View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7628_low_9 (Length: 277)

Name: NF7628_low_9
Description: NF7628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7628_low_9
NF7628_low_9
[»] chr4 (2 HSPs)
chr4 (1-270)||(53561106-53561375)
chr4 (138-174)||(42112222-42112258)
[»] chr8 (3 HSPs)
chr8 (11-270)||(4902663-4902922)
chr8 (84-169)||(13959898-13959983)
chr8 (138-174)||(44683335-44683371)
[»] chr7 (1 HSPs)
chr7 (81-174)||(22196065-22196158)
[»] chr3 (2 HSPs)
chr3 (84-169)||(47326722-47326807)
chr3 (136-172)||(28570686-28570722)
[»] chr6 (1 HSPs)
chr6 (81-174)||(20793418-20793511)
[»] chr5 (1 HSPs)
chr5 (118-166)||(10429422-10429470)
[»] chr1 (2 HSPs)
chr1 (54-169)||(4864387-4864502)
chr1 (88-172)||(42749862-42749946)


Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 53561375 - 53561106
Alignment:
Q  1 tttgcaacatcctccacctccatttcgctagaaggcttaagttaacaacattgacatctctcacccccaagcctccattatctttcggttgacacaccac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  53561375 tttgcaacatcctccacctccatttcgctagaaggcttaagttaacaatattgacatccctcacccccaagcctccattatctttcggttgacacaccac 53561276  T
Q  101 cttccacttcgccaaactaattctcctccctccctccacacctccccaaaggaattccctttgaattctcaccaaattccgccggactttagatggcatt 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53561275 cttccacttcaccaaactaattctcctccctccctccacacctccccaaaggaattccctttgaattctcaccaaattccgccggactttagatggcatt 53561176  T
Q  201 ctcataaaggacaagtaataaataggaatgaaattcaacaccgaattgagaagcaccactctaccaccaa 270  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  53561175 ctcataaaggacaagtaataaatagaaatggaattcaacaccgaattgagaagcaccactctaccaccaa 53561106  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 42112222 - 42112258
Alignment:
Q  138 acacctccccaaaggaattccctttgaattctcacca 174  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  42112222 acacctccccataggaattctctttgaattctcacca 42112258  T

