View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7626_low_7 (Length: 399)

Name: NF7626_low_7
Description: NF7626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7626_low_7
NF7626_low_7
[»] chr7 (21 HSPs)
chr7 (10-383)||(4507698-4508072)
chr7 (229-357)||(36277225-36277348)
chr7 (274-345)||(26239960-26240027)
chr7 (231-345)||(29469578-29469688)
chr7 (279-345)||(43688208-43688270)
chr7 (229-338)||(21861509-21861614)
chr7 (305-352)||(32879686-32879733)
chr7 (279-338)||(3520089-3520144)
chr7 (271-326)||(4454768-4454819)
chr7 (257-303)||(21473092-21473138)
chr7 (273-344)||(23796227-23796294)
chr7 (274-345)||(29469813-29469880)
chr7 (265-303)||(40898750-40898788)
chr7 (227-325)||(48243058-48243152)
chr7 (284-345)||(2404228-2404285)
chr7 (284-345)||(3038138-3038195)
chr7 (231-303)||(31257032-31257104)
chr7 (305-345)||(33996150-33996190)
chr7 (232-345)||(44874348-44874457)
chr7 (229-338)||(47710423-47710528)
chr7 (229-338)||(47722079-47722184)
[»] chr6 (16 HSPs)
chr6 (229-345)||(6054376-6054488)
chr6 (229-338)||(6542942-6543047)
chr6 (226-345)||(4868573-4868688)
chr6 (231-349)||(12330180-12330294)
chr6 (229-345)||(9705227-9705339)
chr6 (229-345)||(13353174-13353286)
chr6 (229-345)||(33796299-33796411)
chr6 (286-345)||(3680219-3680274)
chr6 (286-345)||(12199861-12199916)
chr6 (306-344)||(19648313-19648351)
chr6 (274-345)||(31961151-31961218)
chr6 (277-353)||(466294-466368)
chr6 (235-345)||(12329949-12330055)
chr6 (231-345)||(12330292-12330401)
chr6 (310-338)||(12885273-12885301)
chr6 (228-345)||(25065092-25065205)
[»] chr5 (11 HSPs)
chr5 (284-352)||(1564621-1564685)
chr5 (229-346)||(15480294-15480407)
chr5 (265-338)||(15438857-15438926)
chr5 (265-338)||(17150268-17150337)
chr5 (274-338)||(18333509-18333569)
chr5 (229-345)||(41666756-41666868)
chr5 (229-345)||(41666992-41667104)
chr5 (229-303)||(60098-60172)
chr5 (284-345)||(2063787-2063844)
chr5 (229-338)||(13296653-13296757)
chr5 (229-338)||(20510641-20510746)
[»] chr8 (23 HSPs)
chr8 (231-344)||(422218-422327)
chr8 (274-353)||(29907770-29907845)
chr8 (274-352)||(34236692-34236766)
chr8 (229-345)||(11232428-11232540)
chr8 (231-345)||(5590369-5590479)
chr8 (274-352)||(38447471-38447545)
chr8 (228-345)||(15042668-15042781)
chr8 (229-338)||(20301241-20301346)
chr8 (229-338)||(21087873-21087978)
chr8 (305-352)||(5940024-5940071)
chr8 (229-345)||(11232193-11232305)
chr8 (229-345)||(24532420-24532532)
chr8 (305-352)||(28213392-28213439)
chr8 (229-345)||(39052928-39053040)
chr8 (311-345)||(4873534-4873568)
chr8 (253-303)||(6559472-6559522)
chr8 (274-353)||(7729906-7729981)
chr8 (279-345)||(12317019-12317081)
chr8 (231-345)||(28069358-28069468)
chr8 (307-352)||(36907501-36907546)
chr8 (305-345)||(5675805-5675845)
chr8 (304-336)||(8716096-8716128)
chr8 (305-345)||(31197588-31197628)
[»] scaffold0766 (1 HSPs)
scaffold0766 (233-345)||(6247-6355)
[»] chr3 (13 HSPs)
chr3 (305-344)||(46794028-46794067)
chr3 (229-344)||(45138970-45139081)
chr3 (233-343)||(45138805-45138911)
chr3 (244-332)||(1800201-1800285)
chr3 (229-345)||(22729073-22729185)
chr3 (228-345)||(35038192-35038305)
chr3 (229-354)||(54368481-54368601)
chr3 (229-345)||(54567865-54567977)
chr3 (274-345)||(35038472-35038539)
chr3 (274-303)||(21387366-21387395)
chr3 (274-352)||(30179752-30179826)
chr3 (288-345)||(34992523-34992576)
chr3 (305-345)||(38791521-38791561)
[»] chr2 (18 HSPs)
chr2 (306-353)||(10523218-10523265)
chr2 (229-345)||(16419475-16419587)
chr2 (228-345)||(5711437-5711550)
chr2 (229-345)||(40379208-40379320)
chr2 (229-345)||(40379443-40379555)
chr2 (285-338)||(789444-789495)
chr2 (279-338)||(14927082-14927137)
chr2 (246-345)||(16533520-16533615)
chr2 (274-345)||(17525382-17525449)
chr2 (274-345)||(17719373-17719440)
chr2 (229-303)||(17719577-17719651)
chr2 (229-332)||(25082536-25082635)
chr2 (274-345)||(37812542-37812609)
chr2 (271-345)||(33606095-33606165)
chr2 (228-345)||(36351923-36352037)
chr2 (228-345)||(15124546-15124659)
chr2 (265-327)||(15464760-15464818)
chr2 (231-303)||(36316052-36316124)
[»] chr1 (24 HSPs)
chr1 (284-352)||(17468310-17468374)
chr1 (229-345)||(35772237-35772349)
chr1 (229-345)||(40079125-40079237)
chr1 (228-338)||(42586437-42586542)
chr1 (229-338)||(25145484-25145589)
chr1 (229-345)||(2859391-2859503)
chr1 (274-345)||(7826075-7826142)
chr1 (274-345)||(15986377-15986444)
chr1 (279-345)||(20208575-20208637)
chr1 (274-355)||(4098446-4098522)
chr1 (305-345)||(7652291-7652331)
chr1 (244-345)||(3169973-3170071)
chr1 (265-345)||(25713366-25713442)
chr1 (279-343)||(52961557-52961617)
chr1 (229-344)||(4113005-4113116)
chr1 (278-345)||(26173504-26173567)
chr1 (229-303)||(26177154-26177228)
chr1 (274-345)||(38668333-38668400)
chr1 (226-345)||(39348115-39348230)
chr1 (305-335)||(42819283-42819313)
chr1 (274-345)||(52650815-52650882)
chr1 (305-338)||(33156949-33156982)
chr1 (231-344)||(17452680-17452789)
chr1 (99-171)||(26765951-26766022)
[»] chr4 (17 HSPs)
chr4 (271-345)||(31254448-31254518)
chr4 (274-352)||(44118903-44118977)
chr4 (305-353)||(44249078-44249126)
chr4 (265-345)||(27634116-27634192)
chr4 (263-345)||(35645798-35645876)
chr4 (227-299)||(53559287-53559359)
chr4 (229-345)||(22827511-22827623)
chr4 (305-352)||(28208405-28208452)
chr4 (229-345)||(35788632-35788744)
chr4 (274-345)||(22231117-22231184)
chr4 (274-345)||(39902607-39902674)
chr4 (231-345)||(21498327-21498437)
chr4 (257-338)||(400592-400669)
chr4 (98-158)||(29459597-29459657)
chr4 (305-353)||(41037094-41037142)
chr4 (229-338)||(50543329-50543434)
chr4 (228-345)||(53828287-53828400)
[»] scaffold0519 (2 HSPs)
scaffold0519 (229-345)||(1889-2001)
scaffold0519 (228-345)||(2124-2237)
[»] scaffold0692 (1 HSPs)
scaffold0692 (284-345)||(5808-5865)
[»] scaffold0041 (1 HSPs)
scaffold0041 (265-303)||(67496-67534)
[»] scaffold0129 (1 HSPs)
scaffold0129 (305-345)||(14511-14551)
[»] scaffold0005 (1 HSPs)
scaffold0005 (305-345)||(288728-288768)


Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 10 - 383
Target Start/End: Complemental strand, 4508072 - 4507698
Alignment:
Q  10 aagaatatactgtgctttttgttgtttagatcaaaccctttgtcaactgttattataattag--ggttttgataacaagtgtcttaaaatcactttttaa 107  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||  |||||||    
T  4508072 aagaaaatactgtgctttttgttgtttagatcaaaccctttgtcaactgctattataattagagggttttgataacaagtgtcttaaaatcgttttttaa 4507973  T
Q  108 gaatttttaatttaaaaactattcactgcaaaagtttaatacttcaattttttatagattgaattatacaagttctcataaaaagcttagtgcatttggg 207  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||  |||||||| || ||| |||||||||||| | ||||||||| ||    
T  4507972 gaatttttaatttaaaaactatttactgtaaaagtttaatacttcaatttttgatgcattgaattgtataagatctcataaaaagttgagtgcatttagg 4507873  T
Q  208 atggtcgttagcatttcttgttcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaa 307  Q
    |  |||||||||||||||||||||||||||| | | |||||||||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||    
T  4507872 acagtcgttagcatttcttgttcttagaaattgtggttgggtcttacacaacttcaaaaaactggtttgtaaggtaaggattgtccccacttataattaa 4507773  T
Q  308 acacattgtcagaccatctcttatccgatgtaggactcattaacacttgtatgtttacttacatacctttgagaat 383  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  4507772 acacattatcagaccatctcttatccgatgtaggactctttaacacttgtat-tttacttacatacctttgagaat 4507698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 357
Target Start/End: Original strand, 36277225 - 36277348
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||||| | ||||| || ||| |||| || ||||| |  |||| |||| |||||||||||||||||    ||||||||||||||| |||| |||    
T  36277225 tcttagaaatcgtggttgggactaacacaaccccacaaaatcgacttgtgaggtgaggattgcccccactta----taaacacattgtcaggccatgtct 36277320  T
Q  329 tatccgatgtaggactcattaacacttgt 357  Q
    | ||||||||  ||||| |||||||||||    
T  36277321 tgtccgatgtgagactc-ttaacacttgt 36277348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 345
Target Start/End: Original strand, 26239960 - 26240027
Alignment:
Q  274 ttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    |||| |||| ||||||||||||||||||||    ||||||||||||||||| || |||||||||| ||||||    
T  26239960 ttgtgaggtgaggattgcccccacttataa----acacattgtcagaccatgtcctatccgatgtcggactc 26240027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 345
Target Start/End: Complemental strand, 29469688 - 29469578
Alignment:
Q  231 ttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctctta 330  Q
    |||||||||| | ||||| || ||| |||| || ||||  || ||||||||| |||||||||||||||||    ||||||||||||||| |||| || |     
