View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7626_low_5 (Length: 428)

Name: NF7626_low_5
Description: NF7626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7626_low_5
NF7626_low_5
[»] chr1 (6 HSPs)
chr1 (1-409)||(24321913-24322344)
chr1 (66-238)||(24415459-24415630)
chr1 (66-238)||(24309799-24309971)
chr1 (66-228)||(24366787-24366950)
chr1 (66-246)||(24340028-24340208)
chr1 (1-59)||(24310001-24310059)
[»] chr4 (28 HSPs)
chr4 (151-247)||(45372426-45372522)
chr4 (180-299)||(48148083-48148202)
chr4 (180-254)||(48862847-48862921)
chr4 (151-244)||(7771020-7771113)
chr4 (180-255)||(48735713-48735788)
chr4 (151-244)||(7789705-7789798)
chr4 (151-238)||(48870164-48870251)
chr4 (151-238)||(48885850-48885937)
chr4 (159-237)||(48891032-48891110)
chr4 (151-240)||(7774198-7774287)
chr4 (159-255)||(48156804-48156900)
chr4 (180-255)||(45366619-45366694)
chr4 (180-238)||(33134224-33134282)
chr4 (159-241)||(49041515-49041597)
chr4 (180-244)||(7238118-7238182)
chr4 (151-243)||(7904649-7904741)
chr4 (183-243)||(48902567-48902627)
chr4 (151-244)||(7800253-7800346)
chr4 (151-244)||(7822585-7822678)
chr4 (186-255)||(45385191-45385260)
chr4 (180-237)||(48170987-48171044)
chr4 (180-244)||(7813096-7813160)
chr4 (151-243)||(7877337-7877429)
chr4 (180-232)||(48875474-48875526)
chr4 (180-247)||(33133650-33133717)
chr4 (151-253)||(7907932-7908034)
chr4 (180-244)||(50251206-50251270)
chr4 (180-244)||(50668659-50668723)
[»] chr8 (5 HSPs)
chr8 (119-244)||(15348478-15348603)
chr8 (159-255)||(12199912-12200008)
chr8 (159-255)||(12444340-12444436)
chr8 (180-255)||(12194906-12194981)
chr8 (180-255)||(12439334-12439409)
[»] chr5 (5 HSPs)
chr5 (180-255)||(29712867-29712942)
chr5 (180-247)||(42562729-42562796)
chr5 (186-255)||(29687656-29687725)
chr5 (180-232)||(178647-178699)
chr5 (183-255)||(29695757-29695829)
[»] scaffold0508 (1 HSPs)
scaffold0508 (180-246)||(11876-11942)
[»] chr3 (4 HSPs)
chr3 (180-244)||(11024935-11024999)
chr3 (180-244)||(11006360-11006424)
chr3 (180-244)||(11015923-11015987)
chr3 (180-244)||(47452305-47452369)


Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 24322344 - 24321913
Alignment:
Q  1 tctacatgaacctctaactttaagatcaaaataagatttaggaagcgaaaaattagggt-cagtaga----------------------acaatgaatct 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||                      |||||||||||    
T  24322344 tctacatgaacctctaactttaagatcaaaataagatttaggaagcaaaaaattagggtccagtagaacaggagcagaatcagtggtgaacaatgaatct 24322245  T
Q  78 aaaggtatagatcgaaattgaggagtttctgttacaaaaagaattcgacgagtgtgtgttgcagcagtattcagaaactgtgaatttacaaaacgaggat 177  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24322244 aaaggtatagatcgaaattgaggaatttctgttacaaacagaattcgacgagtgtgtgttgcagcagtattcagaaactgtgaatttgcaaaacgaggat 24322145  T
Q  178 ttgagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaaccttagaaggatttcagttaccaattattcaggcag 277  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24322144 ttgagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcaccagcaaccttagaaggatttcagttaccaattattcaggcag 24322045  T
Q  278 acacggcagtgccgttgtctccttctcctccatgcgtctttctcttttactcggtgatgttttagagatcaattcatcgggcaaatacagtggtagatcc 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||    
T  24322044 acacggcagtgccgttgtctccttctcctccatgcgtctttctcttttactcagtgatgttttagagatcaattcatcgggcaaatacggtggtggatcc 24321945  T
Q  378 gcctccattcacgcgtcttctgtcactactac 409  Q
    ||||||||||||||||||||||||||||||||    
T  24321944 gcctccattcacgcgtcttctgtcactactac 24321913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 66 - 238
Target Start/End: Complemental strand, 24415630 - 24415459
Alignment:
Q  66 aacaatgaatctaaaggtatagatcgaaattgaggagtttctgttacaaaaagaattcgacgagtgtgtgttgcagcagtattcagaaactgtgaattta 165  Q
    ||||||||||| |||| ||| ||||||| || || ||| |||||||| || |||||||||||||||||||||||||||||| || ||||||||||||||     
T  24415630 aacaatgaatccaaagctatggatcgaagttcagaagtctctgttacgaacagaattcgacgagtgtgtgttgcagcagtaatctgaaactgtgaatttg 24415531  T
Q  166 caaaacgaggatttgagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccgg 238  Q
    ||||||  |||||||| ||||||||||||||||||| || ||||||||||||| ||||||||||||| |||||    
T  24415530 caaaac-tggatttgaaataagagaaaaccaagacttacgaacgcatttgaaacgaataagagacttaaccgg 24415459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 66 - 238
Target Start/End: Complemental strand, 24309971 - 24309799
Alignment:
Q  66 aacaatgaatctaaaggtatagatcgaaattgaggagtttctgttacaaaaagaattcgacgagtgtgtgttgcagcagtattcagaaactgtgaattta 165  Q
    |||||||||||||||| |||||||||||||| |||| || ||||||  || ||||||| ||| |||||||||| || ||||    |||| |||||||||     
