View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7626_high_14 (Length: 250)
Name: NF7626_high_14
Description: NF7626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7626_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 41 - 213
Target Start/End: Complemental strand, 2712593 - 2712424
Alignment:
| Q |
41 |
ggggggtgtagttagcaggtgaaatgatgcgtggcggtggtgatggaaggaggaatccaggacaaatgatctattaccgcttaatttaaatttgtttaaa |
140 |
Q |
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| T |
2712593 |
ggggggtgtagttagcaggtgaaatgatgcg---cggtggggatggaaggaggaatccaggataaatgatctattaccgcttaatttaaatttgtttaaa |
2712497 |
T |
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| Q |
141 |
atccttaatttttcgttattttccgcaaaatctgatgttgaagcattacccaccattgttgtcaatatcgatt |
213 |
Q |
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| T |
2712496 |
atccttaatttttcgttattttccgcaaaatctgatgttgaagcattacccaccattgttgtcaatatcgatt |
2712424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 2712660 - 2712614
Alignment:
| Q |
2 |
cataggaggattggatgaggtagagttgttgaagagaaaggggggtg |
48 |
Q |
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| T |
2712660 |
cataggaggattggatgaggtagagttgttgaagagaaaggggggtg |
2712614 |
T |
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