213 |
Q |
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| T |
42033570 |
agccgttggagatgcaacgctgcggatgaaaagcgaagaagtgatataaggttgaacctctggaattttttccaaagcctgtttatgtgtatccagttta |
42033669 |
T |
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| Q |
214 |
gtgtcctcatagaaagttttaaggtaatctggccaaagaacaaggtcttttcgaggtggtaaatcaagaacaagaattagcattgttggactgcttcgga |
313 |
Q |
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| T |
42033670 |
gtgtcctcatagaaagttttaaggtaatctggccaaagaacaaggtcttttcgaggtggtaaatcaagaacaagaattagcattgttggactgcttcgga |
42033769 |
T |
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| Q |
314 |
tcagctcgaacacgaaatttggtgcatcatttgaactgttaagataggctgaaagagatgttatatctaatgatcctcctgttggtagctcagcatgcac |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42033770 |
tcagctcgaacacgaaatttggtgcatcatttgaactgttaagataggctgaaagagatgttatatctaatgatcctcctgttggtagctcagcatgcac |
42033869 |
T |
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| Q |
414 |
ccagcttcccattacaaagtctatctgagac |
444 |
Q |
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| T |
42033870 |
ccagcttcccattacaaagtctatctgagac |
42033900 |
T |
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