T  24309971 aacaatgaatctaaagctatagatcgaaattcaggaattcctgttatgaagagaattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttg 24309872  T
Q  166 caaaacgaggatttgagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccgg 238  Q
    ||||  ||| ||  |||||||||||||||||  ||| ||||||| |||||||| ||||||||||||| |||||    
T  24309871 caaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccgg 24309799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 66 - 228
Target Start/End: Complemental strand, 24366950 - 24366787
Alignment:
Q  66 aacaatgaatctaaagg-tatagatcgaaattgaggagtttctgttacaaaaagaattcgacgagtgtgtgttgcagcagtattcagaaactgtgaattt 164  Q
    ||||||||||||||| | ||||||| |||||||| || ||  ||| |  || |||||| || || ||||||||||||||||| || ||||||||||||||    
T  24366950 aacaatgaatctaaaagctatagattgaaattgatgatttggtgtcaagaacagaatttgatgattgtgtgttgcagcagtaatctgaaactgtgaattt 24366851  T
Q  165 acaaaacgaggatttgagataagagaaaaccaagactcacaaacgcatttgaaatgaataagag 228  Q
     ||||   |||||||||||||||||||||||| ||||  ||||| ||||||||| |||| ||||    
T  24366850 gcaaagtaaggatttgagataagagaaaaccatgacttgcaaacacatttgaaacgaatcagag 24366787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 66 - 246
Target Start/End: Complemental strand, 24340208 - 24340028
Alignment:
Q  66 aacaatgaatctaaaggtatagatcgaaattgaggagtttctgttacaaaaagaattcgacgagtgtgtgttgcagcagtattcagaaactgtgaattta 165  Q
    ||||| ||||||| || |||| ||||||| | ||||||| |||| |  || ||||||| | ||||||||||||||||||||    |||| |||||||||     
T  24340208 aacaacgaatctacagctatatatcgaaactcaggagttgctgtcaggaagagaattctaagagtgtgtgttgcagcagtaacttgaaagtgtgaatttg 24340109  T
Q  166 caaaacgaggatttgagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaacctta 246  Q
    ||||  ||  ||  |||||||| |||||||| |||| ||||||  |||||||| ||||||||||||| ||||| |||||||    
T  24340108 caaagtgattatcagagataagtgaaaaccatgacttacaaacagatttgaaacgaataagagacttaaccggtaacctta 24340028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 24310059 - 24310001
Alignment:
Q  1 tctacatgaacctctaactttaagatcaaaataagatttaggaagcgaaaaattagggt 59  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||   |||||||||||    
T  24310059 tctacatgaacctataactttaagatcaaaatgagatttaggaagatcaaaattagggt 24310001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 151 - 247
Target Start/End: Original strand, 45372426 - 45372522
Alignment:
Q  151 gaaactgtgaatttacaaaacgaggatttgagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaaccttag 247  Q
    |||| ||||||||| ||||| ||||||  ||||||| |||||||||||||| |||||| ||||||||| | ||||||||||||||||||||||||||    
T  45372426 gaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaaccttag 45372522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 180 - 299
Target Start/End: Original strand, 48148083 - 48148202
Alignment:
Q  180 gagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaaccttagaaggatttcagttaccaattattcaggcagac 279  Q
    |||||||||||||||||||||| ||| || ||||||||| |||||||||||||||| || ||||||  |||||||| |  || |||||  ||||||||||    
T  48148083 gagataagagaaaaccaagacttacagacacatttgaaacgaataagagacttcactggtaaccttgaaaggatttgaactatcaattcatcaggcagac 48148182  T
Q  280 acggcagtgccgttgtctcc 299  Q
    ||||||||||| | ||||||    
T  48148183 acggcagtgccatcgtctcc 48148202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 48862921 - 48862847
Alignment:
Q  180 gagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaaccttagaaggatt 254  Q
    ||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||| |||||||| ||||||    
T  48862921 gagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcaccggtaaccttagcaggatt 48862847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 151 - 244
Target Start/End: Complemental strand, 7771113 - 7771020
Alignment:
Q  151 gaaactgtgaatttacaaaacgaggatttgagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaacct 244  Q
    |||| ||||||||| ||||  ||||||  |||||||||||||||||||||| ||||||||||||||||   |||||||||||||||||||||||    
T  7771113 gaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacct 7771020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 48735713 - 48735788
Alignment:
Q  180 gagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaaccttagaaggattt 255  Q
    |||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||| ||||| ||||| ||||    
T  48735713 gagataagagaaaaccaagacttacaaacacatttgaaacgaataagagacttcaccggtaacctcagaagaattt 48735788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 151 - 244
Target Start/End: Complemental strand, 7789798 - 7789705
Alignment:
Q  151 gaaactgtgaatttacaaaacgaggatttgagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaacct 244  Q
    |||| ||||||||| ||||  ||||||  ||||||| |||||||||||||| ||||||||||||||||   |||||||||||||||||||||||    
T  7789798 gaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacct 7789705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 48870251 - 48870164
Alignment:
Q  151 gaaactgtgaatttacaaaacgaggatttgagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccgg 238  Q
    |||| ||||||||| ||||| | ||||  ||||||||| |||||||||||| |||||||||||||||| |||||||||| ||||||||    
T  48870251 gaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccgg 48870164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 48885937 - 48885850
Alignment:
Q  151 gaaactgtgaatttacaaaacgaggatttgagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccgg 238  Q
    |||| ||||||||| ||||| | ||||  ||||||||| |||||||||||| |||||||||||||||| |||||||||| ||||||||    
T  48885937 gaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccgg 48885850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 48891110 - 48891032
Alignment:
Q  159 gaatttacaaaacgaggatttgagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccg 237  Q
    |||||| ||||| |||||| ||||| ||||||||||||||||| |||||||||||||||| | ||||||||||| ||||    
T  48891110 gaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccg 48891032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 151 - 240
Target Start/End: Original strand, 7774198 - 7774287
Alignment:
Q  151 gaaactgtgaatttacaaaacgaggatttgagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggca 240  Q
    |||| ||||||||| ||||| | ||||  |||||||||||||||||   || |||||| |||||||||||||||||||||||||||||||    
T  7774198 gaaaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaacacatttgaaatgaataagagacttcaccggca 7774287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 48156804 - 48156900
Alignment:
Q  159 gaatttacaaaacgaggatttgagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaaccttagaaggattt 255  Q
    |||||| ||||| ||| ||  |||||||||||||||||||||| ||||||||| |||||| | | ||||||||||||||| |||| || ||||||||    
T  48156804 gaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaaccataaaaggattt 48156900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 45366619 - 45366694
Alignment:
Q  180 gagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaaccttagaaggattt 255  Q
    |||||||||||||||||| ||| ||||||||| |||||| | |||||||||||||| || |||||||| |||||||    
T  45366619 gagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaaccttagtaggattt 45366694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 33134224 - 33134282
Alignment:
Q  180 gagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccgg 238  Q
    |||||||||||||| |||| || |||||||||||||||| |||||||||||||||||||    
T  33134224 gagataagagaaaatcaaggcttacaaacgcatttgaaacgaataagagacttcaccgg 33134282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 49041515 - 49041597
Alignment:
Q  159 gaatttacaaaacgaggatttgagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaa 241  Q
    |||||| ||||| | ||||  ||||||||||||||||||||||  |||||||||||||||  ||||||||||||||| |||||    
T  49041515 gaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaacaaataagagacttcactggcaa 49041597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 7238118 - 7238182
Alignment:
Q  180 gagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaacct 244  Q
    |||||||||||||||||||||| |||||| |||||||||   |||||||||||||| ||||||||    
T  7238118 gagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcactggcaacct 7238182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 7904741 - 7904649
Alignment:
Q  151 gaaactgtgaatttacaaaacgaggatttgagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaacc 243  Q
    |||| ||||||||| ||||  ||||||  |||||||||||||||||  ||| |||||| ||||||||| | |||||||||||||| |||||||    
T  7904741 gaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcacaggcaacc 7904649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 48902627 - 48902567
Alignment:
Q  183 ataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaacc 243  Q
    ||||||||||||||||||| |||||| ||||||||| |||| |||||||| ||||||||||    
T  48902627 ataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccggcaacc 48902567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 244
Target Start/End: Complemental strand, 7800346 - 7800253
Alignment:
Q  151 gaaactgtgaatttacaaaacgaggatttgagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaacct 244  Q
    |||| ||||||||| |||| || ||||  |||| |||||||||||| || | |||||| || |||||| | |||||| ||||||||||||||||    
