View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7628_low_8 (Length: 289)
Name: NF7628_low_8
Description: NF7628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7628_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 11271286 - 11271027
Alignment:
| Q |
16 |
atacctagtcatcagaaggaagatgaaatgagaggtaggggcactgttgatctggaggatgaacttgccggcaaggatcgctacataggatccattgagg |
115 |
Q |
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| T |
11271286 |
atacctagtcatcagaaggaagatgaaatgagaggtagaggcactgtcgatctggaggatgaacttgccggcaaggatcgctacataggatccattgagg |
11271187 |
T |
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| Q |
116 |
gcctcataaggaacaacattcagcaatataagatagatatggctgatgaggtgattaatgccggacgtttcgatcaaagaacaacacacgaagaaaggcg |
215 |
Q |
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| T |
11271186 |
gcctcataaggaacaacattcagcaatataagatagatatggctgatgaggtgattaatgccggacgtttcgatcaaagaacaacacacgaagaaaggcg |
11271087 |
T |
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| Q |
216 |
tttgactttggagacattgttacatgatgatgagaggtatcaagaaactgtccatgatgt |
275 |
Q |
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| T |
11271086 |
tttgactttggagacattgttacatgatgatgagaggtatcaagaaactgtccatgatgt |
11271027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 275
Target Start/End: Original strand, 29521633 - 29521888
Alignment:
| Q |
20 |
ctagtcatcagaaggaagatgaaatgagaggtaggggcactgttgatctggaggatgaacttgccggcaaggatcgctacataggatccattgagggcct |
119 |
Q |
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|||||||||||||||| |||||||||||| | | |||||| ||||| |||||||||| ||||| || |||||||| || ||||||||||||||| |||| |
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| T |
29521633 |
ctagtcatcagaaggaggatgaaatgagaattggaggcactattgatatggaggatgagcttgcaggtaaggatcgatatataggatccattgagagcct |
29521732 |
T |
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| Q |
120 |
cataaggaacaacattcagcaatataagatagatatggctgatgaggtgattaatgccggacgtttcgatcaaagaacaacacacgaagaaaggcgtttg |
219 |
Q |
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| T |
29521733 |
cataaggagcaatattcagcaatataagatagatatggctgatgaggttattaatgctggacgttttgatcaaaggacaacacatgaagagagacgtttg |
29521832 |
T |
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| Q |
220 |
actttggagacattgttacatgatgatgagaggtatcaagaaactgtccatgatgt |
275 |
Q |
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|||||||||||||| || |||||||| || |||| |||||||||||||| ||||| |
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| T |
29521833 |
actttggagacattattgcatgatgaagaaaggtgccaagaaactgtccacgatgt |
29521888 |
T |
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