View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7626_high_10 (Length: 351)
Name: NF7626_high_10
Description: NF7626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7626_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 14175978 - 14175761
Alignment:
| Q |
19 |
attatgcacatttaatattctgcaaaacagtgtttgatgaatattaggagtacaagggtacctagcactcctcttatattggtatctaaacctatagtta |
118 |
Q |
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| T |
14175978 |
attatgcacatttaatattctccaaaacagtgtttgatgaatattaggagtacaagggtacctagcactccttttattttggtatctaaacctatagtta |
14175879 |
T |
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| Q |
119 |
gtaactaatcataaattggccaaacactaaatacatttggtaatgctaaacctaaaggaacccacctcaattttagccgataaacgattatgattcgcta |
218 |
Q |
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| T |
14175878 |
ataactaatcataaattggccaaacactaaatacatttggtaatgctaaacctaaaggaacccacctcaattttagccgataaacgattatgattcgcta |
14175779 |
T |
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| Q |
219 |
atcccaatatcaagcttc |
236 |
Q |
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| T |
14175778 |
atcccaatatcaagcttc |
14175761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 264 - 318
Target Start/End: Complemental strand, 14175768 - 14175714
Alignment:
| Q |
264 |
caagcctcccgcaagctgcaaattcagtccaaccatcaatccaaactcttaccaa |
318 |
Q |
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| T |
14175768 |
caagcttcccgcaagctccaaattcagtccaaccatcaatccaaactcttaccaa |
14175714 |
T |
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