T  7800346 gaaattgtgaatttgcaaagcggggatcagagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacct 7800253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 244
Target Start/End: Complemental strand, 7822678 - 7822585
Alignment:
Q  151 gaaactgtgaatttacaaaacgaggatttgagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaacct 244  Q
    |||| ||||||||| ||||  | ||||  ||||||||||||||||| || | |||||| || |||||| | |||||| ||||||||||||||||    
T  7822678 gaaattgtgaatttgcaaagtggggatcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacct 7822585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 45385191 - 45385260
Alignment:
Q  186 agagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaaccttagaaggattt 255  Q
    |||||||||||||||| ||||||| |||||||| | || |||||||| || || |||||||| |||||||    
T  45385191 agagaaaaccaagacttacaaacggatttgaaacgtatgagagacttaactggtaaccttagtaggattt 45385260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 48170987 - 48171044
Alignment:
Q  180 gagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccg 237  Q
    |||||||||| ||||||||||| |||||| ||||||||| | | ||||||||||||||    
T  48170987 gagataagagcaaaccaagacttacaaacacatttgaaacgtagaagagacttcaccg 48171044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 7813160 - 7813096
Alignment:
Q  180 gagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaacct 244  Q
    ||||||||||||||||| || | |||||| || |||||| | |||||| ||||||||||||||||    
T  7813160 gagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacct 7813096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 7877429 - 7877337
Alignment:
Q  151 gaaactgtgaatttacaaaacgaggatttgagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaacc 243  Q
    |||| ||||||||| |||||   ||||  |||||||||||||||||   || ||||| |||||||||| | ||||||||||||||| ||||||    
T  7877429 gaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccagcaacc 7877337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 48875526 - 48875474
Alignment:
Q  180 gagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagactt 232  Q
    ||||| ||||||||||||||||  ||||||||||||||| |||| ||||||||    
T  48875526 gagatgagagaaaaccaagacttgcaaacgcatttgaaacgaattagagactt 48875474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 33133717 - 33133650
Alignment:
Q  180 gagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaaccttag 247  Q
    ||||||||||||||||||  || ||||| | |||||||| |||||||||||||||  || ||||||||    
T  33133717 gagataagagaaaaccaaagcttacaaatgaatttgaaacgaataagagacttcattggtaaccttag 33133650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 253
Target Start/End: Complemental strand, 7908034 - 7907932
Alignment:
Q  151 gaaactgtgaatttacaaaacgaggatttgagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaaccttagaag 250  Q
    |||| ||||||||| ||||| | |||   ||||||||||||||||| |||| || |||  | |||||| |  |||||||||||||||||||||| || ||    
T  7908034 gaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaacctcagtag 7907935  T
Q  251 gat 253  Q
    |||    
T  7907934 gat 7907932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 50251206 - 50251270
Alignment:
Q  180 gagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaacct 244  Q
    |||||||||||||||||||||| | |||| || || || || ||||||| |||||| ||||||||    
T  50251206 gagataagagaaaaccaagacttagaaacccactttaattgtataagagccttcactggcaacct 50251270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 50668723 - 50668659
Alignment:
Q  180 gagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaacct 244  Q
    ||||| |||||||||||||| | ||||||||| |||||| | |||||| | ||||| ||||||||    
T  50668723 gagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacct 50668659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 119 - 244
Target Start/End: Complemental strand, 15348603 - 15348478
Alignment:
Q  119 aattcgacgagtgtgtgttgcagcagtattcagaaactgtgaatttacaaaacgaggatttgagataagagaaaaccaagactcacaaacgcatttgaaa 218  Q
    ||||| ||||||||||||||| || ||| |  |||| ||||||||| | ||   |||||  |||||||||||||||||||||| ||||||||||||||||    
T  15348603 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 15348504  T
Q  219 tgaataagagacttcaccggcaacct 244  Q
     | ||||||||||||||||| |||||    
T  15348503 cgtataagagacttcaccggtaacct 15348478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 255
Target Start/End: Complemental strand, 12200008 - 12199912
Alignment:
Q  159 gaatttacaaaacgaggatttgagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaaccttagaaggattt 255  Q
    |||||| ||||  ||||||  ||||||||||||||||| |||| |||||| |||||||||   | ||||||||||||||||||||| || |||||||    
