View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7627_high_2 (Length: 445)

Name: NF7627_high_2
Description: NF7627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7627_high_2
NF7627_high_2
[»] chr4 (26 HSPs)
chr4 (256-428)||(8011169-8011341)
chr4 (257-385)||(8889233-8889361)
chr4 (249-385)||(5361959-5362095)
chr4 (256-385)||(17466083-17466212)
chr4 (251-385)||(36120823-36120957)
chr4 (256-356)||(7044731-7044831)
chr4 (251-385)||(13551618-13551752)
chr4 (268-385)||(9770128-9770245)
chr4 (274-385)||(9911407-9911518)
chr4 (267-385)||(23064959-23065077)
chr4 (251-384)||(13023566-13023702)
chr4 (251-329)||(6347116-6347194)
chr4 (251-385)||(10142898-10143032)
chr4 (256-385)||(5375668-5375797)
chr4 (249-356)||(18459733-18459840)
chr4 (305-385)||(37240311-37240390)
chr4 (254-356)||(7815559-7815661)
chr4 (251-329)||(24719516-24719594)
chr4 (256-355)||(4156767-4156866)
chr4 (251-323)||(7452419-7452491)
chr4 (383-431)||(18459647-18459695)
chr4 (350-385)||(4157053-4157088)
chr4 (350-385)||(17466280-17466315)
chr4 (385-419)||(7452563-7452597)
chr4 (351-388)||(5361855-5361892)
chr4 (383-431)||(6347014-6347062)
[»] chr5 (17 HSPs)
chr5 (250-385)||(19578940-19579075)
chr5 (256-385)||(18843719-18843848)
chr5 (251-385)||(21059152-21059285)
chr5 (256-385)||(43234872-43235001)
chr5 (251-385)||(18051526-18051660)
chr5 (251-385)||(22645715-22645849)
chr5 (256-377)||(20923722-20923843)
chr5 (256-385)||(38158250-38158379)
chr5 (256-384)||(23172425-23172557)
chr5 (260-370)||(27340197-27340307)
chr5 (301-385)||(19979648-19979732)
chr5 (270-385)||(41688661-41688775)
chr5 (256-326)||(19042444-19042514)
chr5 (297-383)||(20320988-20321074)
chr5 (252-325)||(24106641-24106714)
chr5 (256-318)||(20320928-20320990)
chr5 (385-430)||(26021408-26021453)
[»] chr2 (29 HSPs)
chr2 (256-431)||(25539176-25539351)
chr2 (251-385)||(31237973-31238107)
chr2 (256-385)||(35565950-35566079)
chr2 (251-385)||(30432418-30432552)
chr2 (249-381)||(23863321-23863453)
chr2 (256-384)||(31578009-31578136)
chr2 (250-385)||(20063712-20063847)
chr2 (251-385)||(1404782-1404916)
chr2 (251-385)||(36429847-36429981)
chr2 (256-431)||(19491859-19492030)
chr2 (257-388)||(15588843-15588973)
chr2 (251-358)||(1690785-1690892)
chr2 (251-325)||(17995054-17995128)
chr2 (256-351)||(16766714-16766809)
chr2 (250-312)||(15627653-15627715)
chr2 (251-355)||(5395674-5395778)
chr2 (290-354)||(31023261-31023325)
chr2 (350-385)||(13502566-13502601)
chr2 (351-385)||(1404985-1405019)
chr2 (335-385)||(1690724-1690774)
chr2 (251-357)||(15266081-15266187)
chr2 (257-324)||(27406782-27406851)
chr2 (250-339)||(27750194-27750283)
chr2 (350-384)||(31237870-31237904)
chr2 (268-356)||(13503067-13503156)
chr2 (290-355)||(34841594-34841659)
chr2 (256-296)||(29660897-29660937)
chr2 (352-384)||(34841784-34841816)
chr2 (350-378)||(36430049-36430077)
[»] chr1 (28 HSPs)
chr1 (258-428)||(17055952-17056122)
chr1 (251-385)||(9955031-9955165)
chr1 (256-385)||(12513285-12513414)
chr1 (251-378)||(21846271-21846398)
chr1 (251-385)||(13100190-13100324)
chr1 (251-385)||(41032666-41032800)
chr1 (256-385)||(13276262-13276391)
chr1 (256-385)||(19009942-19010071)
chr1 (256-385)||(23528660-23528789)
chr1 (251-385)||(9352059-9352193)
chr1 (251-385)||(9327211-9327345)
chr1 (251-385)||(18304807-18304941)
chr1 (256-327)||(30619079-30619150)
chr1 (256-385)||(42180061-42180190)
chr1 (250-385)||(25146765-25146899)
chr1 (251-384)||(16125452-16125588)
chr1 (290-385)||(17869746-17869841)
chr1 (251-356)||(18337547-18337651)
chr1 (268-385)||(9128836-9128953)
chr1 (256-328)||(14074423-14074495)
chr1 (256-356)||(27917477-27917577)
chr1 (270-317)||(18228230-18228277)
chr1 (256-326)||(12800636-12800706)
chr1 (251-356)||(24117006-24117111)
chr1 (341-385)||(32881416-32881460)
chr1 (350-384)||(16434775-16434809)
chr1 (332-370)||(18228281-18228319)
chr1 (351-385)||(47785958-47785992)
[»] scaffold0186 (1 HSPs)
scaffold0186 (251-385)||(8442-8576)
[»] chr6 (24 HSPs)
chr6 (249-385)||(30912408-30912544)
chr6 (256-385)||(26053292-26053421)
chr6 (256-385)||(26073345-26073474)
chr6 (251-385)||(27233273-27233407)
chr6 (256-385)||(17250061-17250190)
chr6 (251-377)||(6943464-6943590)
chr6 (250-385)||(11327567-11327702)
chr6 (251-385)||(17543736-17543870)
chr6 (267-385)||(23897826-23897944)
chr6 (256-385)||(15528106-15528235)
chr6 (260-385)||(22498881-22499006)
chr6 (251-385)||(7223518-7223645)
chr6 (256-384)||(7918378-7918506)
chr6 (259-385)||(19748340-19748466)
chr6 (256-384)||(2912245-2912372)
chr6 (251-381)||(10509023-10509153)
chr6 (251-385)||(17103201-17103328)
chr6 (301-385)||(21354789-21354873)
chr6 (259-329)||(3573984-3574054)
chr6 (251-326)||(5422803-5422878)
chr6 (257-344)||(18491074-18491161)
chr6 (290-354)||(4841946-4842010)
chr6 (373-431)||(3573921-3573979)
chr6 (268-328)||(8285776-8285836)
[»] chr7 (36 HSPs)
chr7 (251-385)||(26281306-26281439)
chr7 (256-392)||(22687653-22687789)
chr7 (256-385)||(24990067-24990196)
chr7 (122-219)||(7726020-7726115)
chr7 (251-385)||(24725473-24725607)
chr7 (256-385)||(5058533-5058662)
chr7 (273-385)||(8343796-8343908)
chr7 (261-385)||(11324988-11325111)
chr7 (250-385)||(39182258-39182392)
chr7 (251-381)||(14055250-14055380)
chr7 (251-381)||(14365278-14365408)
chr7 (251-384)||(8330042-8330175)
chr7 (256-385)||(8346529-8346658)
chr7 (250-385)||(7730339-7730473)
chr7 (251-385)||(27221417-27221551)
chr7 (256-385)||(5715294-5715422)
chr7 (259-376)||(8571250-8571367)
chr7 (256-385)||(11326390-11326519)
chr7 (256-385)||(44944841-44944974)
chr7 (251-385)||(9685240-9685374)
chr7 (256-385)||(4247360-4247489)
chr7 (292-385)||(1977692-1977785)
chr7 (251-385)||(17811350-17811480)
chr7 (122-226)||(7736370-7736472)
chr7 (256-371)||(21846436-21846550)
chr7 (272-385)||(27509939-27510052)
chr7 (256-355)||(30294179-30294275)
chr7 (1-63)||(7726173-7726232)
chr7 (332-394)||(20570872-20570934)
chr7 (261-381)||(26617472-26617596)
chr7 (383-430)||(21157714-21157761)
chr7 (205-246)||(7725740-7725781)
chr7 (269-325)||(4574488-4574544)
chr7 (350-385)||(8329937-8329972)
chr7 (251-329)||(21157826-21157904)
chr7 (350-384)||(26565442-26565476)
[»] chr3 (28 HSPs)
chr3 (251-385)||(29067283-29067417)
chr3 (256-431)||(24649638-24649814)
chr3 (256-385)||(20756043-20756172)
chr3 (251-385)||(28745769-28745903)
chr3 (251-385)||(24620196-24620333)
chr3 (251-385)||(8156126-8156261)
chr3 (256-385)||(3449288-3449416)
chr3 (252-377)||(21963429-21963554)
chr3 (252-377)||(21985865-21985990)
chr3 (256-385)||(39427906-39428035)
chr3 (251-385)||(17064320-17064454)
chr3 (270-382)||(22494780-22494892)
chr3 (259-378)||(30727694-30727813)
chr3 (269-377)||(22137295-22137403)
chr3 (259-385)||(22356048-22356175)
chr3 (251-356)||(15806531-15806635)
chr3 (274-356)||(10872971-10873053)
chr3 (251-385)||(25870363-25870506)
chr3 (251-356)||(27676355-27676460)
chr3 (251-346)||(17796267-17796362)
chr3 (251-346)||(17796376-17796471)
chr3 (251-346)||(19104707-19104802)
chr3 (251-346)||(19104816-19104911)
chr3 (256-329)||(28135726-28135799)
chr3 (332-385)||(42696927-42696980)
chr3 (350-385)||(17064508-17064543)
chr3 (251-346)||(17796485-17796580)
chr3 (251-346)||(19104925-19105020)
[»] chr8 (27 HSPs)
chr8 (255-384)||(3094250-3094379)
chr8 (251-385)||(5922048-5922182)
chr8 (256-383)||(45403033-45403160)
chr8 (256-385)||(15294674-15294803)
chr8 (256-385)||(15475043-15475172)
chr8 (256-385)||(17646997-17647126)
chr8 (251-385)||(11879599-11879733)
chr8 (251-385)||(11897015-11897149)
chr8 (256-385)||(19704451-19704581)
chr8 (251-385)||(31424162-31424296)
chr8 (251-385)||(27836460-27836594)
chr8 (272-385)||(29384313-29384425)
chr8 (267-385)||(22910198-22910316)
chr8 (291-388)||(6810861-6810957)
chr8 (300-385)||(23142223-23142308)
chr8 (250-327)||(477101-477178)
chr8 (251-354)||(15761466-15761569)
chr8 (269-329)||(24056620-24056680)
chr8 (251-300)||(23136348-23136397)
chr8 (272-384)||(15231744-15231856)
chr8 (256-371)||(6292352-6292467)
chr8 (251-385)||(7489279-7489414)
chr8 (350-385)||(29384205-29384240)
chr8 (282-355)||(8582000-8582073)
chr8 (341-385)||(9212251-9212295)
chr8 (251-303)||(9212296-9212348)
chr8 (352-384)||(26575017-26575049)
[»] scaffold0042 (2 HSPs)
scaffold0042 (249-385)||(93702-93836)
scaffold0042 (350-384)||(93599-93633)
[»] scaffold0510 (1 HSPs)
scaffold0510 (267-385)||(96-215)
[»] scaffold0417 (1 HSPs)
scaffold0417 (267-385)||(7451-7569)
[»] scaffold0048 (2 HSPs)
scaffold0048 (251-354)||(48816-48918)
scaffold0048 (292-354)||(61410-61472)
[»] scaffold0036 (1 HSPs)
scaffold0036 (251-329)||(37218-37296)
[»] scaffold0603 (1 HSPs)
scaffold0603 (251-329)||(9072-9150)
[»] scaffold0115 (1 HSPs)
scaffold0115 (256-325)||(35115-35184)
[»] scaffold0259 (1 HSPs)
scaffold0259 (352-384)||(18587-18619)


Alignment Details
Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 256 - 428
Target Start/End: Complemental strand, 8011341 - 8011169
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| || ||| |||||||||||| || |||||||||| |||||||||||||||||||||||||||||  |||||||||||||| ||||||||     
T  8011341 ttgtcaaaatcccaactcaaatcctaaaattcaggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaatgagcaaaatt 8011242  T
Q  356 catcgattttgattgcaattttacgatttcatacaaaattgcagaattttaaagggttttgaagaactttgtc 428  Q
    |||||||||||||||| ||||| |||||||| ||||||| |||| ||||||||||||||||||||| ||||||    
T  8011241 catcgattttgattgcgattttgcgatttcaaacaaaatcgcaggattttaaagggttttgaagaattttgtc 8011169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 257 - 385
Target Start/End: Original strand, 8889233 - 8889361
Alignment:
Q  257 tgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatcc 356  Q
    ||||||||| |||||||||||||||||||||| ||||||| || |||||||||| |||||||||||||| ||| |||||||||||||||| ||||||| |    
T  8889233 tgtcaaaatcccgacttaaatcctaaaatccaggattttgtgaatttcttcaccatcaacgactcaaattcataatagaatcccaaaataggcaaaattc 8889332  T
Q  357 atcgattttgattgcaattttacgatttc 385  Q
    ||||||||||||||| |||||||||||||    
T  8889333 atcgattttgattgcgattttacgatttc 8889361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 249 - 385
Target Start/End: Complemental strand, 5362095 - 5361959
Alignment:
Q  249 tacattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataag 348  Q
    |||||| |||||||||| ||||||||||||||||||| || |||||||||| |||||||| ||||||||||||||||||||  |||||| |||||||| |    
T  5362095 tacattgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcatcttcaacgactcaaatccatagtagaattccaaaatagg 5361996  T
Q  349 caaaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||| ||||||||||||||||  |||||||||||||    
T  5361995 caaaacccatcgattttgattgagattttacgatttc 5361959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 17466083 - 17466212
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    ||||||||||||| ||||||||| ||||||  | ||||||||||||||||||| ||| || ||||||||||||| ||||||||| |||||||||||||||    
T  17466083 ttgtcaaaattccaacttaaatcttaaaatttaggattttgcgattttcttcatctttaaggactcaaatccataatagaatcctaaaataagcaaaatc 17466182  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
    ||||||||| |||||| |||||||||||||    
T  17466183 catcgatttagattgcgattttacgatttc 17466212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 251 - 385
Target Start/End: Original strand, 36120823 - 36120957
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| ||||||||||||||| ||||||  ||||||  | ||||||||||||||||||||||||||||||| |||||||| ||| ||| | ||||||||||    
T  36120823 cattgttgtcaaaattccgatttaaattttaaaatttaggattttgcgattttcttcaccttcaacgacttaaatccataataaaattctaaaataagca 36120922  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    |||| |||||||||||||||| |||||||||||||    
T  36120923 aaattcatcgattttgattgcgattttacgatttc 36120957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 256 - 356
Target Start/End: Original strand, 7044731 - 7044831
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| ||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||   |||||||||||||||||||||||    
T  7044731 ttgtcaaaatcccgacttaaatcctaaaatccatgattttgcaactttattcaccttcaacgactcaaatccatagcagaatcccaaaataagcaaaatc 7044830  T
Q  356 c 356  Q
    |    
T  7044831 c 7044831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 251 - 385
Target Start/End: Complemental strand, 13551752 - 13551618
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| ||||||||||  ||||||| ||||||||||  | |||||||||| ||| |||||||||||||||||||||||||  ||||||  |||||||  ||    
T  13551752 cattgttgtcaaaatctcgacttatatcctaaaatttaggattttgcgacttttttcaccttcaacgactcaaatccatattagaatttcaaaatagaca 13551653  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||||||||||||| ||||| |||||| ||||||    
T  13551652 aaatccatcgattttaattgcgattttatgatttc 13551618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 268 - 385
Target Start/End: Original strand, 9770128 - 9770245
Alignment:
Q  268 cgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttga 367  Q
    |||||||||| |||||||| | ||||||| || ||| |||||||||||||||||||||||||  |||||||| ||||||  ||||||| ||| |||||||    
T  9770128 cgacttaaattctaaaatctaggattttgtgacttttttcaccttcaacgactcaaatccatagtagaatcctaaaatagacaaaatctatcaattttga 9770227  T
Q  368 ttgcaattttacgatttc 385  Q
    |||| |||||||||||||    
T  9770228 ttgcgattttacgatttc 9770245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 274 - 385
Target Start/End: Complemental strand, 9911518 - 9911407
Alignment:
Q  274 aaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaa 373  Q
    |||||||||||| || |||||||| | ||||||||||||||||| |  ||||||||  |||||||| |||||  |||||||||||||||||||||||| |    
T  9911518 aaatcctaaaattcaagattttgcaactttcttcaccttcaacggcctaaatccatagtagaatcctaaaattggcaaaatccatcgattttgattgcga 9911419  T
Q  374 ttttacgatttc 385  Q
    ||||||||||||    
T  9911418 ttttacgatttc 9911407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 267 - 385
Target Start/End: Complemental strand, 23065077 - 23064959
Alignment:
Q  267 ccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttg 366  Q
    ||||||||||| ||||||||||  ||||||  | ||||||||| |||||||||||||||||||  |||||| | |||||| |  |||||||||||||||     
T  23065077 ccgacttaaattctaaaatccagtattttgtaactttcttcacattcaacgactcaaatccattgtagaattctaaaataggtcaaatccatcgatttta 23064978  T
Q  367 attgcaattttacgatttc 385  Q
    |||||||||||||||||||    
T  23064977 attgcaattttacgatttc 23064959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 251 - 384
Target Start/End: Original strand, 13023566 - 13023702
