View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7625_low_3 (Length: 347)
Name: NF7625_low_3
Description: NF7625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7625_low_3 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] scaffold0029 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 28961393 - 28961047
Alignment:
| Q |
1 |
acaccatcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttgcctaaattgagtga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28961393 |
acaccatcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttgcctaaattgagtga |
28961294 |
T |
|
| Q |
101 |
gctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctattaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28961293 |
gctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctattaat |
28961194 |
T |
|
| Q |
201 |
aagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacactacccgcccgatag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28961193 |
aagctcccgcatctctggcgtcagctcaggctaccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacactacccgcccgatag |
28961094 |
T |
|
| Q |
301 |
ttagcagccaagttaccaagaccgtagagcttccctttcttcttctc |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28961093 |
ttagcagccaagttaccaagaccgtagagcttccctttcttcttctc |
28961047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 5020303 - 5020644
Alignment:
| Q |
1 |
acaccatcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttgcctaaattgagtga |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5020303 |
acaccatcctcttcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttgcctaaattgagcga |
5020402 |
T |
|
| Q |
101 |
gctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctattaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5020403 |
gctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctatgaat |
5020502 |
T |
|
| Q |
201 |
aagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacactacccgcccgatag |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5020503 |
aagctcccgcatctctggcgtcagct--ggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacactacccgcccgatag |
5020600 |
T |
|
| Q |
301 |
ttagcagccaagttaccaagaccgtagagcttccctttcttctt |
344 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
5020601 |
ttagcggccaagttaccaagaccatagagctttcctttcttctt |
5020644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 22122106 - 22122450
Alignment:
| Q |
1 |
acaccatcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttgcctaaattgagtga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
22122106 |
acaccatcctcctcctcatctctatcgaccgaataaggctcaacattgggacttaaaatcggcgagggatcttgagcctgtgcttgcctaaattgagcga |
22122205 |
T |
|
| Q |
101 |
gctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctattaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
22122206 |
gctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctactgcgcgaattgctcttgtgccaatctatgaat |
22122305 |
T |
|
| Q |
201 |
aagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacactacccgcccgatag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22122306 |
aagctcccgcatctctggcgtcagctcaggctgccgagaggatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacactacccgccagatag |
22122405 |
T |
|
| Q |
301 |
ttagcagccaagttaccaagaccgtagagc-ttccctttcttctt |
344 |
Q |
| |
|
||||| ||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
22122406 |
ttagcggccaagttaccaagaccatagagctttccctttcttctt |
22122450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 34631302 - 34630959
Alignment:
| Q |
1 |
acaccatcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttgcctaaattgagtga |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
34631302 |
acaccatcctcctcctcatctgtatcgaccggataaggctcaacattgggacttaaaatcggcgagggatcttgagcctgtgcttgcctaaattgagcga |
34631203 |
T |
|
| Q |
101 |
gctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctattaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
34631202 |
gctgctcctcataagatctttggcggttgagcaaatcttgcacaaaagccgcttgagtcgccatatgctgcgcgaattgctcttgtgccaatctatttat |
34631103 |
