View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7628_low_3 (Length: 514)

Name: NF7628_low_3
Description: NF7628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7628_low_3
NF7628_low_3
[»] chr8 (3 HSPs)
chr8 (346-492)||(12870036-12870182)
chr8 (13-148)||(12869703-12869838)
chr8 (433-492)||(12870156-12870213)
[»] chr7 (5 HSPs)
chr7 (346-492)||(19976621-19976767)
chr7 (13-148)||(41593940-41594075)
chr7 (346-492)||(41593598-41593742)
chr7 (346-421)||(42452165-42452243)
chr7 (350-405)||(21526005-21526063)
[»] chr5 (5 HSPs)
chr5 (346-492)||(14006465-14006611)
chr5 (13-148)||(14006809-14006944)
chr5 (346-492)||(23124188-23124336)
chr5 (26-148)||(23123876-23123990)
chr5 (13-58)||(23123791-23123836)
[»] chr2 (3 HSPs)
chr2 (346-492)||(43522200-43522346)
chr2 (13-148)||(43522544-43522679)
chr2 (433-492)||(43522169-43522226)
[»] chr3 (4 HSPs)
chr3 (346-492)||(22512763-22512898)
chr3 (26-148)||(22512451-22512565)
chr3 (13-58)||(22512366-22512411)
chr3 (346-433)||(39702299-39702387)
[»] chr4 (3 HSPs)
chr4 (346-429)||(32103590-32103675)
chr4 (346-421)||(42884425-42884503)
chr4 (91-135)||(32103271-32103315)
[»] chr1 (1 HSPs)
chr1 (378-433)||(44316633-44316690)


Alignment Details
Target: chr8 (Bit Score: 143; Significance: 7e-75; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 346 - 492
Target Start/End: Original strand, 12870036 - 12870182
Alignment:
Q  346 tacctttccatttggataggaaaaacagagtgaaaagaaaaagggtttttgtttgatcttttttgaatgagagagaagggagtgccggcggtcggaaggg 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12870036 tacctttccatttggataggaaaaacagagtgaaaagaaaaagggtttttgtttgatcttttttgaatgagagagaagggagtgccggcggtcggaaggg 12870135  T
Q  446 gaagaagtgccggcggtcacgcggtcggaaggggaagaagtgtggcg 492  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  12870136 gaagaagtgccggcggtcacgcggtcggaaggggaagaagtgcggcg 12870182  T

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Target: chr8; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 12869703 - 12869838
Alignment:
Q  13 aatatgaacaaaatgtgggtgggccgtgataacattgctactgccaatctgccataacaagagaagagaatcacataacaaatgcaaggttcctcaagat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12869703 aatatgaacaaaatgtgggtgggccgtgataacattgctactgccaatctgccataacaagagaagagaatcacataacaaatgcaaggttgctcaagat 12869802  T
Q  113 gtgcataacaacaaaaatatgaaaacattgcagttt 148  Q
    |||||||||||||||||||||||||||||| |||||    
T  12869803 gtgcataacaacaaaaatatgaaaacattgaagttt 12869838  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 433 - 492
Target Start/End: Original strand, 12870156 - 12870213
Alignment:
Q  433 gcggtcggaaggggaagaagtgccggcggtcacgcggtcggaaggggaagaagtgtggcg 492  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||    
T  12870156 gcggtcggaaggggaagaagtgc-ggcggtcgcgcgg-cggaaggggaagaagtgtggcg 12870213  T

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Target: chr7 (Bit Score: 143; Significance: 7e-75; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 346 - 492
Target Start/End: Complemental strand, 19976767 - 19976621
Alignment:
Q  346 tacctttccatttggataggaaaaacagagtgaaaagaaaaagggtttttgtttgatcttttttgaatgagagagaagggagtgccggcggtcggaaggg 445  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  19976767 tacctttccatttggataggaaaaacagagtgaaaagaaaaagggtttttgtttgatcttttttgaatgagagagaagggagtgccggcggtcggaagag 19976668  T
Q  446 gaagaagtgccggcggtcacgcggtcggaaggggaagaagtgtggcg 492  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  19976667 gaagaagtgccggcggtcacgcggtcggaaggggaagaagtgtggcg 19976621  T