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaa-tccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaa--taa 347  Q
    |||| |||||||||| || ||||||||||||||| |  | |||||||||| ||||||||||||||| |||||||||||||  |||||||||||||  ||     
T  13023566 cattgttgtcaaaatcccaacttaaatcctaaaaatttaggattttgcgactttcttcaccttcaatgactcaaatccatagtagaatcccaaaaaatag 13023665  T
Q  348 gcaaaatccatcgattttgattgcaattttacgattt 384  Q
      |||||| ||||||||||||||| ||||||||||||    
T  13023666 ataaaatcaatcgattttgattgcgattttacgattt 13023702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 6347194 - 6347116
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccat 329  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||| | ||| || ||||||||||||||||||||||    
T  6347194 cattattgtcaaaattccaacttaaatcctaaaatccaggattttgcaactttatttaccttcaacgactcaaatccat 6347116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 251 - 385
Target Start/End: Original strand, 10142898 - 10143032
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||| ||||| ||||||||||| |||||||  |  ||||||||| ||||| ||||||||| ||||||| |||||  || ||| ||||||||  ||    
T  10142898 cattgttgtgaaaatcccgacttaaattctaaaatttaatattttgcgactttctccaccttcaatgactcaagtccatagtataattccaaaatagaca 10142997  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||||||||||||||||||  |||||||||||||    
T  10142998 aaatccatcgattttgattgtgattttacgatttc 10143032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 5375668 - 5375797
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| || || ||||| |||||||  | |||||||||| |||||||||||||||||||| |||| ||| |||||||   ||||||  ||||||     
T  5375668 ttgtcaaaatcccaacctaaattctaaaatttaagattttgcgactttcttcaccttcaacgactaaaattcataatagaattttaaaatagacaaaatt 5375767  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
    |||||| ||||||||| |||||||||||||    
T  5375768 catcgactttgattgcgattttacgatttc 5375797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 249 - 356
Target Start/End: Complemental strand, 18459840 - 18459733
Alignment:
Q  249 tacattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataag 348  Q
    |||||| |||| ||||| |||||| ||||||||||||||| |||||||||| | | ||||| |||||||||||||||||||   ||||||| |||||| |    
T  18459840 tacattgttgtaaaaatcccgactaaaatcctaaaatccaagattttgcgactgtattcactttcaacgactcaaatccatagcagaatcctaaaatagg 18459741  T
Q  349 caaaatcc 356  Q
    ||||||||    
T  18459740 caaaatcc 18459733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 305 - 385
Target Start/End: Original strand, 37240311 - 37240390
Alignment:
Q  305 ttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttc 385  Q
    |||||||||||||||||||||||||  ||||| ||||||||| ||| ||| |||||||||||||||| |||||||||||||    
T  37240311 ttcaccttcaacgactcaaatccatagtagaa-cccaaaataggcataattcatcgattttgattgcgattttacgatttc 37240390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 254 - 356
Target Start/End: Original strand, 7815559 - 7815661
Alignment:
Q  254 tattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaa 353  Q
    |||||| ||||| ||||||||||||||||||| ||  |||||| || ||| |||| ||| | ||||||||| ||||  ||||||||||||||| ||||||    
T  7815559 tattgttaaaatcccgacttaaatcctaaaatacagcattttgtgactttattcagcttaagcgactcaaacccatagtagaatcccaaaataggcaaaa 7815658  T
Q  354 tcc 356  Q
    |||    
T  7815659 tcc 7815661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 251 - 329
Target Start/End: Original strand, 24719516 - 24719594
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccat 329  Q
    |||| ||||||||||  |||||||| | ||||||| || |||||||||| ||| |||||||||||||||||||||||||    
T  24719516 cattgttgtcaaaatctcgacttaatttctaaaattcaagattttgcgactttattcaccttcaacgactcaaatccat 24719594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 355
Target Start/End: Original strand, 4156767 - 4156866
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| |||||||||||| ||||||  | ||||||  || ||| |||||||| |||||||||||||  |  |||||||| |||||||||||||||    
T  4156767 ttgtcaaaatcccgacttaaatcttaaaatttaggattttatgactttattcacctttaacgactcaaatctgtagtagaatcctaaaataagcaaaatc 4156866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 323
Target Start/End: Original strand, 7452419 - 7452491
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaa 323  Q
    |||| |||| ||||| ||||||||||| ||||||||||  ||||||| | ||| |||||||||||||||||||    
T  7452419 cattgttgtgaaaatcccgacttaaattctaaaatccagaattttgcaactttattcaccttcaacgactcaa 7452491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 431
Target Start/End: Complemental strand, 18459695 - 18459647
Alignment:
Q  383 ttcatacaaaattgcagaattttaaagggttttgaagaactttgtccat 431  Q
    ||||||||||||||||| |||||||| |||||||||| | |||||||||    
T  18459695 ttcatacaaaattgcaggattttaaacggttttgaaggattttgtccat 18459647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 385
Target Start/End: Original strand, 4157053 - 4157088
Alignment:
Q  350 aaaatccatcgattttgattgcaattttacgatttc 385  Q
    |||||||||||||||||||||| |||||||||||||    
T  4157053 aaaatccatcgattttgattgcgattttacgatttc 4157088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 385
Target Start/End: Original strand, 17466280 - 17466315
Alignment:
Q  350 aaaatccatcgattttgattgcaattttacgatttc 385  Q
    |||||||||||||||||||||||||||||| |||||    
T  17466280 aaaatccatcgattttgattgcaattttacaatttc 17466315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 419
Target Start/End: Original strand, 7452563 - 7452597
Alignment:
Q  385 catacaaaattgcagaattttaaagggttttgaag 419  Q
    ||||||||||||||| |||||||||||||||||||    
T  7452563 catacaaaattgcaggattttaaagggttttgaag 7452597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 388
Target Start/End: Complemental strand, 5361892 - 5361855
Alignment:
Q  351 aaatccatcgattttgattgcaattttacgatttcata 388  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  5361892 aaatccatcgactttgattgcgattttacgatttcata 5361855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 431
Target Start/End: Complemental strand, 6347062 - 6347014
Alignment:
Q  383 ttcatacaaaattgcagaattttaaagggttttgaagaactttgtccat 431  Q
    |||| ||||||| |||| ||||||||||||||||||| | |||||||||    
T  6347062 ttcacacaaaatcgcaggattttaaagggttttgaaggattttgtccat 6347014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 250 - 385
Target Start/End: Original strand, 19578940 - 19579075
Alignment:
Q  250 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagc 349  Q
    ||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  19578940 acattgttgtcaaaattccaacttaaatcataaaatccaggattttgcgattttcttcaccttcaacgacttaaatccatagtagaatcccaaaataagc 19579039  T
Q  350 aaaatccatcgattttgattgcaattttacgatttc 385  Q
    |||||||||||||||||||||| | |||||||||||    
T  19579040 aaaatccatcgattttgattgcgactttacgatttc 19579075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 18843719 - 18843848
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||| ||||||||||||||||||||| ||| || |||||||||| |||||||||||||||||||||||||||||  |||||||||||||||  ||||||     
T  18843719 ttgttaaaattccgacttaaatcctataattcaggattttgcgactttcttcaccttcaacgactcaaatccattgtagaatcccaaaatagacaaaatt 18843818  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
    |||||||||||||||||||| |||||||||    
T  18843819 catcgattttgattgcaattatacgatttc 18843848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 251 - 385
Target Start/End: Complemental strand, 21059285 - 21059152
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||||| |||| ||||||||||||||| | |||||||||| ||||||||| |||||||||||||||||||| ||||||||| ||||| |||    
T  21059285 cattgttgtcaaaatcccgatttaaatcctaaaatctaggattttgcgactttcttcactttcaacgactcaaatccatg-tagaatccctaaataggca 21059187  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    |||| |||||||||||||||| |||||||||||||    
T  21059186 aaattcatcgattttgattgcgattttacgatttc 21059152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 43234872 - 43235001
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| || |||||||||||||||| || |||||||||| |||||||||||||||||||| ||||||||  |||||||| |||||| | ||||||    
T  43234872 ttgtcaaaatcccaacttaaatcctaaaattcaggattttgcgactttcttcaccttcaacgacttaaatccatagtagaatcctaaaataggaaaaatc 43234971  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
    |||||||||||||||  |||||||||||||    
T  43234972 catcgattttgattgtgattttacgatttc 43235001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 385
Target Start/End: Complemental strand, 18051660 - 18051526
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||||| |||||||||||||||||||  | |||||||||| |||||||| ||||||||||||||||| ||  |||||| | |||||| |||    
T  18051660 cattgttgtcaaaatcccgacttaaatcctaaaatataggattttgcgactttcttcaacttcaacgactcaaatctatagtagaattctaaaataggca 18051561  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||||||||||||||||||| ||| |||||||||    
T  18051560 aaatccatcgattttgattgcgattgtacgatttc 18051526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 385
Target Start/End: Complemental strand, 22645849 - 22645715
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||||| ||||||||||||||||||||||  ||||||||| |||||||||||||||||| | ||||||||  || |||||||||||||| |    
T  22645849 cattgttgtcaaaatcccgacttaaatcctaaaatccagtattttgcgactttcttcaccttcaacgatttaaatccatagtaaaatcccaaaataagta 22645750  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    || |||||| ||||||||||| ||||||| |||||    
T  22645749 aattccatctattttgattgcgattttacaatttc 22645715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 256 - 377
Target Start/End: Original strand, 20923722 - 20923843
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| ||||||||||||||||||||||  ||||||||| |||||||||||||||||||  ||||||||  |||||||| |||||| ||||| ||    
T  20923722 ttgtcaaaatcccgacttaaatcctaaaatccagaattttgcgactttcttcaccttcaacgacctaaatccatagtagaatcctaaaataggcaaagtc 20923821  T
Q  356 catcgattttgattgcaatttt 377  Q
    |||||||||||||||| |||||    
T  20923822 catcgattttgattgcgatttt 20923843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 256 - 385
Target Start/End: Complemental strand, 38158379 - 38158250
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    ||||||||||||||||||||||||||||||| | |||||||||| |||||| || |||||| |||||||||||   |||||||||||||||  |||||||    
T  38158379 ttgtcaaaattccgacttaaatcctaaaatctaggattttgcgactttcttgactttcaacaactcaaatccagagtagaatcccaaaatagacaaaatc 38158280  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
    ||| ||||||| |||  |||||||||||||    
T  38158279 cattgattttggttgttattttacgatttc 38158250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 384
Target Start/End: Complemental strand, 23172557 - 23172425
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaa--- 352  Q
    |||||||||| |||||||||||||||||||  | |||||||||| |||||||| ||||||||||| ||||||||  |||||||||||||||  ||||       
T  23172557 ttgtcaaaatcccgacttaaatcctaaaatttaggattttgcgactttcttcatcttcaacgacttaaatccatagtagaatcccaaaatagacaaaatt 23172458  T
Q  353 -atccatcgattttgattgcaattttacgattt 384  Q
     ||| |||||||||||| || ||||||||||||    
T  23172457 catcgatcgattttgatcgcgattttacgattt 23172425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 260 - 370
Target Start/End: Complemental strand, 27340307 - 27340197
Alignment:
Q  260 caaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatc 359  Q
    |||||| |||||||||||| ||||||  |||||||||||| |||||||| ||||||||||||||||| ||  |||||||  |||||| ||||||| ||||    
T  27340307 caaaatcccgacttaaatcataaaatttatgattttgcgactttcttcatcttcaacgactcaaatctatagtagaatcttaaaataggcaaaattcatc 27340208  T
Q  360 gattttgattg 370  Q
    |||||||||||    
T  27340207 gattttgattg 27340197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 301 - 385
Target Start/End: Original strand, 19979648 - 19979732
Alignment:
Q  301 tttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttc 385  Q
    |||||||| |||||||||||||||| |||| ||||||||||||| | ||||||||||| |||||||||||| |||||||||||||    
T  19979648 tttcttcatcttcaacgactcaaattcatggtagaatcccaaaacacgcaaaatccatggattttgattgcgattttacgatttc 19979732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 270 - 385
Target Start/End: Complemental strand, 41688775 - 41688661
Alignment:
Q  270 acttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgatt 369  Q
    |||||||||||||||| |  |||||||| |||||||||||||||||||||| ||||  ||  || ||| | |||||||||||||| ||||||||||||||    
T  41688775 acttaaatcctaaaattcg-gattttgcaattttcttcaccttcaacgacttaaatttatagtaaaattctaaaataagcaaaattcatcgattttgatt 41688677  T
Q  370 gcaattttacgatttc 385  Q
    || |||||||||||||    
T  41688676 gcgattttacgatttc 41688661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 256 - 326
Target Start/End: Complemental strand, 19042514 - 19042444
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatc 326  Q
    |||||||||| || |||||||| |||||||  | ||||||| || ||||||||||||||||||||||||||    
T  19042514 ttgtcaaaatcccaacttaaattctaaaatttaagattttgtgactttcttcaccttcaacgactcaaatc 19042444  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 383
Target Start/End: Original strand, 20320988 - 20321074
Alignment:
Q  297 cgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatt 383  Q
    ||||||||||||||||||| |||| ||||||||  || ||| ||||||||   ||||| |||| | ||||||||| |||||||||||    
T  20320988 cgattttcttcaccttcaatgactaaaatccatagtaaaattccaaaatagataaaattcatcaactttgattgcgattttacgatt 20321074  T

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Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 24106641 - 24106714
Alignment:
Q  252 attattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaat 325  Q
    |||||||||||||| | || ||||||| |||||| || |||||||| | ||||||||||  |||||||||||||    
T  24106641 attattgtcaaaatcctgatttaaatcataaaattcaggattttgcaactttcttcaccagcaacgactcaaat 24106714  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 318
Target Start/End: Original strand, 20320928 - 20320990
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacga 318  Q
    |||||||||| || || |||||||||||||  | |||||||| | ||||||||||||||||||    
T  20320928 ttgtcaaaatcccaacctaaatcctaaaatttaagattttgcaactttcttcaccttcaacga 20320990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 430
Target Start/End: Original strand, 26021408 - 26021453
Alignment:
Q  385 catacaaaattgcagaattttaaagggttttgaagaactttgtcca 430  Q
    |||||||||| |||| ||||||||||||||||||| | ||||||||    
T  26021408 catacaaaatcgcaggattttaaagggttttgaaggattttgtcca 26021453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 256 - 431