T |
|
| Q |
201 |
aagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacactacccgcccgatag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
34631102 |
aagctcccgcatctctggcgtcagctcaggctgccgggaggatccttcaccatgattgagcgtaaatgtgagcgttgattcaacactacccggccgatag |
34631003 |
T |
|
| Q |
301 |
ttagcagccaagttaccaagaccgtagagcttccctttcttctt |
344 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
34631002 |
ttagcggccaagttaccaagaccatagagcttacccttcttctt |
34630959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 6 - 344
Target Start/End: Complemental strand, 34371521 - 34371183
Alignment:
| Q |
6 |
atcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttgcctaaattgagtgagctgc |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
34371521 |
atcctcctcctcatctctatcgaccggataaggctcaacattgagacttaaaaccggcgagggatcttgagcctgtgcttgcctaaattgagcgagctgc |
34371422 |
T |
|
| Q |
106 |
tcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctattaataagct |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||| ||||||||||| |||||||| |
|
|
| T |
34371421 |
tcctcataagatctttggcggttgagcaaatcttgcacaatagccgcttgagtcgccatctgctgcgcaaatttctcttttgccaatctatgaataagct |
34371322 |
T |
|
| Q |
206 |
cccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacactacccgcccgatagttagc |
305 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34371321 |
cccgcatctttggcgtcagctcaggctgccaggaggatccttcaccatgattgagcgtaaatgtgagtgttgatgcaacactacccgcccgatagttagc |
34371222 |
T |
|
| Q |
306 |
agccaagttaccaagaccgtagagcttccctttcttctt |
344 |
Q |
| |
|
||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
34371221 |
ggccaagttaccaagaccatagagctttcccttcttctt |
34371183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 286
Target Start/End: Original strand, 40542707 - 40542913
Alignment:
| Q |
80 |
gtgcttgcctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattg |
179 |
Q |
| |
|
||||||||||||| ||||| || ||||||||||| || ||| ||| | ||||||||||||||||| ||| | ||| ||||||| || || | || || |
|
|
| T |
40542707 |
gtgcttgcctaaactgagtcagttgctcctcatattttcgttgtcggctaagcaaatcttgcacaacggcctcgtgactcgccatttgttgtgtgagctg |
40542806 |
T |
|
| Q |
180 |
ctcttgtgccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgat |
279 |
Q |
| |
|
|||||| | |||||| | |||||| || | ||| || | ||||| ||||||| || | ||||||||||||||||| || |||| | |||| |||| | |
|
|
| T |
40542807 |
ctcttgagtcaatctttgaataaggtcacacatttcagaggtcagtgcaggctgttggaaggatccttcaccatgattaagggtaagtctgagagttgct |
40542906 |
T |
|
| Q |
280 |
gcaacac |
286 |
Q |
| |
|
||||||| |
|
|
| T |
40542907 |
gcaacac |
40542913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 5598279 - 5598622
Alignment:
| Q |
1 |
acaccatcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttgcctaaattgagtga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
5598279 |
acaccatcctcctcctcatctctatcgaccggataaggctcaatattgggacttaaaaccagcgagggatcttgagcctgtgcttgcctaaattgagcga |
5598378 |
T |
|
| Q |
101 |
gctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctattaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5598379 |
gctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctatgaat |
5598478 |
T |
|
| Q |
201 |
aagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacactacccgcccgatag |
300 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5598479 |
aagctcccgcatctctggcgttagctcaggctgccgggaggatccttcaccatgattgagcgtaaatgtgagtgttgatgcaacactacccgcccgatag |
5598578 |
T |
|
| Q |
301 |
ttagcagccaagttaccaagaccgtagagcttccctttcttctt |
344 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
5598579 |
ttagcggccaagttaccaagaccatagagctttcctttcttctt |
5598622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 7626614 - 7626271
Alignment:
| Q |
1 |
acaccatcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttgcctaaattgagtga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
7626614 |
acaccatcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaatcggcgagggatcttgagcctgtgcttgcctaaattgagcga |
7626515 |
T |
|
| Q |
101 |
gctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctattaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7626514 |
gctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctatttat |
7626415 |
T |
|
| Q |
201 |
aagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacactacccgcccgatag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| || |
|
|
| T |
7626414 |
aagctcccgcatctctggcgtcagctcaggctgtcgggaggatccttcaccatgattgagcgtaaatgtgagcgttgattcaacactacccggccgacag |
7626315 |
T |
|
| Q |
301 |
ttagcagccaagttaccaagaccgtagagcttccctttcttctt |
344 |
Q |
| |
|
||||| ||||||||||||||||| ||||| || || |||||||| |
|
|
| T |
7626314 |
ttagcggccaagttaccaagaccatagagtttacccttcttctt |
7626271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 64 - 344
Target Start/End: Complemental strand, 10998225 - 10997945
Alignment:
| Q |
64 |
gagggatcttgagcttgtgcttgcctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgcca |
163 |
Q |
| |
|
|||||| ||||||| ||||||||| ||| ||| || |||||||| || ||||||||||||| | || ||||||||||| || |||||| | |||| |
|
|
| T |
10998225 |
gagggagcttgagcctgtgcttgcgtaagccgagccagatgctcctcgtataatctttggcggttaatcatatcttgcacaagggctgcttgacttgcca |
10998126 |
T |
|
| Q |
164 |
tctgctgcgcgaattgctcttgtgccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgt |
263 |
Q |
| |
|
||||||||| ||| |||||||||| |||||||| || |||||||||||||||||||||||||||||||||| |||| | ||||||||| |||||||| || |
|
|
| T |
10998125 |
tctgctgcgtgaactgctcttgtgtcaatctatgaaaaagctcccgcatctctggcgtcagctcaggctgctgggaggttccttcaccctgattgagggt |
10998026 |
T |
|
| Q |
264 |
aaatgtgagcgttgatgcaacactacccgcccgatagttagcagccaagttaccaagaccgtagagcttccctttcttctt |
344 |
Q |
| |
|
| | |||| |||||||||||||||||| || |||||||| || |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
10998025 |
tagtctgagggttgatgcaacactaccctttcggtagttagcggctaagttaccaagaccatagagctttcctttcttctt |
10997945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 103 - 286
Target Start/End: Original strand, 7781666 - 7781849
Alignment:
| Q |
103 |
tgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctattaataa |
202 |
Q |
| |
|
||||||||||| | || ||||||| | || |||||||| ||||| ||| | || ||||||| ||||| | || |||||||| | |||||| | ||||| |
|
|
| T |
7781666 |
tgctcctcatatgttcgttggcggctaagaaaatcttgtacaacggcctcgtgtctcgccatttgctgggtgagctgctcttgagtcaatctttgaataa |
7781765 |
T |
|
| Q |
203 |
gctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacac |
286 |
Q |
| |
|
| || |||||||| || |||||| |||||||| |||| ||||||||||||||||| || |||||| |||| |||| |||||||| |
|
|
| T |
7781766 |
ggtcacgcatctcaggggtcagcgcaggctgctgggaggatccttcaccatgattaagggtaaatctgagggttgttgcaacac |
7781849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 51269302 - 51269334
Alignment:
| Q |
32 |
gataaggctcaacattgggacttaaaaccggcg |
64 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
51269302 |
gataaggctcaacattcggacttaaaaccggcg |
51269334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 64 - 344
Target Start/End: Original strand, 7430377 - 7430657
Alignment:
| Q |
64 |
gagggatcttgagcttgtgcttgcctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgcca |
163 |
Q |
| |
|
|||||||||||||| ||||||||| ||| ||| ||||||||||| || ||||||||||||| | ||||| |||||||| ||||||||| |||||| |
|
|
| T |
7430377 |
gagggatcttgagcctgtgcttgcgtaagccgagccagctgctcctcgtataatctttggcggttaatcaaatattgcacaagggccgcttgactcgcca |
7430476 |
T |
|
| Q |
164 |
tctgctgcgcgaattgctcttgtgccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgt |
263 |
Q |
| |
|
||||||||| ||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||| || |
|
|
| T |
7430477 |
tctgctgcgtgaactgctcttgtgtcaatctatgaataagctcccgcatctctggcgtcagctcaggctgctgggaggttccttcaccatgattgagggt |
7430576 |
T |
|
| Q |
264 |
aaatgtgagcgttgatgcaacactacccgcccgatagttagcagccaagttaccaagaccgtagagcttccctttcttctt |
344 |
Q |
| |
|
| | |||| ||||||||||||||| ||| ||| ||||||||||| ||||||||| || | |||||||| ||||||||||| |
|
|
| T |
7430577 |
tagtctgagggttgatgcaacactatccgtccggtagttagcagctaagttaccacgaacatagagctttcctttcttctt |
7430657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 31 - 344
Target Start/End: Complemental strand, 14606759 - 14606436