T  29469688 ttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtaaggtgaggattgcccccactta----taaacacattgtcaggccatgtcctg 29469593  T
Q  331 tccgatgtaggactc 345  Q
    |||||||| ||||||    
T  29469592 tccgatgtgggactc 29469578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 43688208 - 43688270
Alignment:
Q  279 aggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    ||||||||||||||||||||||    ||||||||||||||| |||| || |||||||||| ||||||    
T  43688208 aggtaaggattgcccccactta----taaacacattgtcaggccatgtcctatccgatgtgggactc 43688270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 338
Target Start/End: Complemental strand, 21861614 - 21861509
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||| | | ||||| || ||| |||| || ||||| || ||||||||| |||||||||||||||||    ||||||||||||||| |||| ||     
T  21861614 tcttagaaatggtggttgggcctaacacaaccccacaaaatcggcttgtaaggtgaggattgcccccactta----taaacacattgtcaggccatgtcc 21861519  T
Q  329 tatccgatgt 338  Q
    | ||||||||    
T  21861518 tgtccgatgt 21861509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 32879686 - 32879733
Alignment:
Q  305 taaacacattgtcagaccatctcttatccgatgtaggactcattaaca 352  Q
    ||||||||||||||| |||||||||| |||| || |||||||||||||    
T  32879686 taaacacattgtcaggccatctcttaaccgaagtgggactcattaaca 32879733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 338
Target Start/End: Original strand, 3520089 - 3520144
Alignment:
Q  279 aggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgt 338  Q
    |||| ||||||||||||||||||||    |||||||||||||||||| | ||||||||||    
T  3520089 aggtgaggattgcccccacttataa----acacattgtcagaccatcacctatccgatgt 3520144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 326
Target Start/End: Complemental strand, 4454819 - 4454768
Alignment:
Q  271 ggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatct 326  Q
    ||||||| |||| |||||||||||||||||    ||||||||||||||||||||||    
T  4454819 ggtttgtgaggtgaggattgcccccactta----taaacacattgtcagaccatct 4454768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 21473092 - 21473138
Alignment:
Q  257 aacctcaaaaaattggtttgtaaggtaaggattgcccccacttataa 303  Q
    ||||||| ||||||||||||| |||| |||||||| |||||||||||    
T  21473092 aacctcacaaaattggtttgtgaggtgaggattgctcccacttataa 21473138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 344
Target Start/End: Original strand, 23796227 - 23796294
Alignment:
Q  273 tttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggact 344  Q
    ||||| |||| | ||||||||||||||||||    ||||||||| ||||||||| ||||||||||| |||||    
T  23796227 tttgtgaggtgatgattgcccccacttataa----acacattgttagaccatcttttatccgatgttggact 23796294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 345
Target Start/End: Complemental strand, 29469880 - 29469813
Alignment:
Q  274 ttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    ||||||||| |||||||||||||||||    ||||||||||||||| |||| || | |||||||| ||||||    
T  29469880 ttgtaaggtgaggattgcccccactta----taaacacattgtcaggccatgtcctgtccgatgtgggactc 29469813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 40898750 - 40898788
Alignment:
Q  265 aaaattggtttgtaaggtaaggattgcccccacttataa 303  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  40898750 aaaatcggtttgtaaggtgaggattgcccccacttataa 40898788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 325
Target Start/End: Original strand, 48243058 - 48243152
Alignment:
Q  227 gttcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatc 325  Q
    ||||||| |||||| | ||||| || ||| |||| || ||||  || |||| |||| |||||||||||||||||    |||||||||||||||||||||    
T  48243058 gttcttacaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccactta----taaacacattgtcagaccatc 48243152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 345
Target Start/End: Original strand, 2404228 - 2404285
Alignment:
Q  284 aggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    ||||||||||||||||||||    |||||||||||| ||||||| || ||||||| ||||||    
T  2404228 aggattgcccccacttataa----acacattgtcagtccatctcctaaccgatgtgggactc 2404285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 345
Target Start/End: Original strand, 3038138 - 3038195
Alignment:
Q  284 aggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    ||||||||||||||||||||    ||||||||| |||| ||||||||| |||||| ||||||    
T  3038138 aggattgcccccacttataa----acacattgttagacaatctcttattcgatgtgggactc 3038195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 31257032 - 31257104
Alignment:
Q  231 ttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataa 303  Q
    |||||||||| | ||| |||| ||| |||| || |||| |||||||| |||| | ||||||||||||||||||    
T  31257032 ttagaaatcgtggttgagtctaacacaaccccacaaaactggtttgtgaggtgaagattgcccccacttataa 31257104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 33996150 - 33996190
Alignment:
Q  305 taaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    ||||||||||||||||| || ||||||||||||| ||||||    
T  33996150 taaacacattgtcagacaatgtcttatccgatgtgggactc 33996190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 345
Target Start/End: Original strand, 44874348 - 44874457
Alignment:
Q  232 tagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttat 331  Q
    ||||||||| | ||||| || ||| ||||  | ||||| ||||||| |||| |||||| ||||||||||    |||||||||||||||   ||||| |||    
T  44874348 tagaaatcgtggttgggcctaacacaaccatacaaaatcggtttgtgaggtgaggatttcccccactta----taaacacattgtcaggttatctcctat 44874443  T
Q  332 ccgatgtaggactc 345  Q
    ||||||| ||||||    
T  44874444 ccgatgtgggactc 44874457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 338
Target Start/End: Complemental strand, 47710528 - 47710423
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||| | | ||||| || ||| |||| || |||| ||| |||| |||| |||||||||||||||||    |||||||||||| || ||||| |     
T  47710528 tcttagaaatggtggttgggcctaacacaaccccacaaaactggcttgtgaggtgaggattgcccccactta----taaacacattgtaaggccatcacc 47710433  T
Q  329 tatccgatgt 338  Q
    ||||||||||    
T  47710432 tatccgatgt 47710423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 338
Target Start/End: Complemental strand, 47722184 - 47722079
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||| | | ||||| || ||| |||| || |||| ||| |||| |||| |||||||||||||||||    |||||||||||| || ||||| |     
T  47722184 tcttagaaatggtggttgggcctaacacaaccccacaaaactggcttgtgaggtgaggattgcccccactta----taaacacattgtaaggccatcacc 47722089  T
Q  329 tatccgatgt 338  Q
    ||||||||||    
T  47722088 tatccgatgt 47722079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 229 - 345
Target Start/End: Complemental strand, 6054488 - 6054376
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||||| | |||||||| ||| ||||  | ||||| ||||||| |||| |||||||||||||||||||| ||    | ||||||||||||||||    
T  6054488 tcttagaaatcgtggttgggtctaacacaaccctacaaaatcggtttgtgaggtgaggattgcccccacttataaata----ccttgtcagaccatctct 6054393  T
Q  329 tatccgatgtaggactc 345  Q
    |||||||||| ||||||    
T  6054392 tatccgatgttggactc 6054376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 229 - 338
Target Start/End: Original strand, 6542942 - 6543047
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||| ||||||| | |||||||| ||| |||| || ||||  || || | |||| | ||||||||||||||||||    |||||||||||||||||||||    
T  6542942 tctttgaaatcgtggttgggtctaacacaaccccacaaaaccggcttctgaggtgatgattgcccccacttataa----acacattgtcagaccatctct 6543037  T
Q  329 tatccgatgt 338  Q
    ||||||||||    
T  6543038 tatccgatgt 6543047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 345
Target Start/End: Original strand, 4868573 - 4868688
Alignment:
Q  226 tgttcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatc 325  Q
    ||||||||||||||| | ||||| || ||| |||| || ||||  || |||| |||| |||||||||||||||||    ||||||||||||||| ||||     
T  4868573 tgttcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccactta----taaacacattgtcaggccatg 4868668  T
Q  326 tcttatccgatgtaggactc 345  Q
    || | |||||||| ||||||    
T  4868669 tcctgtccgatgtgggactc 4868688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 349
Target Start/End: Original strand, 12330180 - 12330294
Alignment:
Q  231 ttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctctta 330  Q
    |||||||||| | ||||| || ||| ||||||| ||||  || |||| |||| ||| |||||||||||||    |||||||||||||||||||| || ||    
T  12330180 ttagaaatcgtggttgggcctaacacaacctcacaaaaccggcttgtgaggtgagggttgcccccactta----taaacacattgtcagaccatgtccta 12330275  T
Q  331 tccgatgtaggactcatta 349  Q