Target Start/End: Complemental strand, 25539351 - 25539176
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||| ||||| |||| |||||||||||||| || || ||||| |||||||||||||||||||||| ||||||||   ||||||| |||||||||||||||    
T  25539351 ttgttaaaatcccgatttaaatcctaaaattcaagaatttgcaattttcttcaccttcaacgacttaaatccataggagaatccgaaaataagcaaaatc 25539252  T
Q  356 catcgattttgattgcaattttacgatttcatacaaaattgcagaattttaaagggttttgaagaactttgtccat 431  Q
    |||||||||||| ||| |||| ||||||||||||||||| |||| |||||||||||||||| |||| |||||||||    
T  25539251 catcgattttgactgcgatttaacgatttcatacaaaatcgcaggattttaaagggttttgtagaattttgtccat 25539176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 251 - 385
Target Start/End: Complemental strand, 31238107 - 31237973
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||||| |||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||| |||  |||||||  |||||| | |    
T  31238107 cattgttgtcaaaatcccgacttaaatcctaaaatctaggattttgccactttcttcaccttcaacgactcaaattcatagtagaatcttaaaataggaa 31238008  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||||||||||||||||||| |||||||||||||    
T  31238007 aaatccatcgattttgattgcgattttacgatttc 31237973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 256 - 385
Target Start/End: Complemental strand, 35566079 - 35565950
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| || |||||||||  ||||| || |||||||||| ||||||||  ||||| |||||||||||||| ||||||||||||||| ||||||||    
T  35566079 ttgtcaaaatcccaacttaaatcacaaaattcaggattttgcgactttcttcatattcaatgactcaaatccatggtagaatcccaaaataggcaaaatc 35565980  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
    ||||||||||||||||| ||||||||||||    
T  35565979 catcgattttgattgcagttttacgatttc 35565950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 385
Target Start/End: Original strand, 30432418 - 30432552
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||||| | || |||||| |||||||| | |||||| ||| ||||||| |||||||||||||||||||||  ||||||| |||||||  ||    
T  30432418 cattgttgtcaaaatcctgatttaaattctaaaatctaggatttttcgactttcttcgccttcaacgactcaaatccatagtagaatctcaaaatagaca 30432517  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  30432518 aaatccatcgattttgattgcaattttacgatttc 30432552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 249 - 381
Target Start/End: Complemental strand, 23863453 - 23863321
Alignment:
Q  249 tacattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataag 348  Q
    |||||| |||||||||| ||||||||||| |||||||| |  ||||||||| ||||||||| |||||||||| ||||||||  ||||||| ||||||| |    
T  23863453 tacattgttgtcaaaatcccgacttaaattctaaaatcgagaattttgcgactttcttcactttcaacgactgaaatccatagtagaatctcaaaatagg 23863354  T
Q  349 caaaatccatcgattttgattgcaattttacga 381  Q
    |||||||||||||||||| |||| |||||||||    
T  23863353 caaaatccatcgattttggttgcgattttacga 23863321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 256 - 384
Target Start/End: Original strand, 31578009 - 31578136
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| |||||||||||  ||||||  | ||||||||||||||||||||||||||||| | ||||||  | |||||||| |||||||||||||||    
T  31578009 ttgtcaaaatcccgacttaaatgttaaaatttaagattttgcgattttcttcaccttcaacgatttaaatcctag-tagaatcctaaaataagcaaaatc 31578107  T
Q  356 catcgattttgattgcaattttacgattt 384  Q
    |||| ||||||||||||||||||||||||    
T  31578108 catcaattttgattgcaattttacgattt 31578136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 250 - 385
Target Start/End: Original strand, 20063712 - 20063847
Alignment:
Q  250 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagc 349  Q
    ||||| |||||||||| |||||||||| ||||||||||| | ||||||| ||||||||| |||||| |||| ||||||||  ||||||||||||||| ||    
T  20063712 acattgttgtcaaaatcccgacttaaaacctaaaatccaaggttttgcggttttcttcatcttcaaggacttaaatccatagtagaatcccaaaataggc 20063811  T
Q  350 aaaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||| |||||||||| ||||| |||||||| ||||    
T  20063812 aaaattcatcgattttaattgcgattttacgttttc 20063847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 251 - 385
Target Start/End: Original strand, 1404782 - 1404916
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||||| ||||||||||| |||||||  | ||||||| || |||||||||||||||||||| ||||||||  |||||||| ||| || |||    
T  1404782 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgtgactttcttcaccttcaacgacttaaatccattgtagaatcctaaactatgca 1404881  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||||||||||||||||||  |||||||||||||    
T  1404882 aaatccatcgattttgattgtgattttacgatttc 1404916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 251 - 385
Target Start/End: Original strand, 36429847 - 36429981
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||||| || |||||||||||| |||| | |||||||||| ||||||||||||||||||||||| | |||   |||||| ||||||| |||    
T  36429847 cattgttgtcaaaatcccaacttaaatcctataatctaggattttgcgactttcttcaccttcaacgactcaagttcataggagaatctcaaaataggca 36429946  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||||||||||||||||||| ||| |||||||||    
T  36429947 aaatccatcgattttgattgcgattgtacgatttc 36429981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 256 - 431
Target Start/End: Original strand, 19491859 - 19492030
Alignment:
Q  256 ttgtcaaaattccgacttaaatccta--aaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaa 353  Q
    ||||||||||  ||| ||||||||||  ||||| | |||||||||| |||||||| ||| ||||||||||||||||   ||||||| |||||| | ||||    
T  19491859 ttgtcaaaatctcgaattaaatcctataaaatctaggattttgcgactttcttcatcttaaacgactcaaatccatagcagaatcc-aaaataggtaaaa 19491957  T
Q  354 tccatcgattttgattgcaattttacgatttcatacaaaattgcagaattttaaagggttttgaagaactttgtccat 431  Q
    |||||||||||||||||| ||||||     ||||||||||| |||| ||||||||||||||||||||| ||| |||||    
T  19491958 tccatcgattttgattgcgatttta-----tcatacaaaatcgcaggattttaaagggttttgaagaattttatccat 19492030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 257 - 388
Target Start/End: Complemental strand, 15588973 - 15588843
Alignment:
Q  257 tgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatcc 356  Q
    ||||||||| ||||||||| || |||||| || |||||||||  |||||||||||||||| |||||||| |||  ||||||| |||||||  |||||||     
T  15588973 tgtcaaaatcccgacttaa-tcttaaaattcaggattttgcgtctttcttcaccttcaacaactcaaatacatagtagaatctcaaaatagacaaaatca 15588875  T
Q  357 atcgattttgattgcaattttacgatttcata 388  Q
    |||| |||| ||||| ||||||||||||||||    
T  15588874 atcgttttttattgcgattttacgatttcata 15588843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 251 - 358
Target Start/End: Complemental strand, 1690892 - 1690785
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| ||||||||| ||||||||||||| ||||||  | ||||||| || ||||||||||||| |||||||| ||||||  || |||||||||||| |||    
T  1690892 cattgttgtcaaaactccgacttaaatcttaaaatttaggattttgtgactttcttcaccttcgacgactcagatccatagtaaaatcccaaaataggca 1690793  T
Q  351 aaatccat 358  Q
    ||| ||||    
T  1690792 aaacccat 1690785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 251 - 325
Target Start/End: Original strand, 17995054 - 17995128
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaat 325  Q
    |||| |||| |||||||||||||||| |||||||||||  ||||||||||||| |||||| ||||||||||||||    
T  17995054 cattgttgttaaaattccgacttaaaacctaaaatccagaattttgcgattttattcaccatcaacgactcaaat 17995128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 256 - 351
Target Start/End: Original strand, 16766714 - 16766809
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaa 351  Q
    |||||||||||  |||||||||| ||||||  | |||||| ||||||| |||||||||||||| ||||||||||   ||||||| |||||||||||    
T  16766714 ttgtcaaaattttgacttaaatcttaaaatttaggattttacgattttattcaccttcaacgaatcaaatccatagcagaatcctaaaataagcaa 16766809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 250 - 312
Target Start/End: Original strand, 15627653 - 15627715
Alignment:
Q  250 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcacctt 312  Q
    |||||||||||||||| |||||||||||||||||||  ||||||||| | |||| ||||||||    
T  15627653 acattattgtcaaaatcccgacttaaatcctaaaatttatgattttgtggttttattcacctt 15627715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 355
Target Start/End: Complemental strand, 5395778 - 5395674
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||||||  ||| |||||| ||||||  | |||||||||| ||| |||| ||| || |||||||||||||   |||||| ||||||| |||    
T  5395778 cattgttgtcaaaattttgacctaaatcataaaatataggattttgcgactttattcatcttaaatgactcaaatccatagcagaatctcaaaataggca 5395679  T
Q  351 aaatc 355  Q
    |||||    
T  5395678 aaatc 5395674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 354
Target Start/End: Original strand, 31023261 - 31023325
Alignment:
Q  290 gattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaat 354  Q
    |||||||||| ||| ||||| ||||||||||||||| |||  |||||||| |||||| |||||||    
T  31023261 gattttgcgactttattcactttcaacgactcaaattcatagtagaatcctaaaataggcaaaat 31023325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 385
Target Start/End: Complemental strand, 13502601 - 13502566
Alignment:
Q  350 aaaatccatcgattttgattgcaattttacgatttc 385  Q
    |||||||||||||||||||||| |||||||||||||    
T  13502601 aaaatccatcgattttgattgcgattttacgatttc 13502566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 1404985 - 1405019
Alignment:
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||||||||||||||||||||||||||| |||||    
T  1404985 aaatccatcgattttgattgcaattttacaatttc 1405019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 385
Target Start/End: Complemental strand, 1690774 - 1690724
Alignment:
Q  335 aatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttc 385  Q
    |||||||||||| || ||| |||| |||||||||||| |||||||||||||    
T  1690774 aatcccaaaataggcgaaacccattgattttgattgcgattttacgatttc 1690724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 357
Target Start/End: Original strand, 15266081 - 15266187
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| ||||||||||   || |||||||||||||| || |||||||  | ||| |||| |||||| || ||||||||||| || ||| |||||||| | |    
T  15266081 cattgttgtcaaaatcatgatttaaatcctaaaattcaggattttgtaactttattcatcttcaatgattcaaatccatgttataattccaaaataggaa 15266180  T
Q  351 aaatcca 357  Q
    |||||||    
T  15266181 aaatcca 15266187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 27406782 - 27406851
Alignment:
Q  257 tgtcaaaattccgacttaaatcctaaaatccat--gattttgcgattttcttcaccttcaacgactcaaa 324  Q
    ||||||||| |||| |||||| ||||||||  |  |||||||||||||| || |||||||||||||||||    
T  27406782 tgtcaaaatcccgaattaaattctaaaatctctaggattttgcgattttttttaccttcaacgactcaaa 27406851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 339
Target Start/End: Complemental strand, 27750283 - 27750194
Alignment:
Q  250 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcga-ttttcttcaccttcaacgactcaaatccatgatagaatcc 339  Q
    ||||| ||||||||||  |||||||| ||| ||||| || |||||||||| ||||||| || || |||||||||||||||| | |||||||    
T  27750283 acattgttgtcaaaatcgcgacttaagtcccaaaatacaagattttgcgacttttcttaac-ttaaacgactcaaatccataacagaatcc 27750194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Complemental strand, 31237904 - 31237870
Alignment:
Q  350 aaaatccatcgattttgattgcaattttacgattt 384  Q
    |||||||||||||||||||||||||||||| ||||    
T  31237904 aaaatccatcgattttgattgcaattttacaattt 31237870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 356
Target Start/End: Complemental strand, 13503156 - 13503067
Alignment:
Q  268 cgacttaaatcctaaaa-tccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatcc 356  Q
    ||||||||||| ||||| || | ||||||||||| || ||||| ||||||| ||||||||||| | | ||| | |||||| |||||||||    
T  13503156 cgacttaaatcttaaaaatctaggattttgcgatcttattcactttcaacggctcaaatccataacaaaattctaaaataggcaaaatcc 13503067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 355
Target Start/End: Original strand, 34841594 - 34841659
Alignment:
Q  290 gattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||| ||||| ||| |||||||||||||||||||||||||   ||||| |||||| | ||||||||    
T  34841594 gattctgcgactttattcaccttcaacgactcaaatccataggagaataccaaaacatgcaaaatc 34841659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 29660897 - 29660937
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttg 296  Q
    ||||||||| ||||||||||||||||||||| | |||||||    
T  29660897 ttgtcaaaaatccgacttaaatcctaaaatctaggattttg 29660937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 384
Target Start/End: Original strand, 34841784 - 34841816
Alignment:
Q  352 aatccatcgattttgattgcaattttacgattt 384  Q
    |||||||||||||||||||| ||||||||||||    
T  34841784 aatccatcgattttgattgcgattttacgattt 34841816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 378
Target Start/End: Original strand, 36430049 - 36430077
Alignment:
Q  350 aaaatccatcgattttgattgcaatttta 378  Q
    |||||||||||||||||||||||||||||    
T  36430049 aaaatccatcgattttgattgcaatttta 36430077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 258 - 428
Target Start/End: Complemental strand, 17056122 - 17055952
Alignment:
Q  258 gtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatcca 357  Q
    |||||||| | || ||||||||||||||||| |||||||| ||||||| |||||||||||||||| ||||||  ||||||   |||||||| ||||||||    
T  17056122 gtcaaaatcctgatttaaatcctaaaatccaggattttgcaattttctccaccttcaacgactcagatccatagtagaattttaaaataagtaaaatcca 17056023  T
Q  358 tcgattttgattgcaattttacgatttcatacaaaattgcagaattttaaagggttttgaagaactttgtc 428  Q
    |||||||||||||| |||||||||||||||||||||| |||  ||||||||||||||||||||| ||||||    
T  17056022 tcgattttgattgcgattttacgatttcatacaaaatcgcaagattttaaagggttttgaagaattttgtc 17055952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 251 - 385
Target Start/End: Complemental strand, 9955165 - 9955031
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||||| || ||||||||||||||||  | |||||||||| |||||||||||||||||||| |||||||   |||||||||||||||||||    
T  9955165 cattgttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgacttaaatccaatgtagaatcccaaaataagca 9955066  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||||||||||||||||||| |||||||||||||    
T  9955065 aaatccatcgattttgattgcgattttacgatttc 9955031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 12513285 - 12513414
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| ||||||||||||||| |||| | |||||||||| |||||||| ||||||||||||||||||||  || ||||  ||||||| |||||||    
