View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7626_low_1 (Length: 672)
Name: NF7626_low_1
Description: NF7626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7626_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 86 - 654
Target Start/End: Complemental strand, 5612028 - 5611455
Alignment:
| Q |
86 |
gaaaattcagataatccaataacatattctaacacccactacacatacttcttattaaactcatgtaatgttttatacttgtatnnnnnnn-ttggaatt |
184 |
Q |
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| T |
5612028 |
gaaaattcagataatccaataacatattctaacacccactacacatactttttattaaactcgtgtaatgttttatacttgtataaaagaaattggaatt |
5611929 |
T |
|
| Q |
185 |
ctactcattatatatt----ggaggtatcnnnnnnnnnnnnnnnnnnnnnnnagcataagactaatttatctaccaactctccaacatagagattcagta |
280 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5611928 |
ctactcattatatattggagggaggtatcattttattttattttcattttttagcataagactaatttatctaccaactctccaacccagagattcagta |
5611829 |
T |
|
| Q |
281 |
gaatctaaaagaggtcatatgttttttgagagtaaccaacgagggggatcaagtcaacct-agcatgtgaatatgcactcattcaaacacaaacttcgat |
379 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5611828 |
gaatctaaaagaggacatatgttttttgagagtaaccaacgagggggatcaagtcaaccttagcatgtgaatatgcactcattcaaacacaaacttcgat |
5611729 |
T |
|
| Q |
380 |
ggatttgatgaatttattttgcaacaatcattttatgttcttatagtgacctcacacataataatatttgttactataaagcatgtgattaggtaggtta |
479 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5611728 |
ggatttgatgaatttattttgcaacaatcattttatgttcttatagtgacctcacacataataatatttgttactataaagcatgtgattaggtaggtta |
5611629 |
T |
|
| Q |
480 |
ggaagtatcttacacatgcttgcaatcttaatataaacacaagatacaatcttattcaaacttcttataatgtactatagannnnnnngtagtatactag |
579 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5611628 |
ggaagtatcttacacatgcttgcaatcttaaaataaacacaagatacaatcttattcaaacttcttataatgtactataga-ttttttgtagtatactag |
5611530 |
T |
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| Q |
580 |
acatgattaataacataatattcctttttccctttaataatgattcttttccattgtgaaattagtggggttcat |
654 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||| |
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| T |
5611529 |
acatgattaataacataatattcctttttccctttaattatgattcttttccattgtgcaattaatggggttcat |
5611455 |
T |
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