    |||||| | ||||| ||||    
T  12330276 tccgatctgggacttatta 12330294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 345
Target Start/End: Complemental strand, 9705339 - 9705227
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||||| | |||||||| ||| |||| || ||||  || |||| |||| |||||||||||||||||    |||||||||||| |  |||| ||     
T  9705339 tcttagaaatcgtggttgggtctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccactta----taaacacattgttaagccatgtcc 9705244  T
Q  329 tatccgatgtaggactc 345  Q
    |||||||||| ||||||    
T  9705243 tatccgatgtgggactc 9705227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 345
Target Start/End: Complemental strand, 13353286 - 13353174
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||| | | ||||| || ||| |||| || ||||  || ||||||||| |||||||||||||||||    ||||||||||||||| |||| ||     
T  13353286 tcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaaggtgaggattgcccccactta----taaacacattgtcaggccatgtcc 13353191  T
Q  329 tatccgatgtaggactc 345  Q
    | |||||||| ||||||    
T  13353190 tgtccgatgtgggactc 13353174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 345
Target Start/End: Complemental strand, 33796411 - 33796299
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||| | | ||||| || ||| |||| || ||||  || ||||||||| |||||||||||||||||    ||||||||||||||| |||| ||     
T  33796411 tcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaaggtgaggattgcccccactta----taaacacattgtcaggccatgtcc 33796316  T
Q  329 tatccgatgtaggactc 345  Q
    | |||||||| ||||||    
T  33796315 tgtccgatgtgggactc 33796299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 345
Target Start/End: Complemental strand, 3680274 - 3680219
Alignment:
Q  286 gattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    ||||||||||||||||||    |||||||||||||||||| | |||||||||| ||||||    
T  3680274 gattgcccccacttataa----acacattgtcagaccatcacatatccgatgtgggactc 3680219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 345
Target Start/End: Original strand, 12199861 - 12199916
Alignment:
Q  286 gattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    ||||||||||||||||||    ||| ||||||||||||| ||||||||||||| ||||||    
T  12199861 gattgcccccacttataa----acatattgtcagaccatatcttatccgatgtgggactc 12199916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 344
Target Start/End: Complemental strand, 19648351 - 19648313
Alignment:
Q  306 aaacacattgtcagaccatctcttatccgatgtaggact 344  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  19648351 aaacacattgtcagaccatctcatatccgatgtgggact 19648313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 345
Target Start/End: Complemental strand, 31961218 - 31961151
Alignment:
Q  274 ttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    |||| ||||||||||||||||||||||    ||||||||||||||| ||||| | |||| ||||| ||||||    
T  31961218 ttgtgaggtaaggattgcccccactta----taaacacattgtcaggccatcacatatctgatgtgggactc 31961151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 353
Target Start/End: Original strand, 466294 - 466368
Alignment:
Q  277 taaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactcattaacac 353  Q
    |||||| |||| ||||||| ||||||  ||||||||||||||| |||| ||| |||| |||| |||||| |||||||    
T  466294 taaggtgaggactgcccccgcttata--taaacacattgtcaggccatatctcatccaatgtgggactctttaacac 466368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 345
Target Start/End: Original strand, 12329949 - 12330055
Alignment:
Q  235 aaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccg 334  Q
    |||||| | ||||| || ||| ||||||| |||||  | |||| |||| |||||||||||||||||    |||||||||||| | | ||| |||||||||    
T  12329949 aaatcgtggttgggcctaacacaacctcacaaaatcagcttgtgaggtgaggattgcccccactta----taaacacattgttatatcatatcttatccg 12330044  T
Q  335 atgtaggactc 345  Q
    |||| ||||||    
T  12330045 atgtgggactc 12330055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 345
Target Start/End: Original strand, 12330292 - 12330401
Alignment:
Q  231 ttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctctta 330  Q
    |||||||||| | ||||| || ||| ||||||| ||||  || |||| || | ||||||||||| ||||||||    ||||||||||||||||| || ||    
T  12330292 ttagaaatcgtggttgggcctaacacaacctcacaaaaccggcttgtgagatgaggattgcccc-acttataa----acacattgtcagaccatgtccta 12330386  T
Q  331 tccgatgtaggactc 345  Q
    |||||||| ||||||    
T  12330387 tccgatgtgggactc 12330401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 338
Target Start/End: Complemental strand, 12885301 - 12885273
Alignment:
Q  310 acattgtcagaccatctcttatccgatgt 338  Q
    |||||||||||||||||||||||||||||    
T  12885301 acattgtcagaccatctcttatccgatgt 12885273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 345
Target Start/End: Original strand, 25065092 - 25065205
Alignment:
Q  228 ttcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctc 327  Q
    |||||||||||||   ||||| || ||| |||| || ||||  || |||| |||| ||||||||||| ||||||||    ||| ||||||||||||| ||    
T  25065092 ttcttagaaatcgtagttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccctacttataa----acatattgtcagaccatgtc 25065187  T
Q  328 ttatccgatgtaggactc 345  Q
     |||||||||| ||||||    
T  25065188 ctatccgatgtgggactc 25065205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 1564621 - 1564685
Alignment:
Q  284 aggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactcattaaca 352  Q
    |||||||||||||||||||||    |||||||||||||||||||||||||||||| |||||| ||||||    
T  1564621 aggattgcccccacttataat----cacattgtcagaccatctcttatccgatgtgggactctttaaca 1564685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 229 - 346
Target Start/End: Complemental strand, 15480407 - 15480294
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||||| | ||||| || ||| |||| || ||||   | |||| |||| ||||||||||||||||||||    |||||||||||||||||| |     
T  15480407 tcttagaaatcgtggttgggcctaacagaaccccacaaaaccagcttgtgaggtgaggattgcccccacttataa----acacattgtcagaccatcacc 15480312  T
Q  329 tatccgatgtaggactca 346  Q
    |||||||||| |||||||    
T  15480311 tatccgatgtgggactca 15480294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 338
Target Start/End: Complemental strand, 15438926 - 15438857
Alignment:
Q  265 aaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgt 338  Q
    ||||| || |||| |||| ||||||||||||||||||||    ||||||| |||||||||||| ||||||||||    
T  15438926 aaaatcggcttgtgaggtgaggattgcccccacttataa----acacattatcagaccatctcatatccgatgt 15438857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 338
Target Start/End: Original strand, 17150268 - 17150337
Alignment:
Q  265 aaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgt 338  Q
    |||| ||||| || |||| ||||||||||||||||||||    ||||||| |||||||||||| ||||||||||    
T  17150268 aaaactggttggtgaggtgaggattgcccccacttataa----acacattttcagaccatctcctatccgatgt 17150337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 338
Target Start/End: Original strand, 18333509 - 18333569
Alignment:
Q  274 ttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgt 338  Q
    |||| |||| |||||| |||||||||||||    |||||||||||||||||||| ||||||||||    
T  18333509 ttgtgaggtgaggattacccccacttataa----acacattgtcagaccatctcctatccgatgt 18333569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 345
Target Start/End: Original strand, 41666756 - 41666868
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||||| | ||||| || ||| |||| || ||||  || |||| |||| |||||||||||||||||    ||||||||||||||| |||| ||     
T  41666756 tcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccactta----taaacacattgtcaggccatgtcc 41666851  T
Q  329 tatccgatgtaggactc 345  Q
    | |||||||| ||||||    
T  41666852 tgtccgatgtgggactc 41666868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 345
Target Start/End: Original strand, 41666992 - 41667104
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||||| | ||||| || ||| |||| || ||||  || |||| |||| |||||||||||||||||    ||||||||||||||| |||| ||     
T  41666992 tcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccactta----taaacacattgtcaggccatgtcc 41667087  T
Q  329 tatccgatgtaggactc 345  Q
    | |||||||| ||||||    
T  41667088 tgtccgatgtgggactc 41667104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 60172 - 60098
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataa 303  Q
    |||||||||| | | |||||||| |||||||| || ||||  || |||| |||| ||||||||||||||||||||    
T  60172 tcttagaaattgtgattgggtctaacataaccccacaaaaccggcttgtgaggtgaggattgcccccacttataa 60098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 345