T  12513285 ttgtcaaaatcccgacttaaatcctacaatctaggattttgcgactttcttcagcttcaacgactcaaatccatagtaaaatcataaaataatcaaaatc 12513384  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
    |||||||||||||||| |||||||||||||    
T  12513385 catcgattttgattgcgattttacgatttc 12513414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 251 - 378
Target Start/End: Complemental strand, 21846398 - 21846271
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||||| |||| ||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||  ||||||| |||||||   |    
T  21846398 cattgttgtcaaaatcccgagttaaatcctaaaatccaggattttgcgacttttttcaccttcaacgactcaaatccatagtagaatctcaaaatagaaa 21846299  T
Q  351 aaatccatcgattttgattgcaatttta 378  Q
    ||||||||||||||||||||| ||||||    
T  21846298 aaatccatcgattttgattgcgatttta 21846271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 385
Target Start/End: Original strand, 13100190 - 13100324
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    ||||||||||||||| || |||||||| |||||||| | |||||| ||| ||||||||| |||||||||||||||||||  |||||||| |||||| |||    
T  13100190 cattattgtcaaaatcccaacttaaattctaaaatcgaggattttacgactttcttcacgttcaacgactcaaatccatagtagaatcctaaaataggca 13100289  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    ||| ||||||||||||||||| ||||||| |||||    
T  13100290 aaaaccatcgattttgattgcgattttacaatttc 13100324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 385
Target Start/End: Complemental strand, 41032800 - 41032666
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| ||||||||||  ||||||||||| || ||| || ||||||||||||||||||||||||||||||||||||||||  |||||| | |||||| |||    
T  41032800 cattgttgtcaaaatctcgacttaaatcgtagaattcaggattttgcgattttcttcaccttcaacgactcaaatccatagtagaattctaaaataggca 41032701  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||||||||||||| ||||| ||||||| |||||    
T  41032700 aaatccatcgattttaattgcgattttacaatttc 41032666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 256 - 385
Target Start/End: Complemental strand, 13276391 - 13276262
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| |||| ||||||||||||||| | |||||||||| |||||||| ||||||||||  ||||||||  |||||||| |||||| ||||||||    
T  13276391 ttgtcaaaatcccgatttaaatcctaaaatctaggattttgcgactttcttcatcttcaacgacctaaatccatagtagaatcctaaaataggcaaaatc 13276292  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
     ||||||||||||||| |||||||||||||    
T  13276291 aatcgattttgattgcgattttacgatttc 13276262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 256 - 385
Target Start/End: Complemental strand, 19010071 - 19009942
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| | ||||||||||||||||| || |||||||||| ||| ||||||||||| |||| ||||||||  || ||| | |||||||||||||||    
T  19010071 ttgtcaaaatccggacttaaatcctaaaattcaggattttgcgacttttttcaccttcaatgacttaaatccatagtaaaattctaaaataagcaaaatc 19009972  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
    |||||||||||||||| |||||||||||||    
T  19009971 catcgattttgattgcgattttacgatttc 19009942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 23528660 - 23528789
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| || ||||||||| |||||| || |||||||||| |||||||| ||||||||||||||||||||  |||||||| |||||| ||||||||    
T  23528660 ttgtcaaaatcccaacttaaatcttaaaattcaggattttgcgactttcttcatcttcaacgactcaaatccatagtagaatcctaaaataggcaaaatc 23528759  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
     ||||||||||| ||| |||||||||||||    
T  23528760 tatcgattttgaatgcgattttacgatttc 23528789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 251 - 385
Target Start/End: Complemental strand, 9352193 - 9352059
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||||| |||||||||||||||||||||| | |||||||| ||||||||||||||| |||||||||| ||   ||| ||||||||||  ||    
T  9352193 cattgttgtcaaaatcccgacttaaatcctaaaatccagggttttgcgactttcttcaccttcaaagactcaaatctatagcagagtcccaaaatagaca 9352094  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    |||||| |||||||||||||| |||||| ||||||    
T  9352093 aaatccgtcgattttgattgcgattttatgatttc 9352059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 251 - 385
Target Start/End: Complemental strand, 9327345 - 9327211
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||| ||||| | |||||||||||||||||  | | |||||||| ||||| |||||||||||||||||||| ||  || ||||||||||||  ||    
T  9327345 cattgttgttaaaatcctgacttaaatcctaaaatttagggttttgcgactttctacaccttcaacgactcaaatctatagtaaaatcccaaaatagaca 9327246  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||||||||||||||||||| |||||||||||||    
T  9327245 aaatccatcgattttgattgcgattttacgatttc 9327211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 251 - 385
Target Start/End: Complemental strand, 18304941 - 18304807
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttc-aacgactcaaatccatgatagaatcccaaaataagc 349  Q
    |||| |||||||||| || |||||||||||||||||||  ||||||||| ||||||||||||| |||||||||||| |||  ||||||| |||||||  |    
T  18304941 cattgttgtcaaaatcccaacttaaatcctaaaatccagtattttgcgactttcttcaccttcaaacgactcaaattcatagtagaatctcaaaatagac 18304842  T
Q  350 aaaatccatcgattttgattgcaattttacgatttc 385  Q
    |||||||||| ||||||||||| | |||||||||||    
T  18304841 aaaatccatcaattttgattgcga-tttacgatttc 18304807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 256 - 327
Target Start/End: Original strand, 30619079 - 30619150
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatcc 327  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30619079 ttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgattttcttcaccttcaacgactcaaatcc 30619150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 256 - 385
Target Start/End: Complemental strand, 42180190 - 42180061
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| || |||||||| ||||||| || |||||||||| ||||||| |||||||||| ||||||||||  ||||||  ||||||| |||||||     
T  42180190 ttgtcaaaatcccaacttaaattctaaaattcaggattttgcgactttcttccccttcaacgagtcaaatccatagtagaatttcaaaataggcaaaata 42180091  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
    |||||||||||||||  ||| |||||||||    
T  42180090 catcgattttgattgtgattctacgatttc 42180061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 250 - 385
Target Start/End: Complemental strand, 25146899 - 25146765
Alignment:
Q  250 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagc 349  Q
    ||||| |||||||||| | ||||||||||||||||| ||  ||||||||| ||||||||||||||||||||||||| |||  |||||||||||||||  |    
T  25146899 acattgttgtcaaaatcctgacttaaatcctaaaattcagaattttgcgactttcttcaccttcaacgactcaaattcatagtagaatcccaaaatagac 25146800  T
Q  350 aaaatccatcgattttgattgcaattttacgatttc 385  Q
    ||| | |||| ||||| ||||| | |||||||||||    
T  25146799 aaagtacatcaattttaattgcga-tttacgatttc 25146765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 251 - 384
Target Start/End: Complemental strand, 16125588 - 16125452
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttctt---caccttcaacgactcaaatccatgatagaatcccaaaataa 347  Q
    ||||||| ||||||| | ||||||||||||||||| || |||||||||| ||||||   |||||||||||||  ||||||||  || ||||  ||||||     
T  16125588 cattattttcaaaatcctgacttaaatcctaaaattcaggattttgcgactttctttttcaccttcaacgacctaaatccatagtaaaatcttaaaatag 16125489  T
Q  348 gcaaaatccatcgattttgattgcaattttacgattt 384  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  16125488 gcaaaatccattgattttgattgcgattttacgattt 16125452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 385
Target Start/End: Complemental strand, 17869841 - 17869746
Alignment:
Q  290 gattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttc 385  Q
    |||||||||| ||||||||||||| |||||  |||||||   |||||||| |||||| ||||||| | ||||||||||||||||||||||||||||    
T  17869841 gattttgcgactttcttcaccttcgacgacctaaatccacagtagaatcctaaaataggcaaaattcttcgattttgattgcaattttacgatttc 17869746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 251 - 356
Target Start/End: Complemental strand, 18337651 - 18337547
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||||| |||||||| | ||||||||||| |||||||| | ||| |||||||||||||||||||||||||   |||| ||||||||| |||    
T  18337651 cattgttgtcaaaatcccgacttata-cctaaaatccaggattttgcaactttattcaccttcaacgactcaaatccatagcagaaccccaaaataggca 18337553  T
Q  351 aaatcc 356  Q
    ||||||    
T  18337552 aaatcc 18337547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 385
Target Start/End: Complemental strand, 9128953 - 9128836
Alignment:
Q  268 cgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttga 367  Q
    |||||||||||||||||   | ||| |||||| ||||||||| || ||||||||||||  ||  |||||||  ||||||  |||||| ||||||||||||    
T  9128953 cgacttaaatcctaaaaattaggatcttgcgactttcttcacatttaacgactcaaatttatagtagaatcttaaaatagacaaaattcatcgattttga 9128854  T
Q  368 ttgcaattttacgatttc 385  Q
    |||| |||| ||||||||    
T  9128853 ttgcgatttgacgatttc 9128836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 328
Target Start/End: Complemental strand, 14074495 - 14074423
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatcca 328  Q
    |||||||||| ||| |||||||||||||||  | |||||||||| ||||||||  ||||||||||||||||||    
T  14074495 ttgtcaaaatcccgtcttaaatcctaaaatgtaggattttgcgactttcttcatgttcaacgactcaaatcca 14074423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 356
Target Start/End: Complemental strand, 27917577 - 27917477
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| ||||||||||| || ||||| | |||||||||||||| || ||||||||| || ||||| |||   |||||| ||| ||||||||||||    
T  27917577 ttgtcaaaatcccgacttaaattctgaaatctaggattttgcgattttatttaccttcaacaacccaaattcatagcagaatcacaagataagcaaaatc 27917478  T
Q  356 c 356  Q
    |    
T  27917477 c 27917477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 317
Target Start/End: Original strand, 18228230 - 18228277
Alignment:
Q  270 acttaaatcctaaaatccatgattttgcgattttcttcaccttcaacg 317  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||||||    
T  18228230 acttaaatcctaaaatccaagattttacgattttcatcaccttcaacg 18228277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 326
Target Start/End: Complemental strand, 12800706 - 12800636
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatc 326  Q
    |||| ||||| || ||||||||||||||||  | |||||| ||| ||||||||| ||||||||||||||||    
T  12800706 ttgtgaaaatcccaacttaaatcctaaaatttaggattttacgactttcttcacattcaacgactcaaatc 12800636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 356
Target Start/End: Original strand, 24117006 - 24117111
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| ||||||||||||| | |||||| |||||||  | |||||| | | ||| |||||||||||||| ||||||  ||  ||||||||||||| || ||    
T  24117006 cattgttgtcaaaattccaatttaaattctaaaatttaagattttacaactttattcaccttcaacgattcaaatttatattagaatcccaaaacaaaca 24117105  T
Q  351 aaatcc 356  Q
    ||||||    
T  24117106 aaatcc 24117111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 385
Target Start/End: Original strand, 32881416 - 32881460
Alignment:
Q  341 aaaataagcaaaatccatcgattttgattgcaattttacgatttc 385  Q
    |||||| ||||||| |||||||||||||||| |||||||||||||    
T  32881416 aaaataggcaaaattcatcgattttgattgcgattttacgatttc 32881460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Original strand, 16434775 - 16434809
Alignment:
Q  350 aaaatccatcgattttgattgcaattttacgattt 384  Q
    ||||||| |||||||||||||||||||||||||||    
T  16434775 aaaatccttcgattttgattgcaattttacgattt 16434809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 370
Target Start/End: Original strand, 18228281 - 18228319
Alignment:
Q  332 tagaatcccaaaataagcaaaatccatcgattttgattg 370  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  18228281 tagaatcccaaaataggcaaaatccatcaattttgattg 18228319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 47785958 - 47785992
Alignment:
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    |||||||||| ||||||||||||||||||||||||    
T  47785958 aaatccatcggttttgattgcaattttacgatttc 47785992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 251 - 385
Target Start/End: Original strand, 8442 - 8576
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||||| || ||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| ||  |||||||||||||||||||    
T  8442 cattgttgtcaaaatccctacttaaatcctaaaatccacgattttgcgactttcttcaccttcaacgacttaaatctattgtagaatcccaaaataagca 8541  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    |||||||| |||||||||||| |||||||||||||    
T  8542 aaatccattgattttgattgcgattttacgatttc 8576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 249 - 385
Target Start/End: Complemental strand, 30912544 - 30912408
Alignment:
Q  249 tacattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataag 348  Q
    |||||| |||||||||| || ||||||||||||||||  | |||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||| |    
T  30912544 tacattgttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgactcaaatccataatagaatcacaaaatagg 30912445  T
Q  349 caaaatccatcgattttgattgcaattttacgatttc 385  Q
    |||||||||| |||||||||||| |||||||||||||    
T  30912444 caaaatccatagattttgattgcgattttacgatttc 30912408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 256 - 385
Target Start/End: Complemental strand, 26053421 - 26053292
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| |||||||||||| ||||||| | |||||||||| ||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||    
T  26053421 ttgtcaaaatcccgacttaaatcttaaaatctaggattttgcgactttcttcaccttcaatgactcaaattcataatagaatcccaaaataagcaaaatc 26053322  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
    |||| ||||||||||  |||||||||||||    
T  26053321 catcaattttgattgtcattttacgatttc 26053292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 256 - 385
Target Start/End: Complemental strand, 26073474 - 26073345
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| |||||||||||| ||||||| | |||||||||| ||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||    
T  26073474 ttgtcaaaatcccgacttaaatcttaaaatctaggattttgcgactttcttcaccttcaatgactcaaattcataatagaatcccaaaataagcaaaatc 26073375  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
    |||| ||||||||||  |||||||||||||    
T  26073374 catcaattttgattgtcattttacgatttc 26073345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 251 - 385
Target Start/End: Complemental strand, 27233407 - 27233273
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||| | |||||||||||||||||||||| ||||||| || |||||||||||||||||||| ||||||||  |||||||||||||||  ||    
T  27233407 cattgttgtcaaactaccgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaacgacttaaatccatagtagaatcccaaaatagaca 27233308  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||||||||||||||||||| |||||| ||||||    
