View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7625_low_4 (Length: 339)

Name: NF7625_low_4
Description: NF7625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7625_low_4
NF7625_low_4
[»] chr5 (17 HSPs)
chr5 (20-324)||(29871186-29871490)
chr5 (20-260)||(30434822-30435062)
chr5 (49-260)||(30339388-30339599)
chr5 (55-323)||(30059392-30059660)
chr5 (20-324)||(30243171-30243475)
chr5 (49-265)||(4380687-4380903)
chr5 (49-330)||(30714227-30714508)
chr5 (20-324)||(30482404-30482708)
chr5 (55-262)||(30399100-30399307)
chr5 (59-262)||(29852338-29852541)
chr5 (55-260)||(30748678-30748883)
chr5 (53-260)||(30678031-30678241)
chr5 (50-254)||(30205540-30205747)
chr5 (20-241)||(30203150-30203372)
chr5 (106-254)||(17982006-17982152)
chr5 (101-168)||(29709864-29709931)
chr5 (287-324)||(30748910-30748947)
[»] chr4 (2 HSPs)
chr4 (20-260)||(20297466-20297706)
chr4 (191-238)||(52351128-52351175)
[»] chr7 (1 HSPs)
chr7 (55-323)||(26706367-26706635)
[»] chr1 (2 HSPs)
chr1 (50-254)||(7582597-7582801)
chr1 (49-254)||(7098444-7098649)


Alignment Details
Target: chr5 (Bit Score: 176; Significance: 9e-95; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 20 - 324
Target Start/End: Original strand, 29871186 - 29871490
Alignment:
Q  20 agtaactcattgttacatggactgacacggaggtctttaagagatggaagacatggcagtccaattttagggcaacatgagatttccaaattagaaagac 119  Q
    |||||||||||||||||||||  | ||  |||||||||||||||||||||||||||||||||||||||||||||     | || |||||| |||||||||    
T  29871186 agtaactcattgttacatggatcggcaacgaggtctttaagagatggaagacatggcagtccaattttagggcatttccaaatatccaaactagaaagac 29871285  T
Q  120 aaggaaacatctcccctctttccactttcaataacccctctatgtttggtaactcatataagtcgagtacctccagagatgggaaaaccctcacctccat 219  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||  ||||| |||||||||||||||||| ||||||||||||    
T  29871286 aaggaaacatctcccctctttcaactttcaataaaccctctatgtttggtaacttatataatacgagttcctccagagatgggaaaatcctcacctccat 29871385  T
Q  220 accatcctcagattcatcatcatccaagtatttcagattatccgtataacttaattgcagnnnnnnnagagatggtagtttaccaagtaacggaatcccc 319  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||  ||||| |||       |||||||||||||||||||||||||||| || |    
T  29871386 accatcctgagattcatcatcatccaagtatttcagattatccatataagataattccagtttttttagagatggtagtttaccaagtaacggaagccgc 29871485  T
Q  320 acaat 324  Q
    |||||    
T  29871486 acaat 29871490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 30434822 - 30435062
Alignment:
Q  20 agtaactcattgttacatggactgacacggaggtctttaagagatggaagacatggcagtccaattttagggcaacatgagatttccaaattagaaagac 119  Q
    |||||||||||||||| |  |  ||||| ||||||||||||||||||||||||||||||||||| |||||||||     |||| |||||| |||||||||    
T  30434822 agtaactcattgttacgtccatcgacaccgaggtctttaagagatggaagacatggcagtccaagtttagggcatttccagatatccaaactagaaagac 30434921  T
Q  120 aaggaaacatctcccctctttccactttcaataacccctctatgtttggtaactcatataagtcgagtacctccagagatgggaaaaccctcacctccat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||||||| |||||||||||||    
T  30434922 aaggaaacatctcccctctttccactttcaataacccctctatgtttggtaacccatgtaattcgagtacctccaaagatgggaaagccctcacctccat 30435021  T
Q  220 accatcctcagattcatcatcatccaagtatttcagattat 260  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30435022 accatcctcagattcatcatcatccaagtatttcagattat 30435062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 49 - 260
Target Start/End: Complemental strand, 30339599 - 30339388