Target Start/End: Original strand, 2063787 - 2063844
Alignment:
Q  284 aggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    ||||||||||||||||||||    ||||||||||||||||| |  |||||||||| ||||||    
T  2063787 aggattgcccccacttataa----acacattgtcagaccatgttctatccgatgtgggactc 2063844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 338
Target Start/End: Complemental strand, 13296757 - 13296653
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||||| | ||||| || ||| |||| || |||| ||| |||| |||| |||||||||||||||||||| |||    ||||||| |||| ||||    
T  13296757 tcttagaaatcgtggttgggcctaacacaacc-cacaaaactggcttgtgaggtgaggattgcccccacttataaataa----attgtcaaaccaactct 13296663  T
Q  329 tatccgatgt 338  Q
    || |||||||    
T  13296662 taaccgatgt 13296653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 338
Target Start/End: Original strand, 20510641 - 20510746
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||||| | ||||| || ||| |||  || |||| |||||| | |||| |||||||||||||||||    |||||| |||||||| ||||| |     
T  20510641 tcttagaaatcgtgtttgggcctaacacaactccacaaaactggtttttgaggtgaggattgcccccactta----taaacatattgtcaggccatcacc 20510736  T
Q  329 tatccgatgt 338  Q
    ||||||||||    
T  20510737 tatccgatgt 20510746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 344
Target Start/End: Original strand, 422218 - 422327
Alignment:
Q  231 ttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctctta 330  Q
    |||||||||| | || || || |||||||| || |||| ||| |||| |||| ||||||||| ||||||    |||||||||||||||||||||||| ||    
T  422218 ttagaaatcgtggtttggcctaacataaccccacaaaactggcttgtgaggtgaggattgcctccactt----ttaaacacattgtcagaccatctccta 422313  T
Q  331 tccgatgtaggact 344  Q
    |||||||| |||||    
T  422314 tccgatgtgggact 422327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 274 - 353
Target Start/End: Original strand, 29907770 - 29907845
Alignment:
Q  274 ttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactcattaacac 353  Q
    |||| |||| ||||||| ||||||||||||    |||||||||||||| |||||||||||||||| |||||| |||||||    
T  29907770 ttgtgaggtgaggattgaccccacttataa----acacattgtcagactatctcttatccgatgtgggactctttaacac 29907845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 352
Target Start/End: Original strand, 34236692 - 34236766
Alignment:
Q  274 ttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactcattaaca 352  Q
    |||| |||| |||||||| |||||||||||    ||||||||||||||||||||||||||||||| | |||| ||||||    
T  34236692 ttgtgaggtgaggattgctcccacttataa----acacattgtcagaccatctcttatccgatgtggcactctttaaca 34236766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 345
Target Start/End: Original strand, 11232428 - 11232540
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||| | | ||||| || ||| |||| || ||||  || ||||||||| |||||||||||||||||    |||||||||||||||||||| ||     
T  11232428 tcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaaggtgaggattgcccccactta----taaacacattgtcagaccatgtcc 11232523  T
Q  329 tatccgatgtaggactc 345  Q
    | |||||||| ||||||    
T  11232524 tgtccgatgtgggactc 11232540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 345
Target Start/End: Original strand, 5590369 - 5590479
Alignment:
Q  231 ttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctctta 330  Q
    |||||||| | | ||||| || ||| ||||||| ||||  || |||| | || ||||||||||||||||     ||||||||||||||||||||||| ||    
T  5590369 ttagaaattgtggttgggcctaacacaacctcacaaaaccggcttgtgaagtgaggattgcccccactt----gtaaacacattgtcagaccatctccta 5590464  T
Q  331 tccgatgtaggactc 345  Q
    |||||||| ||||||    
T  5590465 tccgatgtgggactc 5590479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 352
Target Start/End: Original strand, 38447471 - 38447545
Alignment:
Q  274 ttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactcattaaca 352  Q
    |||| |||| ||||||||||||||||||||    |||||||||||| |||||||||||||| ||| ||| || ||||||    
T  38447471 ttgtgaggtgaggattgcccccacttataa----acacattgtcaggccatctcttatccgttgtgggattctttaaca 38447545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 345
Target Start/End: Original strand, 15042668 - 15042781
Alignment:
Q  228 ttcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctc 327  Q
    ||||||||||||| | ||| | || ||| |||| || ||||| ||||||  |||| | ||||||||||||||||||    |||||||||||| |||| ||    
T  15042668 ttcttagaaatcgtggttgagcctaacacaaccccacaaaatcggtttgcgaggtgatgattgcccccacttataa----acacattgtcaggccatgtc 15042763  T
Q  328 ttatccgatgtaggactc 345  Q
     |||||||||| ||||||    
T  15042764 gtatccgatgtgggactc 15042781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 338
Target Start/End: Complemental strand, 20301346 - 20301241
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||||| | ||||| || ||| ||||||| ||||  || |||| |||| |||||||||||||||||    ||||||||||||||  |||||||     
T  20301346 tcttagaaatcgtggttgggcctaacacaacctcacaaaacgggcttgtgaggttaggattgcccccactta----taaacacattgtcaagccatctca 20301251  T
Q  329 tatccgatgt 338  Q
    ||||| ||||    
T  20301250 tatccaatgt 20301241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 338
Target Start/End: Complemental strand, 21087978 - 21087873
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||||| | ||||| || ||| ||||||| ||||  || |||| |||| |||||||||||||||||    ||||||||||||||  |||||||     
T  21087978 tcttagaaatcgtggttgggcctaacacaacctcacaaaacgggcttgtgaggttaggattgcccccactta----taaacacattgtcaagccatctca 21087883  T
Q  329 tatccgatgt 338  Q
    ||||| ||||    
T  21087882 tatccaatgt 21087873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 5940071 - 5940024
Alignment:
Q  305 taaacacattgtcagaccatctcttatccgatgtaggactcattaaca 352  Q
    |||||||||||||| ||||||||| ||||||||| |||||| ||||||    
T  5940071 taaacacattgtcaaaccatctctcatccgatgtgggactctttaaca 5940024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 345
Target Start/End: Original strand, 11232193 - 11232305
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||| | | ||||| || ||| |||| || ||||  || ||||||||| |||||||||||||||||    ||||||||||||||| |||| ||     
T  11232193 tcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaaggtgaggattgcccccactta----taaacacattgtcaggccatgtcc 11232288  T
Q  329 tatccgatgtaggactc 345  Q
    | |||||||| ||||||    
T  11232289 tgtccgatgtgggactc 11232305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 345
Target Start/End: Original strand, 24532420 - 24532532
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||||  | ||||| || ||| |||| || ||||  || |||| |||| | ||||||||||||||||||    |||||||||||| |||||||     
T  24532420 tcttagaaatcatggttgggcctaacacaaccccacaaaaccggcttgtgaggtgatgattgcccccacttataa----acacattgtcaggccatctcc 24532515  T
Q  329 tatccgatgtaggactc 345  Q
    |||||||||| ||||||    
T  24532516 tatccgatgtgggactc 24532532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 28213392 - 28213439
Alignment:
Q  305 taaacacattgtcagaccatctcttatccgatgtaggactcattaaca 352  Q
    |||| |||||||||||| ||||||||||||||||| ||||| ||||||    
T  28213392 taaatacattgtcagactatctcttatccgatgtaagactctttaaca 28213439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 345
Target Start/End: Original strand, 39052928 - 39053040
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    ||||||||||||   ||||| || ||| |||| || ||||  || |||| |||| ||||||||||||||||||||    |||||||||||| ||||| |     
T  39052928 tcttagaaatcgttgttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataa----acacattgtcaggccatcacc 39053023  T
Q  329 tatccgatgtaggactc 345  Q
    |||||||||| ||||||    
T  39053024 tatccgatgtgggactc 39053040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 345
Target Start/End: Original strand, 4873534 - 4873568
Alignment:
Q  311 cattgtcagaccatctcttatccgatgtaggactc 345  Q
    |||||||||||||||||||||||||||| ||||||    
T  4873534 cattgtcagaccatctcttatccgatgtgggactc 4873568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 6559472 - 6559522
Alignment:
Q  253 acataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataa 303  Q
    ||||||||||| ||||  || ||||||||| ||||||||||||||||||||    
T  6559472 acataacctcacaaaaccggcttgtaaggtgaggattgcccccacttataa 6559522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 353
Target Start/End: Complemental strand, 7729981 - 7729906
Alignment:
Q  274 ttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactcattaacac 353  Q
    |||| |||| |||||||||||||||||    ||||||||| ||||| ||||||| |||| ||||| |||||| |||||||    