T  27233307 aaatccatcgattttgattgcgattttatgatttc 27233273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 17250061 - 17250190
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||| ||||| |||||||||||||||||||||| |||||||| | |||||||||||||||||||| ||||||||  ||||||||||||||| |||||||     
T  17250061 ttgttaaaatcccgacttaaatcctaaaatccaggattttgcaactttcttcaccttcaacgacttaaatccatactagaatcccaaaataggcaaaatt 17250160  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
    ||| |||||||||||| |||||||||||||    
T  17250161 cattgattttgattgcgattttacgatttc 17250190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 377
Target Start/End: Complemental strand, 6943590 - 6943464
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||||| ||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||| ||  ||||||| |||||||  ||    
T  6943590 cattgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcaccttcaacgactcaaatcgatagtagaatctcaaaatagaca 6943491  T
Q  351 aaatccatcgattttgattgcaatttt 377  Q
    |||| |||||||||||||||| |||||    
T  6943490 aaattcatcgattttgattgcgatttt 6943464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 250 - 385
Target Start/End: Complemental strand, 11327702 - 11327567
Alignment:
Q  250 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagc 349  Q
    ||||| |||||||||| |||||||||| ||||||||||| | ||||||| ||||||||| |||||| |||| ||||||||  ||||||||||||||| ||    
T  11327702 acattgttgtcaaaatcccgacttaaaacctaaaatccaaggttttgcggttttcttcatcttcaaggacttaaatccatagtagaatcccaaaataggc 11327603  T
Q  350 aaaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||| |||||||||| ||||| |||||||| ||||    
T  11327602 aaaattcatcgattttaattgcgattttacgttttc 11327567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 251 - 385
Target Start/End: Complemental strand, 17543870 - 17543736
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| ||||||||||  |||||||||||||||||| || |||||||||| ||| ||||| |||||||||||||||||||  |||||||  ||||||||||    
T  17543870 cattgttgtcaaaatctcgacttaaatcctaaaattcaggattttgcgacttttttcactttcaacgactcaaatccatagtagaatcttaaaataagca 17543771  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||| || |||||||||||| ||||||| |||||    
T  17543770 aaatctatggattttgattgcgattttactatttc 17543736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 267 - 385
Target Start/End: Original strand, 23897826 - 23897944
Alignment:
Q  267 ccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttg 366  Q
    ||||||||||||||||||| || |||||||||| ||||||||| |||||||||||||||||||  || ||| | |||||| || ||||||||||||||||    
T  23897826 ccgacttaaatcctaaaatgcaggattttgcgactttcttcacgttcaacgactcaaatccatagtaaaattctaaaataggcgaaatccatcgattttg 23897925  T
Q  367 attgcaattttacgatttc 385  Q
    ||||| |||||||||||||    
T  23897926 attgcgattttacgatttc 23897944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 256 - 385
Target Start/End: Complemental strand, 15528235 - 15528106
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| ||||||||||||||||||| || |||||||||| |||||||||||| ||||||| |||| |||  |||||||  ||||||  |||||||    
T  15528235 ttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcacctttaacgacttaaattcatagtagaatcttaaaatagacaaaatc 15528136  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
    ||||||||| |||||| |||||||||||||    
T  15528135 catcgatttcgattgcgattttacgatttc 15528106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 260 - 385
Target Start/End: Complemental strand, 22499006 - 22498881
Alignment:
Q  260 caaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatc 359  Q
    |||||| || ||| |||||||||| ||||  ||||||||| |||||||||||| ||||||||||||||||  || |||| |||||||  |||||||||||    
T  22499006 caaaatcccaactaaaatcctaaattccacaattttgcgactttcttcaccttgaacgactcaaatccatagtacaatctcaaaatagacaaaatccatc 22498907  T
Q  360 gattttgattgcaattttacgatttc 385  Q
    |||||| |||||||||||||||||||    
T  22498906 gattttaattgcaattttacgatttc 22498881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 251 - 385
Target Start/End: Original strand, 7223518 - 7223645
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||||| |||||||||||||||||||  | |||||||||| |||||||||||       || ||||||||  |||||| ||||||||||||    
T  7223518 cattgttgtcaaaatcccgacttaaatcctaaaatttaggattttgcgactttcttcacct-------cttaaatccatagtagaattccaaaataagca 7223610  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||||||||||||||||||| |||||||||||||    
T  7223611 aaatccatcgattttgattgcgattttacgatttc 7223645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 256 - 384
Target Start/End: Complemental strand, 7918506 - 7918378
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| ||||||||||| ||||||| || |||||||||| ||| |||||||||||||||| ||||||||  || ||||| || ||||||||||||    
T  7918506 ttgtcaaaatcccgacttaaattctaaaattcaggattttgcgacttttttcaccttcaacgacttaaatccatagtaaaatcctaacataagcaaaatc 7918407  T
Q  356 catcgattttgattgcaattttacgattt 384  Q
     ||||||||||||||  ||||| ||||||    
T  7918406 aatcgattttgattgggattttgcgattt 7918378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 259 - 385
Target Start/End: Original strand, 19748340 - 19748466
Alignment:
Q  259 tcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccat 358  Q
    ||||||| |||||||||||| || |||||| ||||||| ||||||||||||||| || ||||||||||| |  |||||||  |||||| ||||||| |||    
T  19748340 tcaaaatcccgacttaaatcttacaatccaggattttgagattttcttcacctttaatgactcaaatccgtagtagaatcttaaaataggcaaaattcat 19748439  T
Q  359 cgattttgattgcaattttacgatttc 385  Q
    ||||||||||||  |||||||||||||    
T  19748440 cgattttgattgtgattttacgatttc 19748466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 256 - 384
Target Start/End: Complemental strand, 2912372 - 2912245
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| |||||||||||| ||||||  | |||||||| | ||||| || ||||||||| ||||||| ||  |||||||  ||||||||||||||     
T  2912372 ttgtcaaaatcccgacttaaatcttaaaatttaggattttgcaactttctccatcttcaacgattcaaatc-atagtagaatcttaaaataagcaaaatt 2912274  T
Q  356 catcgattttgattgcaattttacgattt 384  Q
    |||||||||||||||||||||||||||||    
T  2912273 catcgattttgattgcaattttacgattt 2912245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 251 - 381
Target Start/End: Complemental strand, 10509153 - 10509023
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    ||||||||||||||| | ||||||||||||||||| ||  | |||| || ||||||||| ||||| |||||||||  ||  ||||||||||||||| |||    
T  10509153 cattattgtcaaaatccagacttaaatcctaaaattcagaaatttgtgactttcttcacattcaatgactcaaatttatagtagaatcccaaaataggca 10509054  T
Q  351 aaatccatcgattttgattgcaattttacga 381  Q
    |||| |||||||||||||| | |||||||||    
T  10509053 aaattcatcgattttgattacgattttacga 10509023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 251 - 385
Target Start/End: Original strand, 17103201 - 17103328
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||||| |||||||||||| |||||| || ||||||||||       ||| ||||||||||||||| |||  |||||||||||||||  ||    
T  17103201 cattgttgtcaaaatcccgacttaaatcttaaaattcaggattttgcga-------cactttcaacgactcaaatgcatagtagaatcccaaaatagaca 17103293  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||||||||||||||||| | |||||||||||||    
T  17103294 aaatccatcgattttgattacgattttacgatttc 17103328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 301 - 385
Target Start/End: Original strand, 21354789 - 21354873
Alignment:
Q  301 tttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttc 385  Q
    |||||| ||||||||||||| ||||||||| |||||||||||||||  |||||||||||| |||| ||||| |||||||||||||    
T  21354789 tttctttaccttcaacgacttaaatccatggtagaatcccaaaatagacaaaatccatcgttttttattgcgattttacgatttc 21354873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 3574054 - 3573984
Alignment:
Q  259 tcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccat 329  Q
    ||||||||||||||||||| ||||||||||  |||| |||| |||||||||||||||||||||||||||||    
T  3574054 tcaaaattccgacttaaattctaaaatccagaatttcgcgactttcttcaccttcaacgactcaaatccat 3573984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 251 - 326
Target Start/End: Complemental strand, 5422878 - 5422803
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatc 326  Q
    |||| |||||||||| ||||||||||| ||||||| ||||||||||| | ||| ||||||||||||||||||||||    
T  5422878 cattgttgtcaaaatcccgacttaaatactaaaattcatgattttgcaactttattcaccttcaacgactcaaatc 5422803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 257 - 344
Target Start/End: Complemental strand, 18491161 - 18491074
Alignment:
Q  257 tgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaa 344  Q
    ||||||||| ||||||||||||||||||||||  |||||||   ||| |||||||||||||||||||||||||   ||||||||||||    
T  18491161 tgtcaaaatcccgacttaaatcctaaaatccagaattttgcatctttattcaccttcaacgactcaaatccatagcagaatcccaaaa 18491074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 354
Target Start/End: Complemental strand, 4842010 - 4841946
Alignment:
Q  290 gattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaat 354  Q
    |||||||||| ||| ||||||||||||||||||||||| |   ||||||||| |||| |||||||    
T  4842010 gattttgcgactttattcaccttcaacgactcaaatccgtagcagaatcccataataggcaaaat 4841946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 431
Target Start/End: Complemental strand, 3573979 - 3573921
Alignment:
Q  373 attttacgatttcatacaaaattgcagaattttaaagggttttgaagaactttgtccat 431  Q
    |||||| ||||||| |||||||||||  || |||||||||||||||||| ||| |||||    
T  3573979 attttaagatttcaaacaaaattgcatgatgttaaagggttttgaagaattttttccat 3573921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 8285836 - 8285776
Alignment:
Q  268 cgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatcca 328  Q
    |||||||| |||||||||||| |||||||||| ||  |  | |||||||||||||||||||    
T  8285836 cgacttaagtcctaaaatccaggattttgcgacttgatctagcttcaacgactcaaatcca 8285776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 251 - 385
Target Start/End: Complemental strand, 26281439 - 26281306
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| ||||||||||||||||||||||| |||||| || |||||||||| |||||||||||||||||||||||||||||  |||||| ||||||||||||    
T  26281439 cattgttgtcaaaattccgacttaaatcataaaattcaggattttgcgactttcttcaccttcaacgactcaaatccattgtagaattccaaaataagca 26281340  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    |||||||||||||||| |||| |||| ||||||||    
T  26281339 aaatccatcgattttg-ttgcgatttaacgatttc 26281306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 256 - 392
Target Start/End: Complemental strand, 22687789 - 22687653
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| ||||||||||||||||||| || || ||||||| |||||||| ||||||| ||||||||||||   |||||||||||||| ||||||||    
T  22687789 ttgtcaaaatcccgacttaaatcctaaaattcaggaatttgcgactttcttcaacttcaacaactcaaatccatcgcagaatcccaaaataggcaaaatc 22687690  T
Q  356 catcgattttgattgcaattttacgatttcatacaaa 392  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  22687689 catcgattttgattgcgattttacgatttcttacaaa 22687653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 256 - 385
Target Start/End: Complemental strand, 24990196 - 24990067
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||||||||||||||||| |||||  | ||||||| || |||||| |||| |||||||||||||||||  |||||||| |||||| ||||||||    
T  24990196 ttgtcaaaattccgacttaaatccaaaaatttaggattttgtgactttctttacctccaacgactcaaatccatagtagaatcctaaaataggcaaaatc 24990097  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
    ||||||||||||||||||||||||||||||    
T  24990096 catcgattttgattgcaattttacgatttc 24990067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 7726115 - 7726020
Alignment:
Q  122 aggttgctgaatttgttcaggaaactcactttaccgtttgagatggaattatatgattcatgttggatttactccataagttgcgcatttccaatata 219  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||  ||||||||||||||    
T  7726115 aggttgctgaatttgttcaggaaactcactttaccgtttgagatagaattacatgattcatgttggatttactctataagtt--gcatttccaatata 7726020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 385
Target Start/End: Complemental strand, 24725607 - 24725473
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||||| | |||||||||||||||||||| |||||| ||| |||||||||||||||| ||||||||||||  ||||||| ||||||| |||    
T  24725607 cattgttgtcaaaatccagacttaaatcctaaaatccaagattttacgactttcttcaccttcaacaactcaaatccatagtagaatcgcaaaataggca 24725508  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||||||| ||||||||| | |||| ||||||||    
T  24725507 aaatccatcaattttgattacgatttgacgatttc 24725473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 5058533 - 5058662
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| ||||||||||||||||||| ||  |||||||||||||||||||||||||||||  ||||||||  |||||||  |||||| ||||||||    
T  5058533 ttgtcaaaatcccgacttaaatcctaaaattcagaattttgcgattttcttcaccttcaacgacctaaatccatagtagaatcttaaaataggcaaaatc 5058632  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
    |  ||||||||||||| |||||||||||||    
T  5058633 ctacgattttgattgcgattttacgatttc 5058662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 273 - 385
Target Start/End: Complemental strand, 8343908 - 8343796
Alignment:
Q  273 taaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgca 372  Q
    |||||||||||||||  |||||||||| |||||||||||||||||||||||||||||  ||||||||||||||| | |||||||||| ||||| |||||     
T  8343908 taaatcctaaaatcctggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaatatgaaaaatccatcaattttaattgcg 8343809  T
Q  373 attttacgatttc 385  Q
    |||||||||||||    
T  8343808 attttacgatttc 8343796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 261 - 385
Target Start/End: Original strand, 11324988 - 11325111
Alignment:
Q  261 aaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcg 360  Q
    ||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||| | |||||| ||||||| |||      
T  11324988 aaaatcccgacttaaatcctaaaattcatgattttgggattttcttcaccttcaacgactcaaatccataatagaattctaaaataggcaaaattcat-a 11325086  T
Q  361 attttgattgcaattttacgatttc 385  Q
    ||||||||||| | |||||||||||    
T  11325087 attttgattgcgaatttacgatttc 11325111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 250 - 385
Target Start/End: Original strand, 39182258 - 39182392
Alignment:
Q  250 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagc 349  Q
    ||||| ||| |||||| | |||||||||||||||||| | |||||||||| || ||||||||||||||||| ||||||||  ||||||||||||||| ||    