Alignment:
| Q |
31 |
ggataaggctcaacattgggacttaaaaccggcg----------agggatcttgagcttgtgcttgcctaaattgagtgagctgctcctcataagatctt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||| ||||||||||| || |||||| |
|
|
| T |
14606759 |
ggataaggctcaacattgggacttaaaaccggcgctctagtgggagggatcttgagcctgtgcttgcctaagctgagccagctgctcctcgtatgatctt |
14606660 |
T |
|
| Q |
121 |
tggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctattaataagctcccgcatctctggcg |
220 |
Q |
| |
|
||| |||| ||||||||| ||||| | ||||||| | ||||||||||||| ||| |||||||||| |||||||| ||||||||||||||||||||| | |
|
|
| T |
14606659 |
tggaggttaagcaaatctgccacaagggtcgcttgacttgccatctgctgcgtgaactgctcttgtgtcaatctatgaataagctcccgcatctctggtg |
14606560 |
T |
|
| Q |
221 |
tcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacactacccgcccgatagttagcagccaagttaccaag |
320 |
Q |
| |
|
|||||||| ||||| |||| |||||||||||||||||||| || | | |||| ||||||||||||||| || ||| |||||||| || ||||| ||||| |
|
|
| T |
14606559 |
tcagctcatgctgctgggaggatccttcaccatgattgagggttagtctgagggttgatgcaacactatccttccggtagttagcggctaagtttccaag |
14606460 |
T |
|
| Q |
321 |
accgtagagcttccctttcttctt |
344 |
Q |
| |
|
||| |||||||| ||||||||||| |
|
|
| T |
14606459 |
accatagagctttcctttcttctt |
14606436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 5 - 265
Target Start/End: Original strand, 6052409 - 6052681
Alignment:
| Q |
5 |
catcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcg------------agggatcttgagcttgtgcttgcctaaa |
92 |
Q |
| |
|
|||| ||||||||||||||||| || |||||||||||||||||||||||||||| | ||| ||||||||||||| |||||||||||||| |
|
|
| T |
6052409 |
catcatcctcctcatctctatcaactggataaggctcaacattgggacttaaaaacagcgctctagtgtgggagggatcttgagcatgtgcttgcctaaa |
6052508 |
T |
|
| Q |
93 |
ttgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaat |
192 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| |||||||||||| |||| ||||||||| ||||||| ||||||||| | |||||||||| |||| |
|
|
| T |
6052509 |
ctgagccagctgctcctcatatgatctttggcggttaagcaaatcttgctcaacggccgcttgactcgccatttgctgcgcggactgctcttgtgtcaat |
6052608 |
T |
|
| Q |
193 |
ctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaa |
265 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| |||| |
|
|
| T |
6052609 |
ctatgaataagctcccgcatctctggggtcagctcaggctgctgggagaatccttcaccatgattgagggtaa |
6052681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 64 - 344
Target Start/End: Original strand, 52784 - 53064
Alignment:
| Q |
64 |
gagggatcttgagcttgtgcttgcctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgcca |
163 |
Q |
| |
|
|||||| ||||| | ||||||||| ||| | |||| ||||||||||| || ||||||||||||| | ||| |||||||||| || |||||| | |||| |
|
|
| T |
52784 |
gagggagcttgatcctgtgcttgcataagtcgagtcagctgctcctcgtataatctttggcggttaatcaattcttgcacaagggctgcttgacttgcca |
52883 |
T |
|
| Q |
164 |
tctgctgcgcgaattgctcttgtgccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgt |
263 |
Q |
| |
|
||||||||| ||| |||||||||| |||||||| ||| ||||||||||||||||||||||||| ||||||| |||| | ||||||||| |||||||| || |
|
|
| T |
52884 |
tctgctgcgagaactgctcttgtgacaatctatgaatgagctcccgcatctctggcgtcagctgaggctgctgggaggttccttcaccctgattgagggt |
52983 |
T |
|
| Q |
264 |
aaatgtgagcgttgatgcaacactacccgcccgatagttagcagccaagttaccaagaccgtagagcttccctttcttctt |
344 |
Q |
| |
|
| | |||| |||||||||||||| ||| |||||||||||| || ||||||||||| || |||||||| ||||||||||| |
|
|
| T |
52984 |
tagtctgagggttgatgcaacacttcccttccgatagttagcggctaagttaccaaggccatagagctttcctttcttctt |
53064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 52739 - 52772
Alignment:
| Q |
31 |
ggataaggctcaacattgggacttaaaaccggcg |
64 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
52739 |
ggataaggctcaacattcggacttaaaaccggcg |
52772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 64 - 344
Target Start/End: Complemental strand, 22016137 - 22015857
Alignment:
| Q |
64 |
gagggatcttgagcttgtgcttgcctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgcca |
163 |
Q |
| |
|
|||||| ||||||| ||||||||| ||| ||| ||||||||||| || |||||||| |||| | |||||||||||||| | |||||| | ||| |
