View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7627_high_3 (Length: 267)
Name: NF7627_high_3
Description: NF7627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7627_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 20 - 255
Target Start/End: Original strand, 52730010 - 52730245
Alignment:
| Q |
20 |
caaagaaacatgtataggaagtgacagagaggcgagccggatacttcttaaggacaggtgcttgcaacaccagccaaccagaccatgacaaacaatgtcc |
119 |
Q |
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| T |
52730010 |
caaagaaacatgtataggaagtgacagagaggcgagccggatacttcttaaggacaggtgcttgcaacaccagccaaccagaccatgacaaacaatgtcc |
52730109 |
T |
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| Q |
120 |
tataaggtacaaacatccaagggtccagttttttccttttgcatctcccaatcccagtgatgatgatgagattgagattgagtcactgccaccattaata |
219 |
Q |
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| T |
52730110 |
tataaggtacaaacatccaagggtccagttttttccttttgcatctcccaatcccagtgatgatgatgaaattgagattgactcactgccaccattaata |
52730209 |
T |
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| Q |
220 |
ataatgctgtttagaggtggaactggactgtatatt |
255 |
Q |
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| T |
52730210 |
ataatgctgtttagaggtggaactggactgtatatt |
52730245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 7368828 - 7368972
Alignment:
| Q |
20 |
caaagaaacatgtataggaagtgacagagaggcgagccggatacttcttaaggacaggtgcttgcaacaccagccaaccagaccatgacaaacaatgtcc |
119 |
Q |
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|||||||||||||||||||||||||||| || ||||| || ||||||||||||||||||||||| ||||| |||||| ||||||| |||||||||||||| |
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| T |
7368828 |
caaagaaacatgtataggaagtgacagaaagacgagcagggtacttcttaaggacaggtgcttgaaacacaagccaagcagaccaagacaaacaatgtcc |
7368927 |
T |
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| Q |
120 |
tataaggtacaaacatccaagggtccagttttttccttttgcatc |
164 |
Q |
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| T |
7368928 |
aattagataaagacatccaagtgtccaattttttcccttagcatc |
7368972 |
T |
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