View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7628_low_7 (Length: 342)
Name: NF7628_low_7
Description: NF7628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7628_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 327
Target Start/End: Original strand, 31949071 - 31949384
Alignment:
| Q |
17 |
atttgctcactgatgagtgtttgtgtagcgtaagggaagg-----cttccttcttcgtttgcaagagggtttggtctacaagttgcttcgtttgtgttgt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31949071 |
atttgctcactgatgagtgtttgtgtagcgtaagggaagggaaggcttccttcttcgtttgcaagagggtttggtctacaagttgcttcgtttgtgttgt |
31949170 |
T |
|
| Q |
112 |
tacgtgatccgaaccagaatgaggctaaggtagctattgnnnnnnngaagaacgggagggtttattttactgacggttggacatttttaaagagctttaa |
211 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31949171 |
tacgtgatccgaaccagaatgaggttaaggtagctattgaaaaa--gaagaacgggagggtttattttactgatggttggacatttttaaagagctttaa |
31949268 |
T |
|
| Q |
212 |
tgggattttgggtggtgcttggatcacaattatttttgcaaatcgacatctttttctgatggtggtgagaaatctgcatgttgtttaattggtgtatcct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
31949269 |
tgggattttgggtggtgcttggatcacaattatttttgcaaatcgacatctttttctgatggtggtaagaaatctgcatggagtttaattggtgtatcct |
31949368 |
T |
|
| Q |
312 |
tgcttcaatcctccac |
327 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
31949369 |
tgcttcaatcctccac |
31949384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 42091970 - 42091905
Alignment:
| Q |
69 |
tttgcaagagggtttggtctacaagttgcttcgtttgtgttgttacgtgatccgaaccagaatgag |
134 |
Q |
| |
|
|||||||||||||||||| | ||||||| | | |||||| | || |||||||| |||||||||||| |
|
|
| T |
42091970 |
tttgcaagagggtttggtttgcaagttggtccttttgtgatattgcgtgatccaaaccagaatgag |
42091905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 174 - 269
Target Start/End: Complemental strand, 27510752 - 27510657
Alignment:
| Q |
174 |
tattttactgacggttggacatttttaaagagctttaatgggattttgggtggtgcttggatcacaattatttttgcaaatcgacatctttttctg |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||| |||| |||||||||| | ||||||| ||||||||| ||||||||| |
|
|
| T |
27510752 |
tattttactgacggttggacatttttaaagaattttaatgggcttttggctggtacttggatcactgtcatttttgaaaatcgacacctttttctg |
27510657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 269
Target Start/End: Original strand, 39210238 - 39210332
Alignment:
| Q |
174 |
tattttactgacggttggacatttttaaagagctttaatgggattttgggtggtgcttggatcacaattatttttgcaaatcgacatctttttctg |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||| | |||||| |||| |||||||||| | ||||||||||||||||| ||||||||| |
|
|
| T |
39210238 |
tattttactgacggttggacatttttaaaga-attttatgtgcttttggctggtacttggatcactgtcatttttgcaaatcgacacctttttctg |
39210332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 7673984 - 7673926
Alignment:
| Q |
211 |
atgggattttgggtggtgcttggatcacaattatttttgcaaatcgacatctttttctg |
269 |
Q |
| |
|
|||||||||||| |||| ||||| |||||||||||||| |||||||||| |||||||| |
|
|
| T |
7673984 |
atgggattttggctggtacttgggtcacaattattttttcaaatcgacacatttttctg |
7673926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University