|
|
| T |
22016137 |
gagggagcttgagcctgtgcttgcgtaagccgagccagctgctcctcgtataatctttggtggttaatcaaatcttgcacaagggatgcttgactttcca |
22016038 |
T |
|
| Q |
164 |
tctgctgcgcgaattgctcttgtgccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgt |
263 |
Q |
| |
|
||||||| | ||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| | ||||||||| |||||||| || |
|
|
| T |
22016037 |
tctgctgtgtgaactgctcttgtgtcaatctatgaataagctcccgcatctctggcgtcagctcaggctgctgggaggttccttcaccctgattgagggt |
22015938 |
T |
|
| Q |
264 |
aaatgtgagcgttgatgcaacactacccgcccgatagttagcagccaagttaccaagaccgtagagcttccctttcttctt |
344 |
Q |
| |
|
| | |||| |||||||||||||| ||| ||| |||||||| || |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
22015937 |
tagtctgagggttgatgcaacactgcccttccggtagttagcggctaagttaccaagaccatagagctttcctttcttctt |
22015857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 9e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 64 - 344
Target Start/End: Complemental strand, 44326245 - 44325965
Alignment:
| Q |
64 |
gagggatcttgagcttgtgcttgcctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgcca |
163 |
Q |
| |
|
|||||| ||||||| ||||||||| ||| ||| ||||||||||| || |||||||| |||| | |||||||||||||| | |||||| | ||| |
|
|
| T |
44326245 |
gagggagcttgagcctgtgcttgcgtaagccgagccagctgctcctcgtataatctttggtggttaatcaaatcttgcacaagggatgcttgactttcca |
44326146 |
T |
|
| Q |
164 |
tctgctgcgcgaattgctcttgtgccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgt |
263 |
Q |
| |
|
||||||| | ||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| | ||||||||| |||||||| || |
|
|
| T |
44326145 |
tctgctgtgtgaactgctcttgtgtcaatctatgaataagctcccgcatctctggcgtcagctcaggctgctgggaggttccttcaccctgattgagggt |
44326046 |
T |
|
| Q |
264 |
aaatgtgagcgttgatgcaacactacccgcccgatagttagcagccaagttaccaagaccgtagagcttccctttcttctt |
344 |
Q |
| |
|
| | |||| |||||||||||||| ||| ||| |||||||| || |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
44326045 |
tagtctgagggttgatgcaacactgcccttccggtagttagcggctaagttaccaagaccatagagctttcctttcttctt |
44325965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 317
Target Start/End: Original strand, 6659819 - 6660054
Alignment:
| Q |
79 |
tgtgcttgcctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaatt |
178 |
Q |
| |
|
|||||||||| |||||||| | ||||||||||| | || ||||||| | ||||||||||| ||||| ||| | || ||||||| ||||| | || | |
|
|
| T |
6659819 |
tgtgcttgccgaaattgagccaattgctcctcatatgttcgttggcggctaagcaaatcttgtacaacggcctcatgtctcgccatttgctgggtgagct |
6659918 |
T |
|
| Q |
179 |
gctcttgtgccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttga |
278 |
Q |
| |
|
||||||| | |||||| | |||||| || |||||||| || ||||| |||||||| |||| |||||||| |||||||| || |||||| |||| |||| |
|
|
| T |
6659919 |
gctcttgagtcaatctttgaataaggtcacgcatctcaggggtcagtgcaggctgctgggaggatccttcgccatgattaagggtaaatctgagggttgt |
6660018 |
T |
|
| Q |
279 |
tgcaacactacccgcccgatagttagcagccaagttacc |
317 |
Q |
| |
|
|||||| |||| ||| |||||||| ||||||||||| |
|
|
| T |
6660019 |
tgcaac---acccttccggtagttagcggccaagttacc |
6660054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 79 - 286
Target Start/End: Complemental strand, 23450353 - 23450146
Alignment:
| Q |
79 |
tgtgcttgcctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaatt |
178 |
Q |
| |
|
|||||||||| |||||||| || ||||||||||| | || ||||||| | ||||||||||| ||||| ||| | || ||||||| ||||| | || | |
|
|
| T |
23450353 |
tgtgcttgccgaaattgagccagttgctcctcatatgttcgttggcggctaagcaaatcttgtacaacggcctcatgtctcgccatttgctgggtgagct |
23450254 |
T |
|
| Q |
179 |
gctcttgtgccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttga |
278 |
Q |
| |
|
||||||| | |||||| | |||||| || ||||||| || ||||| |||||||| |||| |||||||| |||||||| || |||||| |||| |||| |
|
|
| T |
23450253 |
gctcttgagtcaatctttgaataaggtcatgcatctcaggggtcagtgcaggctgctgggaggatccttcgccatgattaagggtaaatctgagggttgt |
23450154 |
T |
|
| Q |
279 |
tgcaacac |
286 |
Q |
| |
|
|||||||| |
|
|
| T |
23450153 |
tgcaacac |
23450146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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