Alignment:
Q  49 gaggtctttaagagatggaagacatggcagtccaattttagggcaacatgagatttccaaattagaaagacaaggaaacatctcccctctttccactttc 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||  ||| |||||||||||||||||||||||||||||||||||||||    
T  30339599 gaggtctttaagagatggaagacatggcagtccaattttagggcaataggagattgtcaagttagaaagacaaggaaacatctcccctctttccactttc 30339500  T
Q  149 aataacccctctatgtttggtaactcatataagtcgagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagt 248  Q
    ||||||||||||||||||||||     | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30339499 aataacccctctatgtttggtaggcgttgtaagtagagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagt 30339400  T
Q  249 atttcagattat 260  Q
    ||||||||||||    
T  30339399 atttcagattat 30339388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 55 - 323
Target Start/End: Original strand, 30059392 - 30059660
Alignment:
Q  55 tttaagagatggaagacatggcagtccaattttagggcaacatgagatttccaaattagaaagacaaggaaacatctcccctctttccactttcaataac 154  Q
    ||||||||||||||||||||||||||||| |||| ||||    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  30059392 tttaagagatggaagacatggcagtccaagtttacggcattcagagatatccaacttagaaagacaaggaaacatctcccctctttccactttcaataaa 30059491  T
Q  155 ccctctatgtttggtaactcatataagtcgagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttca 254  Q
    ||||||||||||||||||| ||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30059492 ccctctatgtttggtaactgatataatacgagttcctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttca 30059591  T
Q  255 gattatccgtataacttaattgcagnnnnnnnagagatggtagtttaccaagtaacggaatccccacaa 323  Q
    |||||||| |||||  ||||| |||       | |||||||||| ||||||||||| ||| || |||||    
T  30059592 gattatccatataagataattccaggttttttaaagatggtagtataccaagtaactgaagccgcacaa 30059660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 20 - 324
Target Start/End: Complemental strand, 30243475 - 30243171
Alignment:
Q  20 agtaactcattgttacatggactgacacggaggtctttaagagatggaagacatggcagtccaattttagggcaacatgagatttccaaattagaaagac 119  Q
    ||||||||||||||||||   |  |||  ||||||||||||||||||||||||||||||||||| |||||||||     |||| |||||| |||||||||    
T  30243475 agtaactcattgttacattcccatacaaagaggtctttaagagatggaagacatggcagtccaagtttagggcatttccagatatccaaactagaaagac 30243376  T
Q  120 aaggaaacatctcccctctttccactttcaataacccctctatgtttggtaactcatataagtcgagtacctccagagatgggaaaaccctcacctccat 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    | |||| | ||||||||| ||||||||||||||||||||||||||    
T  30243375 aaggaaacatctcccctctttccactttcaataacccctctatgtttggtagacaagataattggagtacctctagagatgggaaaaccctcacctccat 30243276  T
Q  220 accatcctcagattcatcatcatccaagtatttcagattatccgtataacttaattgcagnnnnnnnagagatggtagtttaccaagtaacggaatcccc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |    ||||| |||       ||| |||||||||||||||||||||||| || |    
T  30243275 accatcctcagattcatcatcatccaagtatttcagattatccatttcgaataattccagtttttttagatatggtagtttaccaagtaacggaagccgc 30243176  T
Q  320 acaat 324  Q
    |||||    
T  30243175 acaat 30243171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 49 - 265
Target Start/End: Original strand, 4380687 - 4380903
Alignment:
Q  49 gaggtctttaagagatggaagacatggcagtccaattttagggcaacatgagatttccaaattagaaagacaaggaaacatctcccctctttccactttc 148  Q
    ||||| ||||||||||||| ||||||||||||||| ||||||||||    |||| ||||| ||||||||||||||||||| |||||||||||||||||||    