T  7729981 ttgtgaggtgaggattgcccccactta----taaacacatggtcaggccatctcatatctgatgtgggactctttaacac 7729906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 345
Target Start/End: Complemental strand, 12317081 - 12317019
Alignment:
Q  279 aggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    |||| ||||||||||||||||||||    ||||||||||||||||| || | |||||||| ||||||    
T  12317081 aggtgaggattgcccccacttataa----acacattgtcagaccatgtcctgtccgatgtgggactc 12317019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 345
Target Start/End: Original strand, 28069358 - 28069468
Alignment:
Q  231 ttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctctta 330  Q
    |||||||||| | |||| ||| ||| |||  || |||||  |||||| |||| |||||||||||||||||    |||| |||||||||| |||| || ||    
T  28069358 ttagaaatcgtggttggatctaacacaactccacaaaatcagtttgtgaggtgaggattgcccccactta----taaatacattgtcaggccatgtcata 28069453  T
Q  331 tccgatgtaggactc 345  Q
    |||||||| ||||||    
T  28069454 tccgatgtgggactc 28069468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 36907501 - 36907546
Alignment:
Q  307 aacacattgtcagaccatctcttatccgatgtaggactcattaaca 352  Q
    |||||||||||||||||||||||||| || || |||||| ||||||    
T  36907501 aacacattgtcagaccatctcttatctgacgtgggactctttaaca 36907546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 5675805 - 5675845
Alignment:
Q  305 taaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    |||||||||||||||||||||   |||||||||||||||||    
T  5675805 taaacacattgtcagaccatcatctatccgatgtaggactc 5675845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 8716128 - 8716096
Alignment:
Q  304 ttaaacacattgtcagaccatctcttatccgat 336  Q
    ||||||||||||| |||||||||||||||||||    
T  8716128 ttaaacacattgtgagaccatctcttatccgat 8716096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 345
Target Start/End: Complemental strand, 31197628 - 31197588
Alignment:
Q  305 taaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    ||||||||||||||||||||| | |||| ||||||||||||    
T  31197628 taaacacattgtcagaccatcacctatctgatgtaggactc 31197588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0766 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 345
Target Start/End: Complemental strand, 6355 - 6247
Alignment:
Q  233 agaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatc 332  Q
    |||||||| | ||||| || ||| |||| || ||||| || |||| |||| ||||||||||||||||||||    |||||||||||||| ||||||||||    
T  6355 agaaatcgtggttgggcctaacacaaccccacaaaatcggcttgtgaggtgaggattgcccccacttataa----acacattgtcagactatctcttatc 6260  T
Q  333 cgatgtaggactc 345  Q
     ||||| ||||||    
T  6259 tgatgtgggactc 6247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 344
Target Start/End: Complemental strand, 46794067 - 46794028
Alignment:
Q  305 taaacacattgtcagaccatctcttatccgatgtaggact 344  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46794067 taaacacattgtcagaccatctcttatccgatgtaggact 46794028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 344
Target Start/End: Original strand, 45138970 - 45139081
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||||| | |||||||||||| |||| || ||||  || |||| |||| |||||||||||||||||    | ||||| ||||||| ||||||||    
T  45138970 tcttagaaatcgtggttgggtcttacacaaccccacaaaaccggcttgtgaggtgaggattgcccccactta----ttaacacgttgtcaggccatctct 45139065  T
Q  329 tatccgatgtaggact 344  Q
    |||| ||||| |||||    
T  45139066 tatcagatgtgggact 45139081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 45138805 - 45138911
Alignment:
Q  233 agaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatc 332  Q
    |||||||| | |||||||| | | |||| || ||||  || |||| |||| ||||||||||||||||||||    |||||||| ||||||||||||||||    
T  45138805 agaaatcgtggttgggtctcatacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataa----acacattgccagaccatctcttatc 45138900  T
Q  333 cgatgtaggac 343  Q
    |||||| ||||    
T  45138901 cgatgtgggac 45138911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 1800285 - 1800201
Alignment:
Q  244 ttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatc 332  Q
    |||||||||||| |||| || ||||  ||||||| |||| |||||||||||||||||    |||| ||| |||||||||||||||||||    
T  1800285 ttgggtcttacacaaccccacaaaaccggtttgtgaggtgaggattgcccccactta----taaatacactgtcagaccatctcttatc 1800201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 345
Target Start/End: Complemental strand, 22729185 - 22729073
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||| | | ||||| || ||| ||||||| ||||  || |||| | || ||||||||||||||||     |||||||||||||||||||||||     
T  22729185 tcttagaaattgtggttgggcctaacacaacctcacaaaaccggcttgtgaagtgaggattgcccccactt----gtaaacacattgtcagaccatctcc 22729090  T
Q  329 tatccgatgtaggactc 345  Q
    |||||||||| ||||||    
T  22729089 tatccgatgtgggactc 22729073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 345
Target Start/End: Original strand, 35038192 - 35038305
Alignment:
Q  228 ttcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctc 327  Q
    ||||||||||||| | ||||| || ||| |||| || ||||  || |||| |||| |||||| |||||||||||||    |||||||||||| ||||| |    
T  35038192 ttcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggatttcccccacttataa----acacattgtcaggccatcac 35038287  T
Q  328 ttatccgatgtaggactc 345  Q
     |||||||||| ||||||    
T  35038288 ctatccgatgtgggactc 35038305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 354
Target Start/End: Complemental strand, 54368601 - 54368481
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||||| | |||||||| ||| |||| || ||||  || |||| |||| |||||||||||||||||    |||||||||| |||| ||||||      
T  54368601 tcttagaaatcgtggttgggtctaacacaaccccataaaaccggcttgtgaggtgaggattgcccccactta----taaacacattttcaggccatcttc 54368506  T
Q  329 tatccgatgtaggactcattaacact 354  Q
    |||| ||||| |||||| ||||||||    
T  54368505 tatcggatgtgggactc-ttaacact 54368481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 345
Target Start/End: Complemental strand, 54567977 - 54567865
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||||| | ||||| || ||| |||| || ||||  || |||| |||| |||||| |||||||||||||    |||||||||||| |||| ||     
T  54567977 tcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggatttcccccacttataa----acacattgtcaggccatgtcc 54567882  T
Q  329 tatccgatgtaggactc 345  Q
    |||||||| ||||||||    
T  54567881 tatccgatataggactc 54567865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 345
Target Start/End: Original strand, 35038472 - 35038539
Alignment:
Q  274 ttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    |||| |||| ||||||||||||||||||||    |||||||||||| ||||| | |||||||||| ||||||    
T  35038472 ttgtcaggtgaggattgcccccacttataa----acacattgtcaggccatcacctatccgatgtgggactc 35038539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 303
Target Start/End: Complemental strand, 21387395 - 21387366
Alignment:
Q  274 ttgtaaggtaaggattgcccccacttataa 303  Q
    ||||||||||||||||||||||||||||||    
T  21387395 ttgtaaggtaaggattgcccccacttataa 21387366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 352
Target Start/End: Original strand, 30179752 - 30179826
Alignment:
Q  274 ttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactcattaaca 352  Q
    |||| |||| |||||| |||||||||||||    ||||||||||||  ||||||||||| ||||| |||||| ||||||    
T  30179752 ttgtgaggtgaggattacccccacttataa----acacattgtcaggtcatctcttatctgatgtgggactctttaaca 30179826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 345
Target Start/End: Complemental strand, 34992576 - 34992523
Alignment:
Q  288 ttgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    |||||||||||||    ||||||||||||||||||||| | |||||||||| ||||||    
T  34992576 ttgcccccactta----taaacacattgtcagaccatcacctatccgatgtgggactc 34992523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 38791521 - 38791561
Alignment:
Q  305 taaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    |||| |||||||||||||||||| |||||||||| ||||||    
T  38791521 taaatacattgtcagaccatctcctatccgatgtgggactc 38791561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 10523265 - 10523218
Alignment:
Q  306 aaacacattgtcagaccatctcttatccgatgtaggactcattaacac 353  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||    
T  10523265 aaacacattgtcagaccatctcttatccgatgtgggactctttaacac 10523218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 345
Target Start/End: Complemental strand, 16419587 - 16419475
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||||| | ||||| || ||| |||| || ||||  || |||| |||| ||||||||||||||||||||    ||||||||||||||||| ||     