T  39182258 acattgttgacaaaatcctgacttaaatcctaaaatctaggattttgcgactt-cttcaccttcaacgactgaaatccatagtagaatcccaaaataggc 39182356  T
Q  350 aaaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||||||||||||||| |||| ||||||| |||||    
T  39182357 aaaatccatcgattttggttgcgattttacaatttc 39182392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 251 - 381
Target Start/End: Original strand, 14055250 - 14055380
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||| ||||| || ||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||| ||  |||||| | |||||| |||    
T  14055250 cattgttgtgaaaatccccacttatatcctaaaatccaagattttgcgactttcttcaccttcaacgactcaaatctatagtagaattctaaaataggca 14055349  T
Q  351 aaatccatcgattttgattgcaattttacga 381  Q
    |||||||| |||||||||||| |||||||||    
T  14055350 aaatccatagattttgattgcgattttacga 14055380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 251 - 381
Target Start/End: Original strand, 14365278 - 14365408
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||| ||||| || ||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||| ||  |||||| | |||||| |||    
T  14365278 cattgttgtgaaaatccccacttatatcctaaaatccaagattttgcgactttcttcaccttcaacgactcaaatctatagtagaattctaaaataggca 14365377  T
Q  351 aaatccatcgattttgattgcaattttacga 381  Q
    |||||||| |||||||||||| |||||||||    
T  14365378 aaatccatagattttgattgcgattttacga 14365408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 251 - 384
Target Start/End: Complemental strand, 8330175 - 8330042
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||||| | ||| ||||| ||||||| ||||||||||||| |||||||||||||||||| ||||||||||  ||||||||||||||| | |    
T  8330175 cattgttgtcaaaatcctgacctaaattctaaaattcatgattttgcgactttcttcaccttcaacgattcaaatccatagtagaatcccaaaataggaa 8330076  T
Q  351 aaatccatcgattttgattgcaattttacgattt 384  Q
    |||| ||| |||||| ||||| ||||||||||||    
T  8330075 aaattcattgattttaattgcgattttacgattt 8330042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 256 - 385
Target Start/End: Complemental strand, 8346658 - 8346529
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| | ||| |||||  ||||||  | |||||||||| |||||||||||||||||||||||||||||  ||||||||||||||| | ||||||    
T  8346658 ttgtcaaaatcctgacctaaatattaaaatttaggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaataggaaaaatc 8346559  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
    |||||||||| ||||| |||||||||||||    
T  8346558 catcgattttaattgcgattttacgatttc 8346529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 250 - 385
Target Start/End: Complemental strand, 7730473 - 7730339
Alignment:
Q  250 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagc 349  Q
    ||||| |||||||||| | |||||||||||||||||||| | |||||||| |||||||||||| ||| |||||||||||   |||||| |||||||| |     
T  7730473 acattgttgtcaaaatcctgacttaaatcctaaaatccagg-ttttgcgactttcttcacctttaacaactcaaatccacagtagaattccaaaatagga 7730375  T
Q  350 aaaatccatcgattttgattgcaattttacgatttc 385  Q
    |||||||||||||||||||||  |||||||||||||    
T  7730374 aaaatccatcgattttgattgagattttacgatttc 7730339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 251 - 385
Target Start/End: Original strand, 27221417 - 27221551
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||| ||||| || |||||||| ||||||| || |||||||||| |||||||| |||||||||||||||| |||  |||||||  |||||  |||    
T  27221417 cattgttgttaaaatcccaacttaaattctaaaattcaggattttgcgactttcttcatcttcaacgactcaaatacatagtagaatcttaaaattggca 27221516  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||||||||||||||||||| |||||||||||||    
T  27221517 aaatccatcgattttgattgcgattttacgatttc 27221551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 5715294 - 5715422
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| ||||||||||||||||||| || |||||||||| ||| | |||||||||| ||| |||| |||  |||||| ||||||||||||||||     
T  5715294 ttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgacttt-tacaccttcaacaacttaaattcatagtagaattccaaaataagcaaaatt 5715392  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
    |||||||||||||||  |||||||||||||    
T  5715393 catcgattttgattgtgattttacgatttc 5715422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 259 - 376
Target Start/End: Original strand, 8571250 - 8571367
Alignment:
Q  259 tcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccat 358  Q
    ||||||| |||||||||||| ||||||||| |||||||||| |||||||||||| ||||||||||||||||  |||||||| ||||||   |||| ||||    
T  8571250 tcaaaatcccgacttaaatcataaaatccaggattttgcgactttcttcacctttaacgactcaaatccatagtagaatcctaaaatagagaaaaaccat 8571349  T
Q  359 cgattttgattgcaattt 376  Q
    ||||||||||||| ||||    
T  8571350 cgattttgattgcgattt 8571367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 11326390 - 11326519
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| || ||||||||||||||||  | |||||||||| |||||||||||||| ||||| ||||||||  |||||||  |||||| ||||||||    
T  11326390 ttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcagcgactaaaatccatagtagaatcttaaaataggcaaaatc 11326489  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
     ||||||||||||||| ||||||| |||||    
T  11326490 tatcgattttgattgcgattttacaatttc 11326519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 256 - 385
Target Start/End: Complemental strand, 44944974 - 44944841
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcac----cttcaacgactcaaatccatgatagaatcccaaaataagcaa 351  Q
    |||||||||| ||||||||||||||||||| || |||||||||| |||||||||    ||||||||| ||||||||||  |||||||| ||||||  |||    
T  44944974 ttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcactcaccttcaacgattcaaatccatagtagaatcctaaaatagtcaa 44944875  T
Q  352 aatccatcgattttgattgcaattttacgatttc 385  Q
    |||||||||||||||||||  ||||||| |||||    
T  44944874 aatccatcgattttgattgggattttactatttc 44944841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 251 - 385
Target Start/End: Complemental strand, 9685374 - 9685240
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| ||||||||||  ||||||| ||||||||||  | |||||||||| ||| |||||||||||||||||||||||||  ||||||  |||||||  ||    
T  9685374 cattgttgtcaaaatctcgacttatatcctaaaatttaggattttgcgacttttttcaccttcaacgactcaaatccatattagaatttcaaaatagaca 9685275  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||||||||||||| ||||| |||||| ||||||    
T  9685274 aaatccatcgattttaattgcgattttatgatttc 9685240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 4247360 - 4247489
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| || | |||||||||||||| || |||||||  | ||||||||| |||||| ||| ||||||||  ||||||||||||||| |||||||     
T  4247360 ttgtcaaaatcccaatttaaatcctaaaattcaggattttgtaactttcttcactttcaacaacttaaatccatagtagaatcccaaaataggcaaaatt 4247459  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
    |||||||||||||||| |||||| ||||||    
T  4247460 catcgattttgattgcgattttatgatttc 4247489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 292 - 385
Target Start/End: Original strand, 1977692 - 1977785
Alignment:
Q  292 ttttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttc 385  Q
    |||||||||||| | |||||||||||||||||||||||  |||||||| |||||| ||||||| | |||||||||||||| |||||| ||||||    
T  1977692 ttttgcgattttttccaccttcaacgactcaaatccatagtagaatcctaaaatatgcaaaattcgtcgattttgattgcgattttaggatttc 1977785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 251 - 385
Target Start/End: Original strand, 17811350 - 17811480
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||||||||||||||     |||||| | |||||||| || ||| |||||||||||||||||||||||||  ||||||   ||||||  ||    
T  17811350 catttttgtcaaaattccgacttat----taaaattcttgattttgtgacttttttcaccttcaacgactcaaatccatagtagaattttaaaatagaca 17811445  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||| ||||||||||||||| |||||||||||||    
T  17811446 aaatcgatcgattttgattgcgattttacgatttc 17811480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 122 - 226
Target Start/End: Complemental strand, 7736472 - 7736370
Alignment:
Q  122 aggttgctgaatttgttcaggaaactcactttaccgtttgagatggaattatatgattcatgttggatttactccataagttgcgcatttccaatatatg 221  Q
    ||||| ||||||||| |||||||||| ||||||||||||||||   ||| |||||||||  ||||||||||||| ||||||  | |||||||||||||||    
T  7736472 aggttactgaatttgatcaggaaacttactttaccgtttgagaaataatcatatgattccggttggatttactctataagt--cacatttccaatatatg 7736375  T
Q  222 catat 226  Q
    |||||    
T  7736374 catat 7736370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 256 - 371
Target Start/End: Complemental strand, 21846550 - 21846436
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| ||||||||||| ||||||| || |||||||||| ||| ||||| |||||||||||| ||||||  |||||| | |||| | | ||||||    
T  21846550 ttgtcaaaatcccgacttaaattctaaaattcaggattttgcgacttt-ttcacattcaacgactcacatccatagtagaattctaaaacaggtaaaatc 21846452  T
Q  356 catcgattttgattgc 371  Q
     |||||||||||||||    
T  21846451 aatcgattttgattgc 21846436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 385
Target Start/End: Complemental strand, 27510052 - 27509939
Alignment:
Q  272 ttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgc 371  Q
    |||||| |||||||  | |||||||||||||||||||| | |||||| ||||||| ||  ||||||   |||||| ||||||| |||| |||||||||||    
T  27510052 ttaaattctaaaataaaggattttgcgattttcttcacatccaacgattcaaatctatagtagaatttaaaaataggcaaaattcatcaattttgattgc 27509953  T
Q  372 aattttacgatttc 385  Q
     |||||||||||||    
T  27509952 gattttacgatttc 27509939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 355
Target Start/End: Original strand, 30294179 - 30294275
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| || ||||||||||||||||||| ||||||| |||||| ||||||||   ||||||||||||||   | |||| ||||||| ||||||||    
T  30294179 ttgtcaaaatcccaacttaaatcctaaaatccaggattttgtgattttattcacctt---cgactcaaatccatagcaaaatctcaaaataggcaaaatc 30294275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 7726232 - 7726173
Alignment:
Q  1 tagtttctgcttaatataaatacggcgtcgtgtttcttgtaatttcagcgatgaagttgcatg 63  Q
    |||||||||||||||||||||||||   ||||||||||||||||||| |||||| ||||||||    
T  7726232 tagtttctgcttaatataaatacgg---cgtgtttcttgtaatttcatcgatgaggttgcatg 7726173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 332 - 394
Target Start/End: Complemental strand, 20570934 - 20570872
Alignment:
Q  332 tagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttcatacaaaat 394  Q
    |||||||  ||||||  ||||||||||||||||||||||||||||||||||||| || |||||    
T  20570934 tagaatctaaaaatagacaaaatccatcgattttgattgcaattttacgatttcttataaaat 20570872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 261 - 381
Target Start/End: Complemental strand, 26617596 - 26617472
Alignment:
Q  261 aaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatcc--atgatagaatcccaaa--ataagcaaaatcc 356  Q
    ||||||| ||||| ||||||||||| || |||||||||| ||| |||||||||||||||  |||| |  ||  |||||| | |||  ||| ||||||||     
T  26617596 aaaattctgactttaatcctaaaattcaggattttgcgacttttttcaccttcaacgacataaattcatatagtagaattctaaaatataggcaaaatct 26617497  T
Q  357 atcgattttgattgcaattttacga 381  Q
    ||||||||||||||| |||||||||    
T  26617496 atcgattttgattgcgattttacga 26617472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 383 - 430
Target Start/End: Complemental strand, 21157761 - 21157714
Alignment:
Q  383 ttcatacaaaattgcagaattttaaagggttttgaagaactttgtcca 430  Q
    |||||||||||| ||||||||||||||| |||||||||| ||||||||    
T  21157761 ttcatacaaaatcgcagaattttaaaggattttgaagaattttgtcca 21157714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 7725781 - 7725740
Alignment:
Q  205 cgcatttccaatatatgcatatgaagtagctatgatgtgttt 246  Q
    |||||||||||||||||||||| |||||| ||||||||||||    
T  7725781 cgcatttccaatatatgcatattaagtaggtatgatgtgttt 7725740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 4574488 - 4574544
Alignment:
Q  269 gacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaat 325  Q
    ||||||||||||||||||||  ||||||||| |||  ||||||||||||| ||||||    
T  4574488 gacttaaatcctaaaatccagaattttgcgactttactcaccttcaacgattcaaat 4574544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 385
Target Start/End: Complemental strand, 8329972 - 8329937
Alignment:
Q  350 aaaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||||||| ||||||||||||||||||||||||||    
T  8329972 aaaatccattgattttgattgcaattttacgatttc 8329937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 21157904 - 21157826
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccat 329  Q
    |||| ||||| |||||| |||||||||| |||||| || | |||||||| |||  |||| | |||||||||||||||||    
T  21157904 cattgttgtcgaaattctgacttaaatcttaaaattcagggttttgcgactttactcacttacaacgactcaaatccat 21157826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Complemental strand, 26565476 - 26565442
Alignment:
Q  350 aaaatccatcgattttgattgcaattttacgattt 384  Q
    |||||||||| ||||||||||||||||||||||||    
T  26565476 aaaatccatcaattttgattgcaattttacgattt 26565442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 251 - 385
Target Start/End: Original strand, 29067283 - 29067417
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||||| ||||||||||| ||||||| || |||||||||| |||||||||||||||||||||||||||||  |||||||||||||||  ||    
T  29067283 cattgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaatagaca 29067382  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||||||||||||||||||  |||||||||||||    
T  29067383 aaatccatcgattttgattgtgattttacgatttc 29067417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 256 - 431
Target Start/End: Complemental strand, 24649814 - 24649638
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaat-aagcaaaat 354  Q
    |||||||||| |||||||||||| ||||||| | ||||||  || || ||||||||||||||||||||||||||  |||||| ||||||| |||||||||    
T  24649814 ttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaattccaaaataaagcaaaat 24649715  T
Q  355 ccatcgattttgattgcaattttacgatttcatacaaaattgcagaattttaaagggttttgaagaactttgtccat 431  Q
     |||| ||||||| ||  ||||||||||||||||||| || |||| ||||||||||||||||||||| ||| |||||    
T  24649714 tcatcaattttgactgtgattttacgatttcatacaatatcgcaggattttaaagggttttgaagaattttatccat 24649638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 20756043 - 20756172
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| |||||||||||  |||||| || |||||||||||||||||||||||||| |||||||||||||  |||||||  |||||| ||||||||    
T  20756043 ttgtcaaaatcccgacttaaattataaaattcaggattttgcgattttcttcaccttcaatgactcaaatccatagtagaatcttaaaataggcaaaatc 20756142  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