T  4380687 gaggtgtttaagagatggatgacatggcagtccaagtttagggcaattctagatatccaagttagaaagacaaggaaacaactcccctctttccactttc 4380786  T
Q  149 aataacccctctatgtttggtaactcatataagtcgagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagt 248  Q
    |||||||||| |||||||||||    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4380787 aataacccctttatgtttggtagacaatataattcgagtacctccagagatgggaaaaccctcacctccataccatcctcaaattcatcatcatccaagt 4380886  T
Q  249 atttcagattatccgta 265  Q
    |||||||||||||||||    
T  4380887 atttcagattatccgta 4380903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 49 - 330
Target Start/End: Complemental strand, 30714508 - 30714227
Alignment:
Q  49 gaggtctttaagagatggaagacatggcagtccaattttagggcaacatgagatttccaaattagaaagacaaggaaacatctcccctctttccactttc 148  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||   |||| |||| ||||||||| |||||||||||||||||||||||||||||    
T  30714508 gaggtctttaagagatggaagacatggcagtccaagtttagggcaacaatcgattaccaatttagaaagagaaggaaacatctcccctctttccactttc 30714409  T
Q  149 aataacccctctatgtttggtaactcatataagtcgagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagt 248  Q
    ||||||||| |||||||| |||    | |||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30714408 aataaccccactatgtttcgtagacaagataattcgagtatctccagagaggggaaaaccctcacctccataccatcctcagattcatcatcatccaagt 30714309  T
Q  249 atttcagattatccgtataacttaattgcagnnnnnnnagagatggtagtttaccaagtaacggaatccccacaatattctt 330  Q
    ||||||||||||   ||  |  ||||  |||       |||||||||||||||||||||||||||| || |||||| |||||    
T  30714308 atttcagattattgataccatataatctcagtttttttagagatggtagtttaccaagtaacggaagccgcacaattttctt 30714227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 20 - 324
Target Start/End: Original strand, 30482404 - 30482708
Alignment:
Q  20 agtaactcattgttacatggactgacacggaggtctttaagagatggaagacatggcagtccaattttagggcaacatgagatttccaaattagaaagac 119  Q
    ||||||||||||||||||  |   |||  |||| ||| ||||||||||||| |||||||||||| |||| ||||| ||||||||||||| | ||||||||    
T  30482404 agtaactcattgttacatccatccacatagaggccttcaagagatggaagagatggcagtccaagtttatggcaatatgagatttccaagtaagaaagac 30482503  T
Q  120 aaggaaacatctcccctctttccactttcaataacccctctatgtttggtaactcatataagtcgagtacctccagagatgggaaaaccctcacctccat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||  |    ||| | |||  ||  ||||||| |||||||| |||||||||     
T  30482504 aaggaaacatctcccctctttccactttcaataacccctctatgtttcgtaggtatcgtaaatggagatccatcagagatcggaaaaccatcacctccac 30482603  T
Q  220 accatcctcagattcatcatcatccaagtatttcagattatccgtataacttaattgcagnnnnnnnagagatggtagtttaccaagtaacggaatcccc 319  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||  ||||| |||       |||||||||||||||||||||||||||| || |    
T  30482604 accatcctgagattcatcatcatccaagtatttcagattatccatataagataattccagtttttttagagatggtagtttaccaagtaacggaagccgc 30482703  T
Q  320 acaat 324  Q
    |||||    
T  30482704 acaat 30482708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 55 - 262
Target Start/End: Original strand, 30399100 - 30399307
Alignment:
Q  55 tttaagagatggaagacatggcagtccaattttagggcaacatgagatttccaaattagaaagacaaggaaacatctcccctctttccactttcaataac 154  Q
    ||||||||||||||||||||||| ||||| ||||||||||  || ||||  ||| | |||||||||||||||||||||||||||||||||||||||||||    
T  30399100 tttaagagatggaagacatggcactccaagtttagggcaagctgtgattctcaactcagaaagacaaggaaacatctcccctctttccactttcaataac 30399199  T
