View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7626_low_2 (Length: 666)
Name: NF7626_low_2
Description: NF7626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7626_low_2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 1 - 665
Target Start/End: Complemental strand, 20596623 - 20595961
Alignment:
| Q |
1 |
tcatgggcataatcatatattctggtgtactgctccctaaaggatccatccaccaaatcaatagccttacctctagctctgtaagccttactccagcaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20596623 |
tcatgggcataatcatatattctggtgtactgctccctaaaggatccatccaccaaatcaatagccttacctctagctctgtaagccttactccaacaca |
20596524 |
T |
|
| Q |
101 |
cccccatgttccatttttcatgagctctagtcacaatagtctttaattgcaagtttggattctctttcacccttgaatgcagcttatcacccaaccaatc |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
20596523 |
cccccatgttccatttttcatgaactctagtcacaatagtctttaactgcaagtttgaattctttttcacccttgaatgcagcttatcacccaaccaatc |
20596424 |
T |
|
| Q |
201 |
tgagttcattatccttagcttgtactccctattgcaagtgtgtttaccctttatcctcctcaattgccatgttttctcacctggtatttttacacagtgc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20596423 |
tgagttcattatccttagcttgtactccctactgcaagtgtgtttaccctttatcctcctcaattgccatgtttcctcacctggtatttttacacagtgc |
20596324 |
T |
|
| Q |
301 |
atctgactctcacatgaacccttcttcccacgataaattaccttcaccctccttttatcattcttaagaaactttaaattcctaccagaatgtacaacaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||| |
|
|
| T |
20596323 |
atctgactctcacatgaacccttcttcccacgacaaattaccttcaccctccttttatcattcttatcaaactttaaattcctgccagaatgtacagcaa |
20596224 |
T |
|
| Q |
401 |
atgttcttacagcatcttgaaattccttctttgacacaaaataagtccctacctcccactcatagtcacgcttgttttcaggtttcttaaatgtggcaaa |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20596223 |
atgttcttacagcatcttgaaattccttctttgacacaaaataagtccctacctcccactc--agtcacgcatgttttcaggtttcttaaatgtggcaaa |
20596126 |
T |
|
| Q |
501 |
cttaagcttactcccaccattttcctcttcctcttcactttcaggttcactctctaacacatcattgttatactcctcttcctcaactctgactatgcta |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20596125 |
cttaagcttactcccaccattttcctcttcctcttcactttcaggtccactctctaacatatcactgttatactcctcttcctcaactctgactatgcta |
20596026 |
T |
|
| Q |
601 |
gattgaccaacagtttggtttgtgttaatttgctcatccactacctcatcatcaaacacaggttc |
665 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20596025 |
gattgaccaatagtttggtttgtgttaatttgctcatccactacctcatcatcaaacacaggttc |
20595961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 1 - 665
Target Start/End: Complemental strand, 8697624 - 8696960
Alignment:
| Q |
1 |
tcatgggcataatcatatattctggtgtactgctccctaaaggatccatccaccaaatcaatagccttacctctagctctgtaagccttactccagcaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
8697624 |
tcatgggcataatcatatattctggtgtactgctccctaaaggatccatccaccaaatcaatagccttacctctagctctataagccttactccaacaca |
8697525 |
T |
|
| Q |
101 |
cccccatgttccatttttcatgagctctagtcacaatagtctttaattgcaagtttggattctctttcacccttgaatgcagcttatcacccaaccaatc |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8697524 |
ccctcatgttccatttttcatgagctctagtcacaatagtctttaactgcaagcttggattctctttcacccttgaatgcagcttatcacctaaccaatc |
8697425 |
T |
|
| Q |
201 |
tgagttcattatccttagcttgtactccctattgcaagtgtgtttaccctttatcctcctcaattgccatgttttctcacctggtatttttacacagtgc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
8697424 |
tgagttcattatccttagcttgtactccctactgcaagtgtgtttaccctttatcctcctcaattgccatgtttcctcatctggtatttttacacagtgc |
8697325 |
T |
|
| Q |
301 |
atctgactctcacatgaacccttcttcccacgataaattaccttcaccctccttttatcattcttaagaaactttaaattcctaccagaatgtacaacaa |
400 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||| |
|
|
| T |
8697324 |
atttgactctcacatgaacccttcttcccacgacatattaccttcaccctccttttatcattcttaacaaactttaaattcctgccagaatgtacagcaa |
8697225 |
T |
|
| Q |
401 |
atgttcttacagcatcttgaaattccttctttgacacaaaataagtccctacctcccactcatagtcacgcttgttttcaggtttcttaaatgtggcaaa |