T  16419587 tcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataa----acacattgtcagaccatgtcc 16419492  T
Q  329 tatccgatgtaggactc 345  Q
    |||||||||| ||||||    
T  16419491 tatccgatgtgggactc 16419475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 345
Target Start/End: Original strand, 5711437 - 5711550
Alignment:
Q  228 ttcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctc 327  Q
    ||||||||||||| | ||||| || ||| |||| || ||||  || |||| |||| |||||||||||||||||    ||||||||||||||| |||| ||    
T  5711437 ttcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgttaggtgaggattgcccccactta----taaacacattgtcaggccatttc 5711532  T
Q  328 ttatccgatgtaggactc 345  Q
     | |||||||| ||||||    
T  5711533 ctttccgatgtgggactc 5711550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 345
Target Start/End: Original strand, 40379208 - 40379320
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||||| | ||||| || ||| |||| || ||||  || |||| |||| |||||||||||||||||    |||||||| |||||| ||||| |     
T  40379208 tcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccactta----taaacacactgtcaggccatcacc 40379303  T
Q  329 tatccgatgtaggactc 345  Q
    |||||||||| ||||||    
T  40379304 tatccgatgtgggactc 40379320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 345
Target Start/End: Original strand, 40379443 - 40379555
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||||| | ||||| || ||| |||| || ||||  || |||| |||| |||||||||||||||||    |||||||| |||||| ||||| |     
T  40379443 tcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccactta----taaacacactgtcaggccatcacc 40379538  T
Q  329 tatccgatgtaggactc 345  Q
    |||||||||| ||||||    
T  40379539 tatccgatgtgggactc 40379555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 789444 - 789495
Alignment:
Q  285 ggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgt 338  Q
    ||||||| ||||||||||  ||||||||||||||| |||| |||||||||||||    
T  789444 ggattgctcccacttata--taaacacattgtcaggccatttcttatccgatgt 789495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 14927137 - 14927082
Alignment:
Q  279 aggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgt 338  Q
    |||| ||||||||||||||||||||    ||||||||||||  |||||||||||||||||    
T  14927137 aggtgaggattgcccccacttataa----acacattgtcaggtcatctcttatccgatgt 14927082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 345
Target Start/End: Complemental strand, 16533615 - 16533520
Alignment:
Q  246 gggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    |||||| ||| ||||||| ||||  || |||| | || ||||||||||||||||||||    |||||||||||| ||||| | |||||| ||||||||||    
T  16533615 gggtctaacacaacctcacaaaaccggcttgtgaagtgaggattgcccccacttataa----acacattgtcaggccatcacctatccggtgtaggactc 16533520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 345
Target Start/End: Original strand, 17525382 - 17525449
Alignment:
Q  274 ttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    |||| |||| ||||||||||||||||||||    ||||||||||||||||| || | |||||||| ||||||    
T  17525382 ttgtgaggtgaggattgcccccacttataa----acacattgtcagaccatgtcatgtccgatgtgggactc 17525449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 345
Target Start/End: Complemental strand, 17719440 - 17719373
Alignment:
Q  274 ttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    |||| |||| ||||||||||||||||||||    |||||||||||| ||||| | |||||||||| ||||||    
T  17719440 ttgtgaggtgaggattgcccccacttataa----acacattgtcaggccatcacctatccgatgtgggactc 17719373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 17719651 - 17719577
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataa 303  Q
    |||||||||||| | ||||| || ||| |||| || ||||  ||||||| |||| ||||||||||||||||||||    
T  17719651 tcttagaaatcgtggttgggcctaacacaaccccacaaaaccggtttgtgaggtcaggattgcccccacttataa 17719577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 332
Target Start/End: Original strand, 25082536 - 25082635
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||||| | ||||  || ||| |||| || |||| ||| |||| |||| | ||||||||| ||||||||    |||||||||||||||||||||    
T  25082536 tcttagaaatcgtggttggacctaacacaaccccacaaaactggcttgtgaggtgatgattgcccctacttataa----acacattgtcagaccatctct 25082631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 345
Target Start/End: Original strand, 37812542 - 37812609
Alignment:
Q  274 ttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    |||| |||| ||||||||||||||||||||    ||||||||||||  ||| ||||||||||||| ||||||    
T  37812542 ttgtgaggtgaggattgcccccacttataa----acacattgtcaggtcatgtcttatccgatgtgggactc 37812609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 345
Target Start/End: Original strand, 33606095 - 33606165
Alignment:
Q  271 ggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    ||||||| |||| ||||||||||| |||||    |||||||||| |||| ||||||| |||||||||| ||||||    
T  33606095 ggtttgtgaggtgaggattgcccctactta----taaacacattttcaggccatctcctatccgatgtgggactc 33606165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 345
Target Start/End: Original strand, 36351923 - 36352037
Alignment:
Q  228 ttcttagaaatcgagcttgggtcttacataacctca-aaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatct 326  Q
    ||||||||||||| | ||||| || |||||||| || ||||||| | |||| |||| || |||| ||||||||||||    ||||||||||||  | |||    
T  36351923 ttcttagaaatcgtggttgggcctaacataaccccacaaaaatttgcttgtgaggtgagaattgtccccacttataa----acacattgtcaggtcgtct 36352018  T
Q  327 cttatccgatgtaggactc 345  Q
    | ||||||||||| |||||    
T  36352019 cctatccgatgtaagactc 36352037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 345
Target Start/End: Original strand, 15124546 - 15124659
Alignment:
Q  228 ttcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctc 327  Q
    |||||| |||||| | |||||||| ||| |||| || ||||| || || | ||||  ||||||||||||||||    |||||| ||||||||||||| |     
T  15124546 ttcttaaaaatcgtggttgggtctaacacaaccccacaaaatcggcttatgaggtggggattgcccccactta----taaacatattgtcagaccatgtt 15124641  T
Q  328 ttatccgatgtaggactc 345  Q
     |||||||||| ||||||    
T  15124642 ctatccgatgtgggactc 15124659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 327
Target Start/End: Complemental strand, 15464818 - 15464760
Alignment:
Q  265 aaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctc 327  Q
    |||| |||||||| |||| ||||||||||||||||| |||   ||||||||||||||||||||    
T  15464818 aaaactggtttgtgaggtgaggattgcccccactta-aat---acacattgtcagaccatctc 15464760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 36316052 - 36316124
Alignment:
Q  231 ttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataa 303  Q
    |||||||||| | ||||  || |||||||| || |||| ||| |||||| || ||||||||||||||||||||    
T  36316052 ttagaaatcgtggttggacctaacataaccccacaaaactggcttgtaatgtgaggattgcccccacttataa 36316124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 352
Target Start/End: Complemental strand, 17468374 - 17468310
Alignment:
Q  284 aggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactcattaaca 352  Q
    ||||||||||||||||||||    ||| ||||||||||||||||||||||||||| |||||| ||||||    
T  17468374 aggattgcccccacttataa----acatattgtcagaccatctcttatccgatgtgggactctttaaca 17468310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 345
Target Start/End: Complemental strand, 35772349 - 35772237
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||||| | ||||| || ||| |||| || ||||  || || | |||||||||||||||||||||||||    |||||||||||| |||||||     
T  35772349 tcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttctgaggtaaggattgcccccacttataa----acacattgtcaggccatctcc 35772254  T
Q  329 tatccgatgtaggactc 345  Q
    |||||||||| ||||||    
T  35772253 tatccgatgtgggactc 35772237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 345
Target Start/End: Complemental strand, 40079237 - 40079125
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||||| | ||||| || ||| |||| || ||||  || |||| |||| ||||||||||||||||||||    ||||||||||||  ||||||     
T  40079237 tcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataa----acacattgtcaggtcatctcc 40079142  T
Q  329 tatccgatgtaggactc 345  Q
    |||||||||||||||||    
T  40079141 tatccgatgtaggactc 40079125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 338
Target Start/End: Original strand, 42586437 - 42586542
Alignment:
Q  228 ttcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctc 327  Q
    ||||||||||||| | ||||| || ||| |||| || |||||||| |||| |||| ||||||||||| |||||||     |||||||||||| |||||||    