     |||||||||||||||||||||||||||||    
T  20756143 aatcgattttgattgcaattttacgatttc 20756172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 385
Target Start/End: Original strand, 28745769 - 28745903
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||||| |||| ||||||||||||||  | |||||||||| ||||||||||||||||||||||||| |||  ||||||| |||||||  ||    
T  28745769 cattgttgtcaaaatcccgatttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgactcaaattcatagtagaatctcaaaatagaca 28745868  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    |||| |||||||||||||||| |||||||||||||    
T  28745869 aaattcatcgattttgattgcgattttacgatttc 28745903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 251 - 385
Target Start/End: Complemental strand, 24620333 - 24620196
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgat---tttcttcaccttcaacgactcaaatccatgatagaatcccaaaataa 347  Q
    |||| ||||||||||||||||||||||||||||||  | ||||||||||    ||||||||||||||||||||||||| ||   ||||||| |||||||     
T  24620333 cattgttgtcaaaattccgacttaaatcctaaaatttaagattttgcgacgactttcttcaccttcaacgactcaaattcacagtagaatctcaaaatag 24620234  T
Q  348 gcaaaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  24620233 gcaaaattcatcgattttaattgcaattttacgatttc 24620196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 251 - 385
Target Start/End: Complemental strand, 8156261 - 8156126
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataag-c 349  Q
    |||| |||||||||| || |||||||| ||||||| ||  ||||| ||||||| ||||||||||| |||||||||||||  || ||||||||||| || |    
T  8156261 cattgttgtcaaaatcccaacttaaattctaaaattcagaattttacgatttttttcaccttcaatgactcaaatccatagtataatcccaaaattagac 8156162  T
Q  350 aaaatccatcgattttgattgcaattttacgatttc 385  Q
    |||||||||||||||||||||| |||||||||||||    
T  8156161 aaaatccatcgattttgattgcgattttacgatttc 8156126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 256 - 385
Target Start/End: Complemental strand, 3449416 - 3449288
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| ||||||||||||||||||| || |||||||||| |||||| |||||||||| || ||||| ||  |||||||| |||||| ||||||||    
T  3449416 ttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttctttaccttcaacg-ctaaaatctatagtagaatcctaaaataggcaaaatc 3449318  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
    ||| |||||| ||||| |||||||||||||    
T  3449317 catagatttttattgcgattttacgatttc 3449288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 252 - 377
Target Start/End: Original strand, 21963429 - 21963554
Alignment:
Q  252 attattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaa 351  Q
    |||||| | ||||| ||||||||||||||||||| || |||||| ||| |||||||||||| ||||||||||||||||  || ||||| |||||| ||||    
T  21963429 attatttttaaaatcccgacttaaatcctaaaattcaagattttacgactttcttcaccttgaacgactcaaatccatagtaaaatcctaaaatatgcaa 21963528  T
Q  352 aatccatcgattttgattgcaatttt 377  Q
    ||||||||||||||||| || |||||    
T  21963529 aatccatcgattttgatagcgatttt 21963554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 252 - 377
Target Start/End: Original strand, 21985865 - 21985990
Alignment:
Q  252 attattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaa 351  Q
    |||||| | ||||| ||||||||||||||||||| || |||||| ||| |||||||||||| ||||||||||||||||  || ||||| |||||| ||||    
T  21985865 attatttttaaaatcccgacttaaatcctaaaattcaagattttacgactttcttcaccttgaacgactcaaatccatagtaaaatcctaaaatatgcaa 21985964  T
Q  352 aatccatcgattttgattgcaatttt 377  Q
    ||||||||||||||||| || |||||    
T  21985965 aatccatcgattttgatagcgatttt 21985990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 39427906 - 39428035
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||| |||| ||||||  ||||||||  |||||||| | ||||||||| |||||||||||||||| ||  |||||||||||||||  |||| ||    
T  39427906 ttgtcaaaatcccgatttaaattttaaaatcctggattttgcaactttcttcacgttcaacgactcaaatcgatagtagaatcccaaaatagacaaagtc 39428005  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
    |||||||||||||||| |||||||||||||    
T  39428006 catcgattttgattgcgattttacgatttc 39428035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 251 - 385
Target Start/End: Original strand, 17064320 - 17064454
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    ||||| ||||||||| |||||||||||| |||||| || |||||||||||| | ||||||||||||||||| ||| |||  |||||| | ||||||  ||    
T  17064320 cattaatgtcaaaatcccgacttaaatcttaaaattcaggattttgcgattgtgttcaccttcaacgactccaattcatagtagaattctaaaatagaca 17064419  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    |||| |||||||||| ||||| |||||||||||||    
T  17064420 aaattcatcgatttttattgcgattttacgatttc 17064454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 270 - 382
Target Start/End: Complemental strand, 22494892 - 22494780
Alignment:
Q  270 acttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgatt 369  Q
    |||||||||||||||||   |||||||||| ||| |||||||||||||||| |||| |||  |||||||| ||||||| |||||| ||||||||||||||    
T  22494892 acttaaatcctaaaatctgagattttgcgacttttttcaccttcaacgactaaaattcatagtagaatcctaaaataaacaaaattcatcgattttgatt 22494793  T
Q  370 gcaattttacgat 382  Q
    || ||||||||||    
T  22494792 gcgattttacgat 22494780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 259 - 378
Target Start/End: Complemental strand, 30727813 - 30727694
Alignment:
Q  259 tcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccat 358  Q
    ||||||| | |||||||||| ||||||||   ||||| ||| |||||||||||||||||||||||||| ||  |||||||||||||||  |||||| |||    
T  30727813 tcaaaatcctgacttaaatcttaaaatcctgaattttacgactttcttcaccttcaacgactcaaatctatagtagaatcccaaaatagacaaaattcat 30727714  T
Q  359 cgattttgattgcaatttta 378  Q
    ||||||||||||| ||||||    
T  30727713 cgattttgattgcgatttta 30727694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 269 - 377
Target Start/End: Original strand, 22137295 - 22137403
Alignment:
Q  269 gacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgat 368  Q
    ||||||||||||||||| || ||| || ||| |||||||||||| |||| |||||||||||  || |||||||||||| |||||||||||||||||| ||    
T  22137295 gacttaaatcctaaaattcaagatgttacgactttcttcaccttgaacgcctcaaatccatagtaaaatcccaaaatatgcaaaatccatcgattttaat 22137394  T
Q  369 tgcaatttt 377  Q
    ||| |||||    
T  22137395 tgcgatttt 22137403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 259 - 385
Target Start/End: Complemental strand, 22356175 - 22356048
Alignment:
Q  259 tcaaaattccgacttaaatcctaaaatccatgattttgcgattttctt-caccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatcca 357  Q
    ||||||||||||||||||||||||||| || ||||||  |||||| || || ||||||| | |  ||| |||  |||||||| |||||||||||||||||    
T  22356175 tcaaaattccgacttaaatcctaaaattcaggattttaagattttttttcagcttcaacaatttgaattcatagtagaatcctaaaataagcaaaatcca 22356076  T
Q  358 tcgattttgattgcaattttacgatttc 385  Q
    |  ||||||||||| |||||||||||||    
T  22356075 tgaattttgattgcgattttacgatttc 22356048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 251 - 356
Target Start/End: Complemental strand, 15806635 - 15806531
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||||| ||||||||||||||| ||||||  ||||||||| ||| ||||||||||| |||||||||||||   |||||||||||| | |||    
T  15806635 cattgttgtcaaaat-ccgacttaaatcctacaatccagaattttgcgactttattcaccttcaatgactcaaatccatagcagaatcccaaaacaggca 15806537  T
Q  351 aaatcc 356  Q
    ||||||    
T  15806536 aaatcc 15806531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 274 - 356
Target Start/End: Complemental strand, 10873053 - 10872971
Alignment:
Q  274 aaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatcc 356  Q
    ||||||||||||||| ||||||| ||| || |||||||||||||||||||||||||   |||||| ||||||| |||||||||    
T  10873053 aaatcctaaaatccaggattttgtgatattattcaccttcaacgactcaaatccatagcagaatctcaaaataggcaaaatcc 10872971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 251 - 385
Target Start/End: Complemental strand, 25870506 - 25870363
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacga----ctcaaatccatgatagaatcccaaaata 346  Q
    |||| ||||||||||  ||||||||||||||||||||| ||||||| || |||||||| |||||||||    ||||||| | |  ||||| | |||||||    
T  25870506 cattgttgtcaaaatctcgacttaaatcctaaaatccaagattttgtgactttcttcatcttcaacgaacgactcaaattcgtagtagaacctcaaaata 25870407  T
Q  347 agcaaaatccatcg-----attttgattgcaattttacgatttc 385  Q
     |||||||||||||     ||||||||||| |||||||||||||    
T  25870406 ggcaaaatccatcgatttgattttgattgcgattttacgatttc 25870363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 251 - 356
Target Start/End: Original strand, 27676355 - 27676460
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||||| | |||||||||| |||||| || |||||||||| ||| ||||||||| | |||||||||||||   |||||||||||||| | |    
T  27676355 cattgttgtcaaaatcctgacttaaatcgtaaaatgcaggattttgcgactttattcaccttctatgactcaaatccatagcagaatcccaaaataggta 27676454  T
Q  351 aaatcc 356  Q
    ||||||    
T  27676455 aaatcc 27676460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 346
Target Start/End: Original strand, 17796267 - 17796362
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaata 346  Q
    |||||||||||||||||| ||||||||| ||||||| | ||||||| || ||| |||||||||||| ||| |||| |||   ||||||| ||||||    
T  17796267 cattattgtcaaaattccaacttaaatcataaaatctaggattttgtgactttattcaccttcaacaactaaaattcatagcagaatcctaaaata 17796362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 346
Target Start/End: Original strand, 17796376 - 17796471
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaata 346  Q
    |||| ||||||||||||||||||||||| ||||||| | |||||| ||| ||| |||| ||||||| |||||||| |||   ||||||| ||||||    
T  17796376 cattgttgtcaaaattccgacttaaatcataaaatctaggattttacgactttattcatcttcaacaactcaaattcatagcagaatcctaaaata 17796471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 346
Target Start/End: Original strand, 19104707 - 19104802
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaata 346  Q
    |||||||||||||||||| ||||||||| ||||||| | ||||||| || ||| |||||||||||| ||| |||| |||   ||||||| ||||||    
T  19104707 cattattgtcaaaattccaacttaaatcataaaatctaggattttgtgactttattcaccttcaacaactaaaattcatagcagaatcctaaaata 19104802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 346
Target Start/End: Original strand, 19104816 - 19104911
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaata 346  Q
    |||| ||||||||||||||||||||||| ||||||| | |||||| ||| ||| |||| ||||||| |||||||| |||   ||||||| ||||||    
T  19104816 cattgttgtcaaaattccgacttaaatcataaaatctaggattttacgactttattcatcttcaacaactcaaattcatagcagaatcctaaaata 19104911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 329
Target Start/End: Original strand, 28135726 - 28135799
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccat 329  Q
    ||||||||||||||| ||||||| |||||| || |||||||||| ||| ||||| ||||  |||||||||||||    
T  28135726 ttgtcaaaattccgatttaaatcgtaaaattcaggattttgcgactttattcactttcagtgactcaaatccat 28135799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 42696927 - 42696980
Alignment:
Q  332 tagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||||| ||||||| ||||||| |||||||||||||||| |||||||||||||    
T  42696927 tagaatctcaaaataggcaaaattcatcgattttgattgcgattttacgatttc 42696980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 385
Target Start/End: Original strand, 17064508 - 17064543
Alignment:
Q  350 aaaatccatcgattttgattgcaattttacgatttc 385  Q
    |||||||||||||||||||||||||||||| |||||    
T  17064508 aaaatccatcgattttgattgcaattttacaatttc 17064543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 346
Target Start/End: Original strand, 17796485 - 17796580
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaata 346  Q
    |||| ||||||||||| ||| ||||||| ||||||| | |||||| ||| ||| |||||||||||| ||| |||| |||   ||||||| ||||||    
T  17796485 cattgttgtcaaaatttcgaattaaatcataaaatctaggatttttcgactttattcaccttcaacaacttaaattcatagcagaatcctaaaata 17796580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 346
Target Start/End: Original strand, 19104925 - 19105020
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaata 346  Q
    |||| ||||||||||| ||| ||||||| ||||||| | |||||| ||| ||| |||||||||||| ||| |||| |||   ||||||| ||||||    
T  19104925 cattgttgtcaaaatttcgaattaaatcataaaatctaggatttttcgactttattcaccttcaacaacttaaattcatagcagaatcctaaaata 19105020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 6e-41; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 255 - 384
Target Start/End: Complemental strand, 3094379 - 3094250
Alignment:
Q  255 attgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaat 354  Q
    |||||||||||| ||||||||||| |||||| || |||||||| | |||||||||||||||||||||||||||||  |||||||| |||||| |||||||    
T  3094379 attgtcaaaatttcgacttaaatcttaaaattcaggattttgctactttcttcaccttcaacgactcaaatccatagtagaatcctaaaataggcaaaat 3094280  T
Q  355 ccatcgattttgattgcaattttacgattt 384  Q
    ||||||||||||||||| ||||||||||||    
T  3094279 ccatcgattttgattgcgattttacgattt 3094250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 251 - 385
Target Start/End: Original strand, 5922048 - 5922182
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||||| |||||||||||||||||||||| ||||||| || |||||||||||||||||||| | ||||||  |||||||||||||||  ||    
T  5922048 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaacgacttatatccatagtagaatcccaaaatagaca 5922147  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||||||||||||||||||| ||||| |||||||    
T  5922148 aaatccatcgattttgattgcgattttgcgatttc 5922182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 256 - 383
Target Start/End: Original strand, 45403033 - 45403160
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    ||||||||||  |||||||||| |||||||||| |||||||||| |||||| ||||||||||||| ||||||||   |||||| ||||||||||||||||    
T  45403033 ttgtcaaaatcgcgacttaaattctaaaatccaagattttgcgactttcttgaccttcaacgacttaaatccatagaagaatctcaaaataagcaaaatc 45403132  T
Q  356 catcgattttgattgcaattttacgatt 383  Q
    |||||||||||||||| |||||||||||    
T  45403133 catcgattttgattgcgattttacgatt 45403160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 15294674 - 15294803
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||| ||||| ||||||||||||||||||| || |||||||||| ||| |||||||||||||||||||||| ||  |||||| |||||||| ||||||||    
T  15294674 ttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttcaccttcaacgactcaaatcgatagtagaataccaaaataggcaaaatc 15294773  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
    |||||||||||||||| ||||||| |||||    