500 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
8697224 |
atgttctaacagcatcttgaaattccttctttgacacaaaataagtccctacctcccactcatagtcacgcatattttcaggtttcttaaatgtggcaaa |
8697125 |
T |
|
| Q |
501 |
cttaagcttactcccaccattttcctcttcctcttcactttcaggttcactctctaacacatcattgttatactcctcttcctcaactctgactatgcta |
600 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8697124 |
cttaagcttattcccaccattttcctcttcatcttcactttcagctccactctctaacacatcactgttatactcctcttcctcaactctgactatgcta |
8697025 |
T |
|
| Q |
601 |
gattgaccaacagtttggtttgtgttaatttgctcatccactacctcatcatcaaacacaggttc |
665 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8697024 |
gattgaccaacattttggtttgtgttagtttgctcacccactacctcatcatcaaacacaggttc |
8696960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 296
Target Start/End: Complemental strand, 23330837 - 23330698
Alignment:
| Q |
157 |
ggattctctttcacccttgaatgcagcttatcacccaaccaatctgagttcattatccttagcttgtactccctattgcaagtgtgtttaccctttatcc |
256 |
Q |
| |
|
||||| || |||||||||||||| |||||| |||||||||| ||||| ||||| ||||| | ||| | | ||| |||| | ||||| |||||||||| |
|
|
| T |
23330837 |
ggattgtccttcacccttgaatgtagcttaccacccaaccattctgaattcatcatcctgaccttaaatgctctagtgcagctatgttttccctttatcc |
23330738 |
T |
|
| Q |
257 |
tcctcaattgccatgttttctcacctggtatttttacaca |
296 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |||||||| |
|
|
| T |
23330737 |
tcctcaattgccatgtttcttcatttggtatctttacaca |
23330698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 24505667 - 24505591
Alignment:
| Q |
10 |
taatcatatattctggtgtactgctccctaaaggatccatccaccaaatcaatagccttacctctagctctgtaagc |
86 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| || ||||| | || ||| || |||||| |||||||||| ||||| |
|
|
| T |
24505667 |
taatcatatatcctggtatactgatccctaaaagacccatcaatcatatctattgccttagctctagctctataagc |
24505591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 34896618 - 34896694
Alignment:
| Q |
10 |
taatcatatattctggtgtactgctccctaaaggatccatccaccaaatcaatagccttacctctagctctgtaagc |
86 |
Q |
| |
|
|||||||||| ||||| || |||||||| || |||||||| | || ||| || ||||||||||||||||| ||||| |
|
|
| T |
34896618 |
taatcatatagcctggtatattgctccctgaaagatccatcaatcacatctattgccttacctctagctctataagc |
34896694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 296
Target Start/End: Complemental strand, 20622454 - 20622315
Alignment:
| Q |
157 |
ggattctctttcacccttgaatgcagcttatcacccaaccaatctgagttcattatccttagcttgtactccctattgcaagtgtgtttaccctttatcc |
256 |
Q |
| |
|
||||| || |||||||||||||| |||||| |||||||||| |||| ||||| ||||| | ||| | | ||| |||| | ||||| |||||||||| |
|
|
| T |
20622454 |
ggattgtccttcacccttgaatgtagcttaccacccaaccatgctgaattcatcatcctgaccttaaatgctctagtgcagctatgttttccctttatcc |
20622355 |
T |
|
| Q |
257 |
tcctcaattgccatgttttctcacctggtatttttacaca |
296 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |||||||| |
|
|
| T |
20622354 |
tcctcaattgccatgtttcttcatttggtatctttacaca |
20622315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 467
Target Start/End: Original strand, 37104373 - 37104437
Alignment:
| Q |
403 |
gttcttacagcatcttgaaattccttctttgacacaaaataagtccctacctcccactcatagtc |
467 |
Q |
| |
|
||||| || ||||||||||| | |||||| |||||||||| |||||| ||||||| |||||||| |
|
|
| T |
37104373 |
gttctcaccgcatcttgaaactgcttcttaaacacaaaatatgtccctgcctcccattcatagtc |
37104437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 23706369 - 23706425
Alignment:
| Q |
34 |
tccctaaaggatccatccaccaaatcaatagccttacctctagctctgtaagcctta |
90 |
Q |
| |
|
|||||||| || |||||||| |||||||| || || ||||||||||||||||||||| |
|
|
| T |
23706369 |
tccctaaatgacccatccactaaatcaattgcttttcctctagctctgtaagcctta |
23706425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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