Q  155 ccctctatgtttggtaactcata-taagtcgagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttc 253  Q
    ||||||||||||||| |  |||| ||| | |||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  30399200 ccctctatgtttggt-aggcatagtaaatggagttcctccagagatgggaaaaccctcacctccacaccatcctgagattcatcatcatccaagtatttc 30399298  T
Q  254 agattatcc 262  Q
    |||||||||    
T  30399299 agattatcc 30399307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 59 - 262
Target Start/End: Original strand, 29852338 - 29852541
Alignment:
Q  59 agagatggaagacatggcagtccaattttagggcaacatgagatttccaaattagaaagacaaggaaacatctcccctctttccactttcaataacccct 158  Q
    ||||||||||||||||||||||||| || ||||||| ||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  29852338 agagatggaagacatggcagtccaagttcagggcaatatgagattttcaaattagaaagacaaggaaatatcttccctctttccactttcaataacccct 29852437  T
Q  159 ctatgtttggtaactcatataagtcgagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagatt 258  Q
    |||||||| |||     | |||    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29852438 ctatgtttcgtaggcgttgtaatagaagtatctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatctaagtatttcagatt 29852537  T
Q  259 atcc 262  Q
    ||||    
T  29852538 atcc 29852541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 55 - 260
Target Start/End: Original strand, 30748678 - 30748883
Alignment:
Q  55 tttaagagatggaagacatggcagtccaattttagggcaacatgagatttccaaattagaaagacaaggaaacatctcccctctttccactttcaataac 154  Q
    ||||||||||||||||||||||||||||| || |||||||    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  30748678 tttaagagatggaagacatggcagtccaagttcagggcaatcccagatatccaacttagaaagacaaggaaacatctcccctctttccactttcaataat 30748777  T
Q  155 ccctctatgtttggtaactcatataagtcgagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttca 254  Q
    ||||||||||||||||     | ||||| |||| |||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  30748778 ccctctatgtttggtagggattttaagttgagttcctctagagatgggaaaacgctcacctccataccatactcagattcatcatcatccaagtatttca 30748877  T
Q  255 gattat 260  Q
    ||||||    
T  30748878 gattat 30748883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 53 - 260
Target Start/End: Complemental strand, 30678241 - 30678031
Alignment:
Q  53 tctttaagagatggaagacatggcagtccaat---tttagggcaacatgagatttccaaattagaaagacaaggaaacatctcccctctttccactttca 149  Q
    |||||||||||||||||||||||||||||||    ||||||||||    |||| |||||  |||||||||||||||||||||||||||||||||||||||    
T  30678241 tctttaagagatggaagacatggcagtccaagcagtttagggcaattccagatatccaacctagaaagacaaggaaacatctcccctctttccactttca 30678142  T
Q  150 ataacccctctatgtttggtaactcatataagtcgagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagta 249  Q
    |||||||||||||||||||||    || |||   ||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30678141 ataacccctctatgtttggtagagaatctaataagagtttctccagagatgggaaaaccctcaccttcataccatcctcagattcatcatcatccaagta 30678042  T
Q  250 tttcagattat 260  Q
    |||||||||||    
T  30678041 tttcagattat 30678031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 50 - 254
Target Start/End: Original strand, 30205540 - 30205747
Alignment:
Q  50 aggtctttaagagatggaagacatggcagtccaattttagggcaacatgagatttccaaattagaaagacaaggaaacatctcccctctttccactttca 149  Q
    |||| ||||||||||  ||||||||||||||||| |||||||||| | |||||    |||  ||||||||||||||||||||| ||||||||||||||||    
T  30205540 aggtttttaagagatacaagacatggcagtccaagtttagggcaaaaggagatggttaaacgagaaagacaaggaaacatctcacctctttccactttca 30205639  T
