View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7626_high_5 (Length: 419)
Name: NF7626_high_5
Description: NF7626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7626_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 6959414 - 6959005
Alignment:
| Q |
1 |
atgtacgtgatgcaataggttcgatcaaaacaagggaaaatgaatatgtctacctcaaaactcaactaactcgtctttt---gttttcatcaaaccaaca |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
6959414 |
atgtacgtgatgcaataggttcgatcaaaacaagggaaaatgaatatgtctacctcaaaacccaactaactcgtcttttcttgttttcatcaaaccaaca |
6959315 |
T |
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| Q |
98 |
atgatgaggtcatagtctcagctataaggacgaggaggatcatgacctttatttccgatgagtattgtaccgtcgttagagtttcaatgatttttaagtg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6959314 |
atgatgaggtcatagtctcagctataaggacgaggaggatcatgacctttatttccgatgagtattgtaccgtcgttagagtttcaatgatttttaagtg |
6959215 |
T |
|
| Q |
198 |
tccggtctactatggaccacctaacaagatggccaccgtaaaacctgcttgaaattccaatattattcttgcggtgatactacataattcattggcttaa |
297 |
Q |
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| T |
6959214 |
cccggtctactatggacgacctaacaagatggccaccataaaacctgcttgaaattccaatattattctcgcggtgatactacataattcattggcttaa |
6959115 |
T |
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| Q |
298 |
atgatcagccagtcccacaactaaaaagcatctcaaaggagtcctttaatataaatatcgtaaatggtgttgtgattttggtatgttttgggttttgaaa |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6959114 |
atgatcagccagtcccacaactaaaaagcatctcaaagtagtcctttaatataaatatcgtaaatggtgttgtgattttggtatgttttgggttttgaaa |
6959015 |
T |
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| Q |
398 |
ttttggggat |
407 |
Q |
| |
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| T |
6959014 |
ttttggggat |
6959005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 6966884 - 6966829
Alignment:
| Q |
213 |
accacctaacaagatggccaccgtaaaacctgcttgaaattccaatattattcttg |
268 |
Q |
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|||||||| |||||||| ||||| |||||| || | |||||||||||||||||||| |
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| T |
6966884 |
accacctatcaagatggtcaccgaaaaacccgcctaaaattccaatattattcttg |
6966829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 368 - 407
Target Start/End: Complemental strand, 13280007 - 13279968
Alignment:
| Q |
368 |
tgtgattttggtatgttttgggttttgaaattttggggat |
407 |
Q |
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||||| ||||||||||||| |||||||||||||||||||| |
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| T |
13280007 |
tgtgaatttggtatgtttttggttttgaaattttggggat |
13279968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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