T  42586437 ttcttagaaatcgtggttgggcctaacacaaccccacaaaattggcttgtgaggtgaggattgcccc-acttatat----acacattgtcaggccatctc 42586531  T
Q  328 ttatccgatgt 338  Q
    |||||||||||    
T  42586532 ttatccgatgt 42586542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 229 - 338
Target Start/End: Original strand, 25145484 - 25145589
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||||| | |||||||| ||| ||||||| ||||  |  |||| |||| |||||||||||||||    | ||||||||||||||||||||| |     
T  25145484 tcttagaaatcgtggttgggtctaacacaacctcacaaaaccgacttgtgaggtgaggattgcccccact----aataaacacattgtcagaccatcacc 25145579  T
Q  329 tatccgatgt 338  Q
    ||||||||||    
T  25145580 tatccgatgt 25145589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 345
Target Start/End: Original strand, 2859391 - 2859503
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||| | | ||||| || ||| ||||||| | ||  || |||| ||||||||||||||||||||||    ||||||||||||||| ||||| |     
T  2859391 tcttagaaatggtggttgggcctaacacaacctcacagaaccggcttgtgaggtaaggattgcccccactta----taaacacattgtcaggccatcacc 2859486  T
Q  329 tatccgatgtaggactc 345  Q
    |||||||||| ||||||    
T  2859487 tatccgatgtgggactc 2859503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 345
Target Start/End: Original strand, 7826075 - 7826142
Alignment:
Q  274 ttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    |||| |||||||||||| ||||||||||||    ||||||||||||||||||| |||| |||||| ||||||    
T  7826075 ttgtgaggtaaggattgtccccacttataa----acacattgtcagaccatcttttattcgatgtgggactc 7826142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 345
Target Start/End: Original strand, 15986377 - 15986444
Alignment:
Q  274 ttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    |||| |||| ||||||||||||||||||||    |||||||||||| | ||||| |||||||||||||||||    
T  15986377 ttgtgaggtgaggattgcccccacttataa----acacattgtcaggctatctcctatccgatgtaggactc 15986444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 20208575 - 20208637
Alignment:
Q  279 aggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    |||| ||||||||||||||||||||    ||||||||||||||||| || |||||||||| ||||||    
T  20208575 aggtgaggattgcccccacttataa----acacattgtcagaccatgtcctatccgatgtgggactc 20208637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 355
Target Start/End: Original strand, 4098446 - 4098522
Alignment:
Q  274 ttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactcattaacactt 355  Q
    ||||||||| |||||||||||||||||    |||||||||| ||| ||||||| |||||||||||  ||||| |||||||||    
T  4098446 ttgtaaggtgaggattgcccccactta----taaacacattatcaaaccatctattatccgatgtgcgactc-ttaacactt 4098522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 345
Target Start/End: Complemental strand, 7652331 - 7652291
Alignment:
Q  305 taaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    |||||||||||||||||||||| |||||||||||| |||||    
T  7652331 taaacacattgtcagaccatcttttatccgatgtaagactc 7652291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 345
Target Start/End: Complemental strand, 3170071 - 3169973
Alignment:
Q  244 ttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggac 343  Q
    |||||||| ||| |||| || ||||  || |||| ||||||||||||||| ||||||||   ||||| |||||||||||| ||| || ||||||| ||||    
T  3170071 ttgggtctaacacaaccccacaaaaccggcttgtgaggtaaggattgccctcacttata---aaacaaattgtcagaccaactcctaaccgatgtgggac 3169975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 345
Target Start/End: Complemental strand, 25713442 - 25713366
Alignment:
Q  265 aaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    |||| ||| |||| |||| | ||||||||||||||||||    |||||||||||||||||| | |||||||||| ||||||    
T  25713442 aaaactggcttgtgaggtgacgattgcccccacttataa----acacattgtcagaccatcacctatccgatgtgggactc 25713366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 52961617 - 52961557
Alignment:
Q  279 aggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggac 343  Q
    |||| |||||||||| |||||||||    |||||||||||||||||||| |||||||||| ||||    
T  52961617 aggtgaggattgccctcacttataa----acacattgtcagaccatctcctatccgatgtgggac 52961557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 344
Target Start/End: Original strand, 4113005 - 4113116
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||||| | ||||| || ||| |||| || ||||  || |||| |||| |||||||||||||||||    ||||||||||||||| |||| ||     
T  4113005 tcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccactta----taaacacattgtcaggccatgtcc 4113100  T
Q  329 tatccgatgtaggact 344  Q
     ||||||||| |||||    
T  4113101 catccgatgtgggact 4113116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 345
Target Start/End: Original strand, 26173504 - 26173567
Alignment:
Q  278 aaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    ||||| || |||||||||||||||||    |||||||||||||||||||| |||| ||||| ||||||    
T  26173504 aaggtgagaattgcccccacttataa----acacattgtcagaccatctcatatctgatgtgggactc 26173567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 26177228 - 26177154
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataa 303  Q
    |||||||||||| | ||||| || ||| |||| || |||| |||||| | |||| ||||||||||||||||||||    
T  26177228 tcttagaaatcgtggttgggcctaacacaaccccacaaaactggtttttgaggtgaggattgcccccacttataa 26177154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 345
Target Start/End: Complemental strand, 38668400 - 38668333
Alignment:
Q  274 ttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    ||||||||| | ||||||||||||||||||    ||||||||||| |||||| | |||||||||| ||||||    
T  38668400 ttgtaaggtgatgattgcccccacttataa----acacattgtcaaaccatcacatatccgatgtgggactc 38668333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 345
Target Start/End: Original strand, 39348115 - 39348230
Alignment:
Q  226 tgttcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatc 325  Q
    ||||||||||||||| | |||||||| ||| |||| || | ||  || | ||||| | ||||||||| ||||||||||    |||||||||||| | |||    
T  39348115 tgttcttagaaatcgtggttgggtctaacacaaccccacagaaccggctggtaagttgaggattgcctccacttataa----acacattgtcaggctatc 39348210  T
Q  326 tcttatccgatgtaggactc 345  Q
    || |||||||||| ||||||    
T  39348211 tcctatccgatgtgggactc 39348230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 42819313 - 42819283
Alignment:
Q  305 taaacacattgtcagaccatctcttatccga 335  Q
    |||||||||||||||||||||||||||||||    
T  42819313 taaacacattgtcagaccatctcttatccga 42819283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 345
Target Start/End: Original strand, 52650815 - 52650882
Alignment:
Q  274 ttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    |||| |||| ||||||||||||||||||||    |||||||||| | ||||||| |||||||||| ||||||    
T  52650815 ttgtgaggtgaggattgcccccacttataa----acacattgtccggccatctcctatccgatgtgggactc 52650882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 338
Target Start/End: Complemental strand, 33156982 - 33156949
Alignment:
Q  305 taaacacattgtcagaccatctcttatccgatgt 338  Q
    ||||||||||||||||||||||| ||||||||||    
T  33156982 taaacacattgtcagaccatctcctatccgatgt 33156949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 344
Target Start/End: Original strand, 17452680 - 17452789
Alignment:
Q  231 ttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctctta 330  Q
    |||||||||| | ||||| || ||| |||| || ||||  || |||| |||| |||||||||||||||||    |||| |||||||||| |||| |||||    
T  17452680 ttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccactta----taaatacattgtcaggccatgtctta 17452775  T
Q  331 tccgatgtaggact 344  Q
    || ||||| |||||    
T  17452776 tctgatgtgggact 17452789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 26765951 - 26766022
Alignment:
Q  99 actttttaagaatttttaatttaaaaactattcactgcaaaagtttaatacttcaattttttatagattgaat 171  Q
    |||||||||  |||||||||  |||||||||||| || |||||||||||| |||||||| | || ||||||||    
T  26765951 actttttaaagatttttaata-aaaaactattcattgaaaaagtttaatatttcaatttctgatggattgaat 26766022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 345
Target Start/End: Original strand, 31254448 - 31254518
Alignment:
Q  271 ggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    |||||||||||| |||||||||||||||||    ||||||||||||||| ||||| | |||||||||| ||||||    
T  31254448 ggtttgtaaggtgaggattgcccccactta----taaacacattgtcaggccatcacctatccgatgtgggactc 31254518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 352
Target Start/End: Original strand, 44118903 - 44118977
Alignment:
Q  274 ttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactcattaaca 352  Q