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Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 41594075 - 41593940
Alignment:
Q  13 aatatgaacaaaatgtgggtgggccgtgataacattgctactgccaatctgccataacaagagaagagaatcacataacaaatgcaaggttcctcaagat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41594075 aatatgaacaaaatgtgggtgggccgtgataacattgctactgccaatctgccataacaagagaagagaatcacataacaaatgcaaggttgctcaagat 41593976  T
Q  113 gtgcataacaacaaaaatatgaaaacattgcagttt 148  Q
    ||||||||||||||||||||||||||||||||||||    
T  41593975 gtgcataacaacaaaaatatgaaaacattgcagttt 41593940  T

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Target: chr7; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 346 - 492
Target Start/End: Complemental strand, 41593742 - 41593598
Alignment:
Q  346 tacctttccatttggataggaaaaacagagtgaaaagaaaaagggtttttgtttgatcttttttgaatgagagagaagggagtgccggcggtcggaaggg 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41593742 tacctttccatttggataggaaaaacagagtgaaaagaaaaagggtttttgtttgatcttttttgaatgagagagaagggagtgccggcggtcggaaggg 41593643  T
Q  446 gaagaagtgccggcggtcacgcggtcggaaggggaagaagtgtggcg 492  Q
    ||||||||| |||||||| ||||| ||||||||||||||||||||||    
T  41593642 gaagaagtg-cggcggtcgcgcgg-cggaaggggaagaagtgtggcg 41593598  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 421
Target Start/End: Complemental strand, 42452243 - 42452165
Alignment:
Q  346 tacctttccatttggataggaaaaacagag--tgaa-aagaaaaagggtttttgtttgatcttttttgaatgagagaga 421  Q
    ||||||||||||||||| ||||||||||||  |||| ||||||||||||||||||| ||| || | |||||||||||||    
T  42452243 tacctttccatttggattggaaaaacagagagtgaacaagaaaaagggtttttgttagatattctatgaatgagagaga 42452165  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 405
Target Start/End: Original strand, 21526005 - 21526063
Alignment:
Q  350 tttccatttggataggaaaaacagagtg---aaaagaaaaagggtttttgtttgatctt 405  Q
    ||||||||||||| |||||||||||| |   ||||||||||||| ||||||||||||||    
T  21526005 tttccatttggattggaaaaacagagagtgaaaaagaaaaagggattttgtttgatctt 21526063  T

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Target: chr5 (Bit Score: 139; Significance: 2e-72; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 346 - 492
Target Start/End: Complemental strand, 14006611 - 14006465
Alignment:
Q  346 tacctttccatttggataggaaaaacagagtgaaaagaaaaagggtttttgtttgatcttttttgaatgagagagaagggagtgccggcggtcggaaggg 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14006611 tacctttccatttggataggaaaaacagagtgaaaagaaaaagggtttttgtttgatcttttttgaatgagagagaagggagtgccggcggtcggaaggg 14006512  T
Q  446 gaagaagtgccggcggtcacgcggtcggaaggggaagaagtgtggcg 492  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  14006511 gaagaagtgccggcggtcacgcggtcggaagaggaagaagtgcggcg 14006465  T

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Target: chr5; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 14006944 - 14006809
Alignment:
Q  13 aatatgaacaaaatgtgggtgggccgtgataacattgctactgccaatctgccataacaagagaagagaatcacataacaaatgcaaggttcctcaagat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  14006944 aatatgaacaaaatgtgggtgggccgtgataacattgctactgccaatctgccataacaagagatgagaatcacataacaaatgcaaggttgctcaagat 14006845  T
Q  113 gtgcataacaacaaaaatatgaaaacattgcagttt 148  Q
    ||||||||||||||||||||||||||||||||||||    
T  14006844 gtgcataacaacaaaaatatgaaaacattgcagttt 14006809  T