Q  150 ataacccctctatgtttggtaactcatataagtcgagtacctccagagatgggaaaaccctcacctccataccatcctcaga---ttcatcatcatccaa 246  Q
    ||||||| |||| ||||||||     | |||   ||||||||||||||||||||||| |||| || | |||||||| | |||   |||||||||||||||    
T  30205640 ataacccttctaagtttggtaggatttctaatatgagtacctccagagatgggaaaatcctcgccacaataccatcttgagattcttcatcatcatccaa 30205739  T
Q  247 gtatttca 254  Q
    ||||||||    
T  30205740 gtatttca 30205747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 30203150 - 30203372
Alignment:
Q  20 agtaactcattgttacatggactgacacggaggtctttaagagatggaagacatggcagtccaattttagggcaacatgagatttccaaattagaaagac 119  Q
    ||||||||||||||||||  | | |||   |||| ||||| | |||||||||||| ||||  || ||||||| || | | ||| ||||| | | ||||||    
T  30203150 agtaactcattgttacattcatttacataaaggtttttaacatatggaagacatgacagttgaagtttagggtaaaaggcgatatccaattgaaaaagac 30203249  T
Q  120 aaggaaacatctcccctctttccac-------tttcaataacccctctatgtttggtaactcatataagtcgagtacctccagagatgggaaaaccctca 212  Q
    |||||||||||||| ||||||||||       |||||| |||||||||| ||||||||| |||| |||      |||||||| | ||||||||| |||||    
T  30203250 aaggaaacatctcctctctttccactttcaagtttcaacaacccctctaagtttggtaaatcatttaa------tacctccaaatatgggaaaatcctca 30203343  T
Q  213 cctccataccatcctcagattcatcatca 241  Q
    ||||||||||||  | |||||||||||||    
T  30203344 cctccataccattgtgagattcatcatca 30203372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 106 - 254
Target Start/End: Original strand, 17982006 - 17982152
Alignment:
Q  106 caaattagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttggtaactcatataagtcgagtacctccagagatgggaaa 205  Q
    |||| ||||||||||||||  ||| || ||||||||||||||||| |  ||||||| ||||| ||| | || |||   ||||| ||||||||||||||||    
T  17982006 caaaatagaaagacaagga--catttctcctctttccactttcaacagaccctctaagtttgataaattatttaatgtgagtatctccagagatgggaaa 17982103  T
Q  206 accctcacctccataccatcctcagattcatcatcatccaagtatttca 254  Q
        ||| ||||| |||||  ||| ||||||||||||||||||||||||    
T  17982104 tttatcatctccacaccattttcaaattcatcatcatccaagtatttca 17982152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 29709931 - 29709864
Alignment:
Q  101 atttccaaattagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttgg 168  Q
    |||| |||| ||||| |||||||||||| |||| |||||||||| |||| ||||||||||| ||||||    
T  29709931 attttcaaaatagaaggacaaggaaacacctcctctctttccacattcactaacccctctaagtttgg 29709864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 30748910 - 30748947
Alignment:
Q  287 agagatggtagtttaccaagtaacggaatccccacaat 324  Q
    |||||||||||||||||||||||||||| || ||||||    
T  30748910 agagatggtagtttaccaagtaacggaagccgcacaat 30748947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 20 - 260
Target Start/End: Complemental strand, 20297706 - 20297466
Alignment:
Q  20 agtaactcattgttacatggactgacacggaggtctttaagagatggaagacatggcagtccaattttagggcaacatgagatttccaaattagaaagac 119  Q
    |||||||||||||||||||||  ||||  ||||  ||||||||||||||||||||||| ||||| |||||||||    ||||||| ||| ||||||||||    
T  20297706 agtaactcattgttacatggatcgacatcgagggatttaagagatggaagacatggcattccaagtttagggcatttggagattttcaacttagaaagac 20297607  T
Q  120 aaggaaacatctcccctctttccactttcaataacccctctatgtttggtaactcatataagtcgagtacctccagagatgggaaaaccctcacctccat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||    | ||||||||||||||||||||||||||||||||||||||||| |    
