View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7626_low_15 (Length: 264)
Name: NF7626_low_15
Description: NF7626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7626_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 3 - 236
Target Start/End: Original strand, 9451458 - 9451690
Alignment:
| Q |
3 |
cttccctgcattaagattagggaaaagagagattaatgtgaaataatataacataaatatcaataacagagttcgattaattttggctacatcttaggac |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9451458 |
cttccctgcattaagattagggaaaagagagattaatatgaaataatataacataaatatcaataacagagttcgattaaatttggctacatcttaggac |
9451557 |
T |
|
| Q |
103 |
tgtttgcatacttttcaatt-aaaagaaaaatgtatataaagtatttacaatcactcacaaaagagcatttaagcctaaaaataattatcttgttggcta |
201 |
Q |
| |
|
|| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9451558 |
tg-ttgcagacttttcaattgaaaagaaaaatatatataaagtatttacaatcattcacaaaagagcatttaagcctaaaaataattatcatgttggcta |
9451656 |
T |
|
| Q |
202 |
attgatagggaagcgtatagttactacatgtgtgt |
236 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
9451657 |
attgatagggaagcgtatag-tactacatgtgtgt |
9451690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 9428580 - 9428726
Alignment:
| Q |
1 |
aacttccctgcattaagattagggaaaagagagattaatgtgaaataatataacataaatatcaataa-cagagttcgattaattttggctacatcttag |
99 |
Q |
| |
|
||||||||||||||||||| ||| || |||||||||||||||||||||||||||||| ||||| |||| |||||||||||||| || |||||||||||| |
|
|
| T |
9428580 |
aacttccctgcattaagataagg-aagagagagattaatgtgaaataatataacatagatatcgataatcagagttcgattaaaattagctacatcttag |
9428678 |
T |
|
| Q |
100 |
gactgtttgcatacttttcaatt-aaaagaaaaatgtatataaagtatt |
147 |
Q |
| |
|
||||| ||||| ||||||| ||| |||||||||| ||||| ||||||| |
|
|
| T |
9428679 |
gactg-ttgcagacttttctattgcaaagaaaaatatatattaagtatt |
9428726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University