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Target: chr5; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 346 - 492
Target Start/End: Original strand, 23124188 - 23124336
Alignment:
Q  346 tacctttccatttggataggaaaaacagag--tgaaaagaaaaagggtttttgtttgatcttttttgaatgagagagaagggagtgccggcggtcggaag 443  Q
    ||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||    
T  23124188 tacctttccatttggataggaaaaatagagagtgaaaagaaaaagggtttttgtttgatcttttctgaatgagagagaagggagtgatggcggtcggaag 23124287  T
Q  444 gggaagaagtgccggcggtcacgcggtcggaaggggaagaagtgtggcg 492  Q
    ||||||||||| |||||||  ||||||||||||||||||||||| ||||    
T  23124288 gggaagaagtgtcggcggttgcgcggtcggaaggggaagaagtgcggcg 23124336  T

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Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 26 - 148
Target Start/End: Original strand, 23123876 - 23123990
Alignment:
Q  26 tgtgggtgggccgtgataacattgctactgccaatctgccataacaagagaagagaatcacataacaaatgcaaggttcctcaagatgtgcataacaaca 125  Q
    |||||||||||||||||||||||||||||||        ||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  23123876 tgtgggtgggccgtgataacattgctactgc--------cataacaagagcagagaatcacataacaattgcaaggttgctcaagatgtgcataacaaca 23123967  T
Q  126 aaaatatgaaaacattgcagttt 148  Q
    ||||||||||||||||| |||||    
T  23123968 aaaatatgaaaacattgtagttt 23123990  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 23123791 - 23123836
Alignment:
Q  13 aatatgaacaaaatgtgggtgggccgtgataacattgctactgcca 58  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  23123791 aatatgaacaaaatgtgggtgagccgtgataacattgctactgcca 23123836  T

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Target: chr2 (Bit Score: 135; Significance: 4e-70; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 346 - 492
Target Start/End: Complemental strand, 43522346 - 43522200
Alignment:
Q  346 tacctttccatttggataggaaaaacagagtgaaaagaaaaagggtttttgtttgatcttttttgaatgagagagaagggagtgccggcggtcggaaggg 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43522346 tacctttccatttggataggaaaaacagagtgaaaagaaaaagggtttttgtttgatcttttttgaatgagagagaagggagtgccgacggtcggaaggg 43522247  T
Q  446 gaagaagtgccggcggtcacgcggtcggaaggggaagaagtgtggcg 492  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||    
T  43522246 gaagaaatgccggcggtcacgcggtcggaaggggaagaagtgcggcg 43522200  T

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Target: chr2; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 43522679 - 43522544
Alignment:
Q  13 aatatgaacaaaatgtgggtgggccgtgataacattgctactgccaatctgccataacaagagaagagaatcacataacaaatgcaaggttcctcaagat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  43522679 aatatgaacaaaatgtgggtgggccgtgataacattgctactgccaatctgccatagcaagagaagagaatcacataacaaatgcaaggttgctcaagat 43522580  T
Q  113 gtgcataacaacaaaaatatgaaaacattgcagttt 148  Q
    ||||||||||||||||||||||||||||||||||||    
T  43522579 gtgcataacaacaaaaatatgaaaacattgcagttt 43522544  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 433 - 492
Target Start/End: Complemental strand, 43522226 - 43522169
Alignment:
Q  433 gcggtcggaaggggaagaagtgccggcggtcacgcggtcggaaggggaagaagtgtggcg 492  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||    
T  43522226 gcggtcggaaggggaagaagtgc-ggcggtcgcgcgg-cggaaggggaagaagtgtggcg 43522169  T