T  20297606 aaggaaacatctcccctctttccactttcaataacccctctatgttttgtagacaaaataagtcgagtacctccagagatgggaaaaccctcacctccct 20297507  T
Q  220 accatcctcagattcatcatcatccaagtatttcagattat 260  Q
    |||||||  ||||||||||||||||||||||||||||||||    
T  20297506 accatcccgagattcatcatcatccaagtatttcagattat 20297466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 52351128 - 52351175
Alignment:
Q  191 tccagagatgggaaaaccctcacctccataccatcctcagattcatca 238  Q
    |||||||||||||||||||||||| ||| |||||| | ||||||||||    
T  52351128 tccagagatgggaaaaccctcacccccacaccatcgtgagattcatca 52351175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 55 - 323
Target Start/End: Original strand, 26706367 - 26706635
Alignment:
Q  55 tttaagagatggaagacatggcagtccaattttagggcaacatgagatttccaaattagaaagacaaggaaacatctcccctctttccactttcaataac 154  Q
    ||||||||||||||||||||||||||| |  ||||||||| |  | |||  ||||  ||||||||||||||||| ||  |||||||||||||||||||||    
T  26706367 tttaagagatggaagacatggcagtcctagcttagggcaatagtatattgtcaaacgagaaagacaaggaaacacctttcctctttccactttcaataac 26706466  T
Q  155 ccctctatgtttggtaactcatataagtcgagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttca 254  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  26706467 ccctctatgtttggtaactcatataagtggagtaccttcagagatgggaaaaccctcacctccatgccatcctgagattcatcatcatccaagtatttca 26706566  T
Q  255 gattatccgtataacttaattgcagnnnnnnnagagatggtagtttaccaagtaacggaatccccacaa 323  Q
    ||||| || || ||  ||||| |||       |||||||||||||||||||||||||||| || |||||    
T  26706567 gattaaccatagaagataattccagtttttctagagatggtagtttaccaagtaacggaagccgcacaa 26706635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 50 - 254
Target Start/End: Complemental strand, 7582801 - 7582597
Alignment:
Q  50 aggtctttaagagatggaagacatggcagtccaattttagggcaacatgagatttccaaattagaaagacaaggaaacatctcccctctttccactttca 149  Q
    |||||||||| |||||||||||| || ||| ||| ||||||||||     ||| | |||| |||||||||||||||||||||||  | ||||||||||||    
T  7582801 aggtctttaacagatggaagacacggaagttcaagtttagggcaattgttgatgttcaaaatagaaagacaaggaaacatctcctttttttccactttca 7582702  T
Q  150 ataacccctctatgtttggtaactcatataagtcgagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagta 249  Q
    | |||||||||| ||||||||| ||||  |     |||||||| |||||||||||||  ||||| |||| |||||  | | |||||||||||||||||||    
T  7582701 acaacccctctaagtttggtaagtcatcaattataagtacctcaagagatgggaaaattctcacttccaaaccattgtgaaattcatcatcatccaagta 7582602  T
Q  250 tttca 254  Q
    |||||    
T  7582601 tttca 7582597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 49 - 254
Target Start/End: Original strand, 7098444 - 7098649
Alignment:
Q  49 gaggtctttaagagatggaagacatggcagtccaattttagggcaacatgagatttccaaattagaaagacaaggaaacatctcccctctttccactttc 148  Q
    ||||||| ||| |||||||||||| || ||| ||| ||||||||||     |||||||||| ||||||||||||||||| ||||  ||||||||||||||    
T  7098444 gaggtctctaacagatggaagacacggaagttcaagtttagggcaattgtcgatttccaaaatagaaagacaaggaaacgtctcatctctttccactttc 7098543  T
Q  149 aataacccctctatgtttggtaactcatataagtcgagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagt 248  Q
    || |  ||||||| |||||| | | |   |||   ||||  ||| ||||||||||||| ||| |||||||||||||  | | |||||| |||||||||||    
T  7098544 aacagtccctctaagtttggcatcccgcgtaacaagagtgtctctagagatgggaaaatccttacctccataccattgtgaaattcattatcatccaagt 7098643  T
Q  249 atttca 254  Q
    ||||||    
T  7098644 atttca 7098649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University