View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7626_low_9 (Length: 355)
Name: NF7626_low_9
Description: NF7626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7626_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 34770484 - 34770807
Alignment:
| Q |
19 |
cttatagcttgtgttacatgatagattgatcacaaattaccaaaatcatgttatgaagatttgtaatccttggtgtagtaactagtaagtgtgaggttga |
118 |
Q |
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| T |
34770484 |
cttatagcttgtgttacatgatagattgatcacaaattaccaaaatcatgttatgaagatttgtaatccttggtgtagtaactagtaagtgtgaggttga |
34770583 |
T |
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| Q |
119 |
tccaaaaactattttacattgtcttgataggatgtccatacacgatggttttgtggctca---atgatgtcccaatggaagatagtattgatttctttgt |
215 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34770584 |
tccaaaaactactttacattgtcttgataggatgtccatacgcgatggttttgtggctcaatgatgatgtcccaatggaagatagtattgatttctttgt |
34770683 |
T |
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| Q |
216 |
tggtaatgtgatgcaaagggtagaattaaattgatcaaagccaactaggagtgtattatagtcagatcgaaaagaattttgagcagtcatgtgttgtgag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34770684 |
tggtaatgtgatgcaaagggtagaattaaattgatcaaagccaactaggagtgtattatagttagatcgaaaagaattttgagcagtcatgtgttgtgag |
34770783 |
T |
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| Q |
316 |
atcttcaaagtcgtggattgatgt |
339 |
Q |
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| T |
34770784 |
atcttcaaagtcgtggattgatgt |
34770807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 34781429 - 34781752
Alignment:
| Q |
19 |
cttatagcttgtgttacatgatagattgatcacaaattaccaaaatcatgttatgaagatttgtaatccttggtgtagtaactagtaagtgtgaggttga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34781429 |
cttatagcttgtgttacatgatagattgatcacaaattaccaaaatcatgttatgaagatttgtaatccttggtgtagtaactagtaagtgtgaggttga |
34781528 |
T |
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| Q |
119 |
tccaaaaactattttacattgtcttgataggatgtccatacacgatggttttgtggctca---atgatgtcccaatggaagatagtattgatttctttgt |
215 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34781529 |
tccaaaaactactttacattgtcttgataggatgtccatacgcgatggttttgtggctcaatgatgatgtcccaatggaagatagtattgatttctttgt |
34781628 |
T |
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| Q |
216 |
tggtaatgtgatgcaaagggtagaattaaattgatcaaagccaactaggagtgtattatagtcagatcgaaaagaattttgagcagtcatgtgttgtgag |
315 |
Q |
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| T |
34781629 |
tggtaatgtgatgcaaagggtagaattaaattgatcaaagccaactaggagtgtattatagttagatcgaaaagaattttgagcagtcatgtgttgtgag |
34781728 |
T |
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| Q |
316 |
atcttcaaagtcgtggattgatgt |
339 |
Q |
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|||||||||||||||||||||||| |
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| T |
34781729 |
atcttcaaagtcgtggattgatgt |
34781752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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