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Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 346 - 492
Target Start/End: Original strand, 22512763 - 22512898
Alignment:
Q  346 tacctttccatttggataggaaaaacagag--tgaaaagaaaaagggtttttgtttgatcttttttgaatgagagagaagggagtgccggcggtcggaag 443  Q
    ||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||             | | |||||| |||||||    
T  22512763 tacctttccatttagataggaaaaacagagagtgaaaagaaaaagggtttttgtttgatcttttttgaa-------------attaccggcgttcggaag 22512849  T
Q  444 gggaagaagtgccggcggtcacgcggtcggaaggggaagaagtgtggcg 492  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  22512850 gggaagaagtgtcggcggtcacgcggtcggaaggggaagaagtgcggcg 22512898  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 26 - 148
Target Start/End: Original strand, 22512451 - 22512565
Alignment:
Q  26 tgtgggtgggccgtgataacattgctactgccaatctgccataacaagagaagagaatcacataacaaatgcaaggttcctcaagatgtgcataacaaca 125  Q
    ||||||||| |||||||||||||||||||| ||        |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  22512451 tgtgggtggcccgtgataacattgctactgtca--------taacaagataagagaatcacataacaaatgcaaggttgctcaagatgtgcataactaca 22512542  T
Q  126 aaaatatgaaaacattgcagttt 148  Q
    ||||  |||||| ||| ||||||    
T  22512543 aaaaactgaaaatattccagttt 22512565  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 22512366 - 22512411
Alignment:
Q  13 aatatgaacaaaatgtgggtgggccgtgataacattgctactgcca 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  22512366 aatatgaacaaaatgtgggtgggccgtgataacattgctactgcca 22512411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 433
Target Start/End: Complemental strand, 39702387 - 39702299
Alignment:
Q  346 tacctttccatttggataggaaaaacagag--tgaa-aagaaaaagggtttttgtttgatcttttttgaatgagagagaagggagtgccgg 433  Q
    ||||||||||||| ||| ||||||||| ||  |||| ||||||||||| ||||||||||| || | | ||  |||||||||||||||||||    
T  39702387 tacctttccatttagattggaaaaacaaagactgaacaagaaaaaggggttttgtttgatattctctaaa--agagagaagggagtgccgg 39702299  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 346 - 429
Target Start/End: Original strand, 32103590 - 32103675
Alignment:
Q  346 tacctttccatttggataggaaaaacagag--tgaaaagaaaaagggtttttgtttgatcttttttgaatgagagagaagggagtg 429  Q
    ||||||||||||||||| ||||||||||||  |||||||||||||| ||||| ||||||||| | |||||||||||||||||||||    
T  32103590 tacctttccatttggattggaaaaacagagagtgaaaagaaaaaggttttttctttgatcttctctgaatgagagagaagggagtg 32103675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 421
Target Start/End: Original strand, 42884425 - 42884503
Alignment:
Q  346 tacctttccatttggataggaaaaaca--gagtgaa-aagaaaaagggtttttgtttgatcttttttgaatgagagaga 421  Q
    |||||||| |||||||| |||||||||  ||||||| ||||||||||||||||||||||| || | |||||||||||||    
T  42884425 tacctttctatttggattggaaaaacaaagagtgaacaagaaaaagggtttttgtttgatattctctgaatgagagaga 42884503  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 32103271 - 32103315
Alignment:
Q  91 caaatgcaaggttcctcaagatgtgcataacaacaaaaatatgaa 135  Q
    |||||| | |||| |||||||||||||||||||||||||||||||    
T  32103271 caaatgaacggttgctcaagatgtgcataacaacaaaaatatgaa 32103315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 433
Target Start/End: Original strand, 44316633 - 44316690
Alignment:
Q  378 aaaagaaaaagggtttttgtttgatcttttttgaat--gagagagaagggagtgccgg 433  Q
    |||| ||||||||||||||||||||||| | |||||  ||||||||||||||||||||    
T  44316633 aaaataaaaagggtttttgtttgatcttctctgaatgagagagagaagggagtgccgg 44316690  T

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