View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7626_high_2 (Length: 581)
Name: NF7626_high_2
Description: NF7626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7626_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 121 - 568
Target Start/End: Complemental strand, 13871558 - 13871094
Alignment:
| Q |
121 |
catgagcttgtctataacgcatttaagaagagatgcacaaattatcttatacatacgaaggcgaggaagaagg-----------------atagatgagc |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||| |
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| T |
13871558 |
catgagcttgtctataacgcatttaagaagagatgcacaaattatcttatacatatgaaagcgaggaagaagggggtcagccctggttggatagatgagc |
13871459 |
T |
|
| Q |
204 |
aggcatggctgatcttgttacccattgggaaagtacacacttccaaagggtctacatcacagagtctcatatcattgcggcaccggagatgttatgtaaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13871458 |
aggcatggctgatcttgttacccattgggaaagtacacacttccaaagggtctacatcacagagtctcatatcattgcggcaccggagatgttatgtaaa |
13871359 |
T |
|
| Q |
304 |
aacttaacacttattgtctaaattcgttatcatagattatgtgttatttgttaacaagtgttgactttattggtaggccaaaaaacatgtgccatatgtg |
403 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
13871358 |
aacttaacacttattgtccaaattcgttatcatagattatgtgttatttgtcaacaagtgttgactttattggtaggccaaaaaacatgtgccatatgcg |
13871259 |
T |
|
| Q |
404 |
ccgattgataagcgatatttggccgctcacgagtggaatgacaaaagtgttgattgtccttctaagagaacatatgtaagtttctggtcgcatccattac |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13871258 |
ccgattgataagcgatatttggccgctcacgagtggaatgacaaaagtgttgattgtccttctaagagaacatatgtaagtttctggtcgcatccattac |
13871159 |
T |
|
| Q |
504 |
cctgatattacttgttcagcaagttaaatatgtatcttattagctcataactacatacacaggtt |
568 |
Q |
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| T |
13871158 |
cttgatattacttgttcagcaagttaaatatgtatcttattagctcataactacatacacaggtt |
13871094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 121 - 568
Target Start/End: Complemental strand, 14011683 - 14011219
Alignment:
| Q |
121 |
catgagcttgtctataacgcatttaagaagagatgcacaaattatcttatacatacgaaggcgaggaagaagg-----------------atagatgagc |
203 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||| |
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| T |
14011683 |
catgagcttgtctataacgcatttaagaagagatgcacaaattatcttatacatatgaaagcgaggaagaagggggtcagccctggttggatagatgagc |
14011584 |
T |
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| Q |
204 |
aggcatggctgatcttgttacccattgggaaagtacacacttccaaagggtctacatcacagagtctcatatcattgcggcaccggagatgttatgtaaa |
303 |
Q |
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| T |
14011583 |
aggcatggctgatcttgttacccattgggaaagtacacacttccaaagggtctacatcacagagtctcatatcattgcggcaccggagatgttatgtaaa |
14011484 |
T |
|
| Q |
304 |
aacttaacacttattgtctaaattcgttatcatagattatgtgttatttgttaacaagtgttgactttattggtaggccaaaaaacatgtgccatatgtg |
403 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
14011483 |
aacttaacacttattgtccaaattcgttatcatagattatgtgttatttgtcaacaagtgttgactttattggtaggccaaaaaacatgtgccatatgcg |
14011384 |
T |
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| Q |
404 |
ccgattgataagcgatatttggccgctcacgagtggaatgacaaaagtgttgattgtccttctaagagaacatatgtaagtttctggtcgcatccattac |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14011383 |
ccgattgataagcgatatttggccgctcacgagtggaatgacaaaagtgttgattgtccttctaagagaacatatgtaagtttctggtcgcatccattac |
14011284 |
T |
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| Q |
504 |
cctgatattacttgttcagcaagttaaatatgtatcttattagctcataactacatacacaggtt |
568 |
Q |
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| T |
14011283 |
cttgatattacttgttcagcaagttaaatatgtatcttattagctcataactacatacacaggtt |
14011219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 13872119 - 13872057
Alignment:
| Q |
57 |
tgagcctcaaatacaagaatctatgccgcaacggcctctacaaatggaggaaaatcatgatca |
119 |
Q |
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| T |
13872119 |
tgagcctcaaatacaagaatctatgccgcaacggcctctacaaatggaggaaaatcatgatca |
13872057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 14012244 - 14012182
Alignment:
| Q |
57 |
tgagcctcaaatacaagaatctatgccgcaacggcctctacaaatggaggaaaatcatgatca |
119 |
Q |
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| T |
14012244 |
tgagcctcaaatacaagaatctatgccgcaacggcctctacaaatggaggaaaatcatgatca |
14012182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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