View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7626_low_10 (Length: 354)
Name: NF7626_low_10
Description: NF7626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7626_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 27873964 - 27874284
Alignment:
| Q |
13 |
aatatatcataaagacttcataactaattatattctgtgacatcaccattaatttcatttatttactcacatatttgatttctcaaatcataataaatta |
112 |
Q |
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| T |
27873964 |
aatatatcataaagacttcataactaattatattctgtgacatcaccattaatttcatttatttactcacatatttgatttctcaaatc---ataaatta |
27874060 |
T |
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| Q |
113 |
aatcatgtagatttctatgtt--------ttaaaatatcattgtgtaaaaagaaatatttaaaagatcatatgcacaccaatttacatttttattatggt |
204 |
Q |
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| T |
27874061 |
aatcatgtagatttctatgtttaatagtattaaaatatcattgtgtaaaatgaaatatttaaaacatcatatgcacaccaatttacatttttattatggt |
27874160 |
T |
|
| Q |
205 |
gtagtattagtatttaatttagnnnnnnnaaccgtgttctcgtgcgttctggtgcaccgattagtatgaccttttattaattgaattttgttttctggat |
304 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27874161 |
gtagtattagtatttaatttaatttttttaaccgt----------attctggtgcaccgattagtatgaccttttattaattgaattttgttttcttgat |
27874250 |
T |
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| Q |
305 |
gtagtcagggaaagtatatattcaaagatgcaac |
338 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
27874251 |
gtagtcaggaaaagtatatattcaaagatgcaac |
27874284 |
T |
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