    |||| |||| |||||| |||||||||||||    |||||||||||| |||||||||||||||||| |||||| ||||||    
T  44118903 ttgtgaggtgaggattacccccacttataa----acacattgtcaggccatctcttatccgatgtgggactctttaaca 44118977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 353
Target Start/End: Complemental strand, 44249126 - 44249078
Alignment:
Q  305 taaacacattgtcagaccatctcttatccgatgtaggactcattaacac 353  Q
    |||||||||||||||||||||| |||||||||||||||||  |||||||    
T  44249126 taaacacattgtcagaccatcttttatccgatgtaggactatttaacac 44249078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 345
Target Start/End: Original strand, 27634116 - 27634192
Alignment:
Q  265 aaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    ||||| ||||||| |||| |||||||||||||||||    ||||||||||||||| |||| || |||||||||| ||||||    
T  27634116 aaaatcggtttgtgaggtgaggattgcccccactta----taaacacattgtcaggccatgtcctatccgatgtgggactc 27634192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 345
Target Start/End: Original strand, 35645798 - 35645876
Alignment:
Q  263 aaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    |||||| ||| |||| |||| |||||||||||||||||    ||||||||||||||||||||| | ||| |||||| ||||||    
T  35645798 aaaaaactggcttgtgaggtgaggattgcccccactta----taaacacattgtcagaccatcacctattcgatgtgggactc 35645876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 53559287 - 53559359
Alignment:
Q  227 gttcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccactt 299  Q
    |||||||||||||| | ||||| || ||| |||| || ||||| || ||||||||| ||||||||||||||||    
T  53559287 gttcttagaaatcgtggttgggcctaacacaaccccacaaaatcggcttgtaaggtgaggattgcccccactt 53559359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 345
Target Start/End: Complemental strand, 22827623 - 22827511
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||||| | ||||| || ||| ||||  | ||||  || |||| |||| |||||||||||||||||    ||||||| ||||||| |||||||     
T  22827623 tcttagaaatcgtggttgggcctaacacaacccgacaaaaccggcttgtgaggtgaggattgcccccactta----taaacacgttgtcaggccatctcc 22827528  T
Q  329 tatccgatgtaggactc 345  Q
    |||||||||| ||||||    
T  22827527 tatccgatgtgggactc 22827511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 28208405 - 28208452
Alignment:
Q  305 taaacacattgtcagaccatctcttatccgatgtaggactcattaaca 352  Q
    |||||||||||| |||||||||||||||| |||| |||||| ||||||    
T  28208405 taaacacattgttagaccatctcttatccaatgtgggactctttaaca 28208452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 345
Target Start/End: Complemental strand, 35788744 - 35788632
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||||| | ||||| || ||| |||| || ||||  || |||| |||| |||||||||||||||||    ||||||||||||||| |||| ||     
T  35788744 tcttagaaatcgtggttgggcctaacacaaccccataaaaccggcttgtgaggtgaggattgcccccactta----taaacacattgtcaggccatgtcc 35788649  T
Q  329 tatccgatgtaggactc 345  Q
    |||| ||||| ||||||    
T  35788648 tatctgatgtgggactc 35788632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 345
Target Start/End: Original strand, 22231117 - 22231184
Alignment:
Q  274 ttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    |||| |||| ||||||| ||||||||||||    |||||||||||| |||| || |||||||||||||||||    
T  22231117 ttgtgaggtgaggattgtccccacttataa----acacattgtcaggccatatcctatccgatgtaggactc 22231184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 345
Target Start/End: Original strand, 39902607 - 39902674
Alignment:
Q  274 ttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    |||| |||| ||||||||||||||||||||    |||||||||||| |||| || |||||||||| ||||||    
T  39902607 ttgtgaggtgaggattgcccccacttataa----acacattgtcaggccatgtcctatccgatgtgggactc 39902674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 345
Target Start/End: Complemental strand, 21498437 - 21498327
Alignment:
Q  231 ttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctctta 330  Q
    |||||||||| | ||||| || |||||||| || ||||  || |||| |||| |||||||||||||||||    |||||| |||||||| ||| ||| ||    
T  21498437 ttagaaatcgtggttgggcctaacataaccccacaaaaccggcttgtgaggtgaggattgcccccactta----taaacaaattgtcaggccaactccta 21498342  T
Q  331 tccgatgtaggactc 345  Q
     ||||||| ||||||    
T  21498341 accgatgtgggactc 21498327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 338
Target Start/End: Original strand, 400592 - 400669
Alignment:
Q  257 aacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgt 338  Q
    ||||||| ||||  || |||| |||| |||||| |||||||||||||    |||||||||||||||||||| |||| |||||    
T  400592 aacctcacaaaaccggcttgtgaggtgaggatttcccccacttataa----acacattgtcagaccatctcatatctgatgt 400669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 29459597 - 29459657
Alignment:
Q  98 cactttttaagaatttttaatttaaaaactattcactgcaaaagtttaatacttcaatttt 158  Q
    ||||||||||| ||||| |||| | |||||||||| || ||| |||||||||||| |||||    
T  29459597 cactttttaaggattttcaattaagaaactattcattgaaaacgtttaatacttcgatttt 29459657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 353
Target Start/End: Original strand, 41037094 - 41037142
Alignment:
Q  305 taaacacattgtcagaccatctcttatccgatgtaggactcattaacac 353  Q
    |||||||| |||||||| |||| |||||||||||| ||||| |||||||    
T  41037094 taaacacactgtcagactatcttttatccgatgtaagactctttaacac 41037142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 338
Target Start/End: Original strand, 50543329 - 50543434
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||||| | ||||| || ||| |||| || ||||  || ||||  ||| |||||||||||||||||||     |||||||||||||||||| |     
T  50543329 tcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtggggtgaggattgcccccacttatac----acacattgtcagaccatcacc 50543424  T
Q  329 tatccgatgt 338  Q
    ||||||||||    
T  50543425 tatccgatgt 50543434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 345
Target Start/End: Original strand, 53828287 - 53828400
Alignment:
Q  228 ttcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctc 327  Q
    ||||||||||| | | ||||| || ||| |||| || ||||| ||||| | |||| |||||||||||||||||    |||||| |||||||| ||| |||    
T  53828287 ttcttagaaattgtgattgggcctaacacaaccccacaaaatcggtttatgaggtgaggattgcccccactta----taaacaaattgtcaggccaactc 53828382  T
Q  328 ttatccgatgtaggactc 345  Q
     || ||||||| ||||||    
T  53828383 ctaaccgatgtgggactc 53828400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 345
Target Start/End: Complemental strand, 2001 - 1889
Alignment:
Q  229 tcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctct 328  Q
    |||||||||| | | ||||| || ||| |||| || ||||  || ||||||||| |||||||||||||||||    |||||||||||||||||||| ||     
T  2001 tcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaaggtgaggattgcccccactta----taaacacattgtcagaccatgtcc 1906  T
Q  329 tatccgatgtaggactc 345  Q
    | |||||||| ||||||    
T  1905 tgtccgatgtgggactc 1889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 345
Target Start/End: Complemental strand, 2237 - 2124
Alignment:
Q  228 ttcttagaaatcgagcttgggtcttacataacctcaaaaaattggtttgtaaggtaaggattgcccccacttataattaaacacattgtcagaccatctc 327  Q
    ||||||||||| | | ||||| || ||| |||| || ||||  || ||||||||| |||||||||||||||||    ||||||||||||||| |||| ||    
T  2237 ttcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaaggtgaggattgcccccactta----taaacacattgtcaggccatgtc 2142  T
Q  328 ttatccgatgtaggactc 345  Q
     | |||||||| ||||||    
T  2141 ctgtccgatgtgggactc 2124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 345
Target Start/End: Original strand, 5808 - 5865
Alignment:
Q  284 aggattgcccccacttataattaaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    ||||||||||||||||||||    |||||||||||||| || ||||||||||||| ||||||    
T  5808 aggattgcccccacttataa----acacattgtcagactatgtcttatccgatgtgggactc 5865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 67534 - 67496
Alignment:
Q  265 aaaattggtttgtaaggtaaggattgcccccacttataa 303  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  67534 aaaatcggtttgtaaggtgaggattgcccccacttataa 67496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 345
Target Start/End: Complemental strand, 14551 - 14511
Alignment:
Q  305 taaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    ||||||||||||||||||||| | |||||||||| ||||||    
T  14551 taaacacattgtcagaccatcacctatccgatgtgggactc 14511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 288728 - 288768
Alignment:
Q  305 taaacacattgtcagaccatctcttatccgatgtaggactc 345  Q
    |||| |||||||||||||||||| |||||||||| ||||||    
T  288728 taaatacattgtcagaccatctcctatccgatgtgggactc 288768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University