T  15294774 catcgattttgattgcgattttacaatttc 15294803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 15475043 - 15475172
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||| ||||| ||||||||||||||||||| || |||||||||| ||| |||||||||||||||||||||| ||  |||||| |||||||| ||||||||    
T  15475043 ttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttcaccttcaacgactcaaatcgatagtagaataccaaaataggcaaaatc 15475142  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
    |||||||||||||||| ||||||| |||||    
T  15475143 catcgattttgattgcgattttacaatttc 15475172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 17646997 - 17647126
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    ||||||||||||||||||||||| |||||| || |||||||||| ||||||||||||||||||||||||| |||  ||||||||||||||| | |||||     
T  17646997 ttgtcaaaattccgacttaaatcataaaattcaggattttgcgactttcttcaccttcaacgactcaaattcatagtagaatcccaaaataggaaaaatt 17647096  T
Q  356 catcgattttgattgcaattttacgatttc 385  Q
    |||||||||||||||  |||| ||||||||    
T  17647097 catcgattttgattgttatttaacgatttc 17647126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 385
Target Start/End: Original strand, 11879599 - 11879733
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||||||| ||||||||||||||||| || |||||||| | ||||||||| |||||||||||||||| ||  |||||||| |||||| | |    
T  11879599 cattgttgtcaaaattctgacttaaatcctaaaattcaggattttgcaactttcttcactttcaacgactcaaatctatagtagaatcctaaaataggaa 11879698  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    |||| |||||||||||||||| |||||||||||||    
T  11879699 aaattcatcgattttgattgcgattttacgatttc 11879733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 385
Target Start/End: Original strand, 11897015 - 11897149
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||||||||||| ||||||||||||||||| || |||||||| | ||||||||| |||||||||||||||| ||  |||||||| |||||| | |    
T  11897015 cattgttgtcaaaattctgacttaaatcctaaaattcaggattttgcaactttcttcactttcaacgactcaaatctatagtagaatcctaaaataggaa 11897114  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    |||| |||||||||||||||| |||||||||||||    
T  11897115 aaattcatcgattttgattgcgattttacgatttc 11897149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 256 - 385
Target Start/End: Complemental strand, 19704581 - 19704451
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgatttt-gcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaat 354  Q
    |||||||||| || ||||||||| |||||| || | |||| |||| |||||||||||||||||||||||||||||  |||||| ||| |||| |||||||    
T  19704581 ttgtcaaaatcccaacttaaatcttaaaattcaaggtttttgcgactttcttcaccttcaacgactcaaatccatagtagaattccataataggcaaaat 19704482  T
Q  355 ccatcgattttgattgcaattttacgatttc 385  Q
    |||||||||||||||||||||||||||||||    
T  19704481 ccatcgattttgattgcaattttacgatttc 19704451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 385
Target Start/End: Original strand, 31424162 - 31424296
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    ||||||||||||||| | ||||||||| ||||||| || |||||| ||| ||||||| | |||||||||||||||||||   |||||||||||||| |||    
T  31424162 cattattgtcaaaatcctgacttaaattctaaaattcaggattttacgactttcttccctttcaacgactcaaatccatagaagaatcccaaaataggca 31424261  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    |||||||| |||||||||||| |||||||||||||    
T  31424262 aaatccattgattttgattgcgattttacgatttc 31424296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 251 - 385
Target Start/End: Complemental strand, 27836594 - 27836460
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| ||||||||||||  ||||| |||||||||| || ||||||||| |||| |||||||||||| ||| ||||||||  |||||| | ||||||||||    
T  27836594 cattgttgtcaaaattcaaacttagatcctaaaattcaggattttgcggttttattcaccttcaacaactgaaatccatagtagaattctaaaataagca 27836495  T
Q  351 aaatccatcgattttgattgcaattttacgatttc 385  Q
    |||| |||| ||||||||| ||||||||| |||||    
T  27836494 aaattcatcaattttgattacaattttacaatttc 27836460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 272 - 385
Target Start/End: Complemental strand, 29384425 - 29384313
Alignment:
Q  272 ttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgc 371  Q
    |||||||||||||||   |||||||||| |||||||||||||||||||||||||||||  || ||||| |||||| ||||||| |||||| |||||||||    
T  29384425 ttaaatcctaaaatcttagattttgcgactttcttcaccttcaacgactcaaatccatagtataatccaaaaataggcaaaattcatcga-tttgattgc 29384327  T
Q  372 aattttacgatttc 385  Q
     |||||||||||||    
T  29384326 gattttacgatttc 29384313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 267 - 385
Target Start/End: Complemental strand, 22910316 - 22910198
Alignment:
Q  267 ccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttg 366  Q
    |||||||||||||||||||  | |||||| ||| ||||||||| |||||||||||||||| ||  |||||||  |||||| ||||||||||| |||||||    
T  22910316 ccgacttaaatcctaaaatttaggattttacgactttcttcacattcaacgactcaaatctatagtagaatcttaaaataggcaaaatccattgattttg 22910217  T
Q  367 attgcaattttacgatttc 385  Q
    ||||| |||||| ||||||    
T  22910216 attgcgattttaagatttc 22910198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 291 - 388
Target Start/End: Original strand, 6810861 - 6810957
Alignment:
Q  291 attttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttcata 388  Q
    ||||||||| |||||||||||||||||||||||||||||  ||||||   |||||| ||||||| |||||||||||||| | ||||||||||||||||    
T  6810861 attttgcgactttcttcaccttcaacgactcaaatccatagtagaattttaaaataggcaaaat-catcgattttgattacgattttacgatttcata 6810957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 300 - 385
Target Start/End: Original strand, 23142223 - 23142308
Alignment:
Q  300 ttttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttc 385  Q
    ||||||||| ||||||||||| ||||||||  |||||||| |||||| ||||||| |||||||||||||||| |||||||||||||    
T  23142223 ttttcttcaacttcaacgactgaaatccatagtagaatcctaaaataggcaaaattcatcgattttgattgcgattttacgatttc 23142308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 477178 - 477101
Alignment:
Q  250 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatcc 327  Q
    ||||| |||||||||| | |||||||||||||||||||| ||||||| || ||||||||||||||| |||| ||||||    
T  477178 acattgttgtcaaaatcctgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaatgacttaaatcc 477101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 15761569 - 15761466
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| ||||||||||  |||||||||||||||| |||| ||||||| || ||| || |||||||||||||||||| |||   | |||||||||||| |||    
T  15761569 cattgttgtcaaaatctcgacttaaatcctaaactccaggattttgtgagtttatttaccttcaacgactcaaattcatagcaaaatcccaaaataggca 15761470  T
Q  351 aaat 354  Q
    ||||    
T  15761469 aaat 15761466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 269 - 329
Target Start/End: Complemental strand, 24056680 - 24056620
Alignment:
Q  269 gacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccat 329  Q
    |||||||||||||||||||| |||||||||| ||| ||||| || ||||||||||||||||    
T  24056680 gacttaaatcctaaaatccaggattttgcgactttattcacatttaacgactcaaatccat 24056620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 23136348 - 23136397
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgat 300  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||    
T  23136348 cattattgtcaaaatcccgacttaaatcctaaaattcaggattttgcgat 23136397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 384
Target Start/End: Original strand, 15231744 - 15231856
Alignment:
Q  272 ttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgc 371  Q
    |||||||||||| |  | ||||||||||| ||||||||||||||||||| |||| |||  || ||||  |||||| |||||||||| |   |||||||||    
T  15231744 ttaaatcctaaactttaagattttgcgatgttcttcaccttcaacgactgaaattcatactaaaatcttaaaataggcaaaatccaacatatttgattgc 15231843  T
Q  372 aattttacgattt 384  Q
     ||||||| ||||    
T  15231844 gattttacaattt 15231856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 371
Target Start/End: Complemental strand, 6292467 - 6292352
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||| ||||| |||||||||||| ||||||  | ||||||| || ||| |||| ||| ||||||||||| ||||  || ||| | |||||||| |||||     
T  6292467 ttgttaaaataccgacttaaatcttaaaatttaagattttgtgacttttttcatctttaacgactcaaacccatagtataattctaaaataagaaaaatt 6292368  T
Q  356 catcgattttgattgc 371  Q
    || |||||||||||||    
T  6292367 caacgattttgattgc 6292352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 385
Target Start/End: Complemental strand, 7489414 - 7489279
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcc----caaaata 346  Q
    ||||||||||||||| || | ||||||| |||||| ||  |||||||   |||||||||||||||||||| |||||| |  |||||| |     ||||||    
T  7489414 cattattgtcaaaatccccaattaaatcgtaaaatacagaattttgc---tttcttcaccttcaacgactaaaatccgtagtagaattctaaataaaata 7489318  T
Q  347 agcaaaatccatcgattttgattgcaattttacgatttc 385  Q
      ||||||  |||||||||||||||||||||| ||||||    
T  7489317 gacaaaatttatcgattttgattgcaattttatgatttc 7489279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 385
Target Start/End: Complemental strand, 29384240 - 29384205
Alignment:
Q  350 aaaatccatcgattttgattgcaattttacgatttc 385  Q
    |||||||||||||||||||||| |||||||||||||    
T  29384240 aaaatccatcgattttgattgcgattttacgatttc 29384205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 355
Target Start/End: Original strand, 8582000 - 8582073
Alignment:
Q  282 aaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 355  Q
    |||||||||||||||||  ||| |||||||| || ||||||||| ||| | ||||||| |||||| | ||||||    
T  8582000 aaatccatgattttgcgtctttgttcacctttaatgactcaaattcataacagaatcctaaaatagggaaaatc 8582073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 385
Target Start/End: Complemental strand, 9212295 - 9212251
Alignment:
Q  341 aaaataagcaaaatccatcgattttgattgcaattttacgatttc 385  Q
    |||||| | |||||||||||||||||||||| |||||| ||||||    
T  9212295 aaaataggaaaaatccatcgattttgattgcgattttaagatttc 9212251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 9212348 - 9212296
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgatttt 303  Q
    |||| ||||||||||||  ||||||||||||||||| | | ||||||||||||    
T  9212348 cattgttgtcaaaattctcacttaaatcctaaaatctaggtttttgcgatttt 9212296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 384
Target Start/End: Complemental strand, 26575049 - 26575017
Alignment:
Q  352 aatccatcgattttgattgcaattttacgattt 384  Q
    |||||||||||||||||||| ||||||||||||    
T  26575049 aatccatcgattttgattgctattttacgattt 26575017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 249 - 385
Target Start/End: Complemental strand, 93836 - 93702
Alignment:
Q  249 tacattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataag 348  Q
    |||||| |||||||||| ||||||||||||||||||||||  ||||||  |||||||||||| ||||| ||||||||||||   ||||| | |||||| |    
T  93836 tacattgttgtcaaaatcccgacttaaatcctaaaatccagaattttg--attttcttcaccctcaacaactcaaatccatagaagaattctaaaatagg 93739  T
Q  349 caaaatccatcgattttgattgcaattttacgatttc 385  Q
    | ||||||||||||||||||||| |||||||||||||    
T  93738 cgaaatccatcgattttgattgcgattttacgatttc 93702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Complemental strand, 93633 - 93599
Alignment:
Q  350 aaaatccatcgattttgattgcaattttacgattt 384  Q
    |||||||||||||||||||||| ||||||||||||    
T  93633 aaaatccatcgattttgattgcgattttacgattt 93599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 267 - 385
Target Start/End: Complemental strand, 215 - 96
Alignment:
Q  267 ccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagc-aaaatccatcgatttt 365  Q
    ||||||||||||||||||| || |||||||||| ||||||||| |||||||||||||||||||  || ||| | |||||| || ||||||||||||||||    
T  215 ccgacttaaatcctaaaatgcaggattttgcgactttcttcacgttcaacgactcaaatccatagtaaaattctaaaataggcgaaaatccatcgatttt 116  T
Q  366 gattgcaattttacgatttc 385  Q
    |||||  ||||||| |||||    
T  115 gattgagattttacaatttc 96  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 267 - 385
Target Start/End: Complemental strand, 7569 - 7451
Alignment:
Q  267 ccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttg 366  Q
    ||||||||||| ||||||| || |||||||||| |||||| |||||||||||   ||||||||  |||||||| |||||| ||||||| ||||||||||     
T  7569 ccgacttaaattctaaaattcaggattttgcgactttctttaccttcaacgaacaaaatccatagtagaatcctaaaataggcaaaattcatcgatttta 7470  T
Q  367 attgcaattttacgatttc 385  Q
    ||||| |||||||||||||    
T  7469 attgcgattttacgatttc 7451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 48918 - 48816
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 350  Q
    |||| |||| |||||||||||||||||||||||||| |  ||||||| | ||| |||||||||||||||||||||||||   |||||||||||| |||||    
T  48918 cattgttgtgaaaattccgacttaaatcctaaaatctagaattttgcaactttattcaccttcaacgactcaaatccatatgagaatcccaaaa-aagca 48820  T
Q  351 aaat 354  Q
    ||||    
T  48819 aaat 48816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 354
Target Start/End: Complemental strand, 61472 - 61410
Alignment:
Q  292 ttttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaat 354  Q
    |||||||| ||| ||| |||||||||  ||||||||||   ||||||||||||||||||||||    
T  61472 ttttgcgactttattcgccttcaacggttcaaatccatatgagaatcccaaaataagcaaaat 61410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 37296 - 37218
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccat 329  Q
    |||| |||||||||| |||||||||||  |||||| ||  ||||||| ||||| |||||||||||| ||||||||||||    
T  37296 cattgttgtcaaaatgccgacttaaattttaaaattcagaattttgcaattttattcaccttcaacaactcaaatccat 37218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 9150 - 9072
Alignment:
Q  251 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccat 329  Q
    |||| |||||||||| | || ||||||  ||||||  | ||||||| |||||| |||||||||||||||||||||||||    
T  9150 cattgttgtcaaaatcctgatttaaattttaaaatgtaggattttgtgattttattcaccttcaacgactcaaatccat 9072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 325
Target Start/End: Complemental strand, 35184 - 35115
Alignment:
Q  256 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaat 325  Q
    ||||||||||  |||||||||| ||||||| ||| ||||||  | ||| |||||||| ||||||||||||    
T  35184 ttgtcaaaatctcgacttaaattctaaaattcataattttggaactttattcacctttaacgactcaaat 35115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 384
Target Start/End: Original strand, 18587 - 18619
Alignment:
Q  352 aatccatcgattttgattgcaattttacgattt 384  Q
    |||||||| ||||||||||||||||||||||||    
T  18587 aatccatctattttgattgcaattttacgattt 18619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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