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Target: chr8 (Bit Score: 104; Significance: 7e-52; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 11 - 270
Target Start/End: Complemental strand, 4902922 - 4902663
Alignment:
Q  11 cctccacctccatttcgctagaaggcttaagttaacaacattgacatctctcacccccaagcctccattatctttcggttgacacaccaccttccacttc 110  Q
    |||||||| |||||| |||| |||||||||||| || ||  | | ||| ||||||||||| |||||||   |||| ||||||||||||||||||||||||    
T  4902922 cctccaccgccattttgctaaaaggcttaagttcaccaccctaatatccctcacccccaaacctccatcccctttaggttgacacaccaccttccacttc 4902823  T
Q  111 gccaaactaattctcctccctccctccacacctccccaaaggaattccctttgaattctcaccaaattccgccggactttagatggcattctcataaagg 210  Q
     || || |||| | ||| || ||||||||||| ||||||||||| ||||||||||||||||||   |||| ||  |||||||| |||||| ||||||| |    
T  4902822 acccaattaatgcccctaccaccctccacaccaccccaaaggaactccctttgaattctcacctctttcctccacactttagaaggcattttcataaatg 4902723  T
Q  211 acaagtaataaataggaatgaaattcaacaccgaattgagaagcaccactctaccaccaa 270  Q
    |||| ||||||||||||||| | |||||||||||||| || ||||||||||| |||||||    
T  4902722 acaaataataaataggaatggagttcaacaccgaattaagcagcaccactctcccaccaa 4902663  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 13959898 - 13959983
Alignment:
Q  84 ttcggttgacacaccaccttccacttcgccaaactaattctcctccctccctccacacctccccaaaggaattccctttgaattct 169  Q
    ||||||||||||||||   |||| ||  || |||||||| ||||||||||||| |||||||||||||| |  |||||||| |||||    
T  13959898 ttcggttgacacaccaaactccatttaacccaactaattttcctccctccctcaacacctccccaaagaagctccctttggattct 13959983  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 44683371 - 44683335
Alignment:
Q  138 acacctccccaaaggaattccctttgaattctcacca 174  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  44683371 acacctccccataggaattctctttgaattctcacca 44683335  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 174
Target Start/End: Complemental strand, 22196158 - 22196065
Alignment:
Q  81 tctttcggttgacacaccaccttccacttcgccaaactaattctcctccctccctccacacctccccaaaggaattccctttgaattctcacca 174  Q
    ||||||||| ||||||||||||||||  |  || |||||||  ||||||||||||| | ||| |||||||||||||||||||||||||| ||||    
T  22196158 tctttcggtggacacaccaccttccaactaacccaactaatcttcctccctccctctaaaccaccccaaaggaattccctttgaattctaacca 22196065  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 47326807 - 47326722
Alignment:
Q  84 ttcggttgacacaccaccttccacttcgccaaactaattctcctccctccctccacacctccccaaaggaattccctttgaattct 169  Q
    |||||||||||||||||  |||||||| || | |||||| |||| |||||| || |||||||||||||||| ||||||||||||||    
T  47326807 ttcggttgacacaccacactccacttcacccatctaattttcctacctcccgccgcacctccccaaaggaactccctttgaattct 47326722  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 28570722 - 28570686
Alignment:
Q  136 ccacacctccccaaaggaattccctttgaattctcac 172  Q
    |||||||||||||||||||||| ||||||||||||||    
T  28570722 ccacacctccccaaaggaattctctttgaattctcac 28570686  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 81 - 174
Target Start/End: Complemental strand, 20793511 - 20793418
Alignment:
Q  81 tctttcggttgacacaccaccttccacttcgccaaactaattctcctccctccctccacacctccccaaaggaattccctttgaattctcacca 174  Q
    ||||||||||||||||||||||||||  |  || |||||||  ||||||||||||| | ||| |||||||| ||||| ||||||||||| ||||    
T  20793511 tctttcggttgacacaccaccttccaactaacccaactaatcttcctccctccctctaaaccaccccaaagaaattctctttgaattctaacca 20793418  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 10429470 - 10429422
Alignment:
Q  118 taattctcctccctccctccacacctccccaaaggaattccctttgaat 166  Q
    ||||| |||| |||||| ||||||||||||||||||| |||||||||||    
T  10429470 taattttccttcctcccgccacacctccccaaaggaactccctttgaat 10429422  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 169
Target Start/End: Original strand, 4864387 - 4864502
Alignment:
Q  54 acatctctcacccccaagcctccattatctttcggttgacacaccaccttccacttcgccaaactaattctcctccctccctccacacctccccaaagga 153  Q
    |||||||| |||||||  ||| |||| || ||||||||||||||||   |||||||| || || ||||| |||| |||||| | ||||| |||||||| |    
T  4864387 acatctctaacccccagaccttcattttccttcggttgacacaccaagctccacttcacccaattaattttccttcctccccctacaccaccccaaagaa 4864486  T
Q  154 attccctttgaattct 169  Q
    | || ||||| |||||    
T  4864487 actctctttggattct 4864502  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 42749862 - 42749946
Alignment:
Q  88 gttgacacaccaccttccacttcgccaaactaattctcctccctccctccacacctccccaaaggaattccctttgaattctcac 172  Q
    ||||||| |||| ||||||| || || |||||||  |||| || ||  |||| ||||||||||| ||||| ||||||||||||||    
T  42749862 gttgacaaaccaacttccacctcacccaactaatcttcctaccacctcccactcctccccaaagaaattctctttgaattctcac 42749946  T

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