T  12200008 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggattt 12199912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 255
Target Start/End: Complemental strand, 12444436 - 12444340
Alignment:
Q  159 gaatttacaaaacgaggatttgagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaaccttagaaggattt 255  Q
    |||||| ||||  ||||||  ||||||||||||||||| |||| |||||| |||||||||   | ||||||||||||||||||||| || |||||||    
T  12444436 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggattt 12444340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 12194981 - 12194906
Alignment:
Q  180 gagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaaccttagaaggattt 255  Q
    ||||||||||| ||||| |||| ||||| ||||||||||   | ||||||||||||||||||||| || |||||||    
T  12194981 gagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggattt 12194906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 12439409 - 12439334
Alignment:
Q  180 gagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaaccttagaaggattt 255  Q
    ||||||||||| ||||| |||| ||||| ||||||||||   | ||||||||||||||||||||| || |||||||    
T  12439409 gagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggattt 12439334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 29712867 - 29712942
Alignment:
Q  180 gagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaaccttagaaggattt 255  Q
    |||||||||||||||||  ||| ||||||||| |||||| ||||||||||||||||||| ||| ||| ||||||||    
T  29712867 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggattt 29712942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 42562729 - 42562796
Alignment:
Q  180 gagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaaccttag 247  Q
    ||||| |||||||||||||||| |||||||||||||||| |||||||||| |||||||| ||| ||||    
T  42562729 gagattagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtaacattag 42562796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 29687725 - 29687656
Alignment:
Q  186 agagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaaccttagaaggattt 255  Q
    |||||||||||||||| |||||| || |||||  | |||||||||||||| || ||| ||||||||||||    
T  29687725 agagaaaaccaagacttacaaacacacttgaagcgtataagagacttcactggtaactttagaaggattt 29687656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 178699 - 178647
Alignment:
Q  180 gagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagactt 232  Q
    ||||| ||||| |||||||||| |||||| ||||||||| |||||||||||||    
T  178699 gagatgagagataaccaagacttacaaacacatttgaaacgaataagagactt 178647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 29695829 - 29695757
Alignment:
Q  183 ataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaaccttagaaggattt 255  Q
    |||||||| |||||  ||| |||||||||||||||| ||||||||||||| || || |||||||  |||||||    
T  29695829 ataagagataaccataacttacaaacgcatttgaaacgaataagagacttgactggtaaccttaataggattt 29695757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 11942 - 11876
Alignment:
Q  180 gagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaacctta 246  Q
    ||||||||||||||||| |||| ||||||| |||||||| | ||||||||||| | ||| |||||||    
T  11942 gagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaatcggtaacctta 11876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 11024935 - 11024999
Alignment:
Q  180 gagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaacct 244  Q
    ||||||||||  ||||| |||| |||||||||||||||| | || |||||||||||||| |||||    
T  11024935 gagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacct 11024999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 11006360 - 11006424
Alignment:
Q  180 gagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaacct 244  Q
    ||||||||||  ||||| |||| |||||| || |||||| | ||||| |||||||||||||||||    
T  11006360 gagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacct 11006424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 11015923 - 11015987
Alignment:
Q  180 gagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaacct 244  Q
    ||||||||||  ||| | |||| |||||||||||||||| | || |||||||||||||| |||||    
T  11015923 gagataagagctaacaatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacct 11015987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 47452305 - 47452369
Alignment:
Q  180 gagataagagaaaaccaagactcacaaacgcatttgaaatgaataagagacttcaccggcaacct 244  Q
    ||||||||||||||||| |||| | ||| ||| |||||  | | |||||||||||||||||||||    
T  47452305 gagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacct 47452369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University