View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7629_high_1 (Length: 265)

Name: NF7629_high_1
Description: NF7629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7629_high_1
NF7629_high_1
[»] chr8 (4 HSPs)
chr8 (13-250)||(19965326-19965564)
chr8 (13-250)||(21027432-21027670)
chr8 (15-123)||(6367935-6368044)
chr8 (213-249)||(6367891-6367927)
[»] chr7 (2 HSPs)
chr7 (13-250)||(29867860-29868098)
chr7 (15-250)||(626386-626622)
[»] chr1 (2 HSPs)
chr1 (13-250)||(20786251-20786489)
chr1 (13-250)||(29469572-29469810)
[»] chr3 (1 HSPs)
chr3 (60-250)||(33721751-33721942)
[»] chr5 (1 HSPs)
chr5 (16-250)||(28698965-28699188)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 19965326 - 19965564
Alignment:
Q  13 acctgtgtttgatggtgaaaactatcatatatgaccagcaagaatgtaggcgtatttagaggcaaatgacctctgg-aagctgttgaggaggactacgaa 111  Q
    |||||||||||||||||||||||||||||||||  ||||||||||  |||| || ||||||||||||||||||||| |||||||||||||||||||||||    
T  19965326 acctgtgtttgatggtgaaaactatcatatatgggcagcaagaatagaggcatacttagaggcaaatgacctctgggaagctgttgaggaggactacgaa 19965425  T
Q  112 gttcttcctttgtcagacaatccaacaatggctcggataaaaaatcacaaggaatggaaagtaagaaagtcaaaagcaagagcttctttgtttgttgctg 211  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||  |||||||||||||||||||||| ||||||||| |||||    
T  19965426 gttcttcctttgtcagacaatccaacaatggctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagagctactttgtttgctgctg 19965525  T
Q  212 tctcagaagaaatcttaaccaaaattatgaccatcaaat 250  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  19965526 tctcagaagaaatcttcaccagaattatgaccatcaaat 19965564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 21027670 - 21027432
Alignment:
Q  13 acctgtgtttgatggtgaaaactatcatatatgaccagcaagaatgtaggcgtatttagaggcaaatgacctctgg-aagctgttgaggaggactacgaa 111  Q
    |||||||||||||||||||||||||||||||||  ||||||||||  |||| || ||||||||||||||||||||| |||||||||||||||||||||||    
T  21027670 acctgtgtttgatggtgaaaactatcatatatgggcagcaagaatagaggcatacttagaggcaaatgacctctgggaagctgttgaggaggactacgaa 21027571  T
Q  112 gttcttcctttgtcagacaatccaacaatggctcggataaaaaatcacaaggaatggaaagtaagaaagtcaaaagcaagagcttctttgtttgttgctg 211  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||  |||||||||||||||||||||| ||||||||| |||||    
T  21027570 gttcttcctttgtcagacaatccaacaatggctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagagctactttgtttgctgctg 21027471  T
Q  212 tctcagaagaaatcttaaccaaaattatgaccatcaaat 250  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  21027470 tctcagaagaaatcttcaccagaattatgaccatcaaat 21027432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 6368044 - 6367935
Alignment:
Q  15 ctgtgtttgatggtgaaaactatcatatatgaccagcaagaatgtaggcgtatttagaggcaaatgacctctg-gaagctgttgaggaggactacgaagt 113  Q
    |||||||||||||||||||||||||||||||  ||||| ||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  6368044 ctgtgtttgatggtgaaaactatcatatatgggcagcaggaatggaggcgtatttagaggcaaatgacctctgcgaagctcttgaggaggactacgaagt 6367945  T
Q  114 tcttcctttg 123  Q
    ||||||||||    
T  6367944 tcttcctttg 6367935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 6367927 - 6367891
Alignment:
Q  213 ctcagaagaaatcttaaccaaaattatgaccatcaaa 249  Q
    |||||||||||||||||||||||||||||||||||||    
T  6367927 ctcagaagaaatcttaaccaaaattatgaccatcaaa 6367891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 29867860 - 29868098
Alignment:
Q  13 acctgtgtttgatggtgaaaactatcatatatgaccagcaagaatgtaggcgtatttagaggcaaatgacctctgg-aagctgttgaggaggactacgaa 111  Q
    |||||||||||||||||||||||||||||||||  ||||||||||  |||| || ||||||||||||||||||||| |||||||||||||||||||||||    
T  29867860 acctgtgtttgatggtgaaaactatcatatatgggcagcaagaatagaggcatacttagaggcaaatgacctctgggaagctgttgaggaggactacgaa 29867959  T
Q  112 gttcttcctttgtcagacaatccaacaatggctcggataaaaaatcacaaggaatggaaagtaagaaagtcaaaagcaagagcttctttgtttgttgctg 211  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||  |||||||||||||||||||||| ||||||||| |||||    
T  29867960 gttcttcctttgtcagacaatccaacaatggctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagagctactttgtttgctgctg 29868059  T
Q  212 tctcagaagaaatcttaaccaaaattatgaccatcaaat 250  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  29868060 tctcagaagaaatcttcaccagaattatgaccatcaaat 29868098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 626386 - 626622
Alignment:
Q  15 ctgtgtttgatggtgaaaactatcatatatgaccagcaagaatgtaggcgtatttagaggcaaatgacctctgg-aagctgttgaggaggactacgaagt 113  Q
    |||||||||||||||||||||||||||||||  ||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  626386 ctgtgtttgatggtgaaaactatcatatatgggcagcaaggatggaggcgtatttagaggcaaatgacctctgggaagctgttgaggaggactacgaagt 626485  T
Q  114 tcttcctttgtcagacaatccaacaatggctcggataaaaaatcacaaggaatggaaagtaagaaagtcaaaagcaagagcttctttgtttgttgctgtc 213  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||  |||||||||||||||||| ||| ||||||||| |  ||||    
T  626486 tcttcctttgtcagacaatccaacaatggctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctattgtc 626585  T
Q  214 tcagaagaaatcttaaccaaaattatgaccatcaaat 250  Q
    |||||||||||||| |||| |||||||| ||||||||    
T  626586 tcagaagaaatcttcaccagaattatgatcatcaaat 626622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 20786489 - 20786251
Alignment:
Q  13 acctgtgtttgatggtgaaaactatcatatatgaccagcaagaatgtaggcgtatttagaggcaaatgacctctgg-aagctgttgaggaggactacgaa 111  Q
    |||||||||||||||||||||||||||||||||  ||||||||||  |||| || ||||||||||||||||||||| |||||||||||||||||||||||    
T  20786489 acctgtgtttgatggtgaaaactatcatatatgggcagcaagaatagaggcatacttagaggcaaatgacctctgggaagctgttgaggaggactacgaa 20786390  T
Q  112 gttcttcctttgtcagacaatccaacaatggctcggataaaaaatcacaaggaatggaaagtaagaaagtcaaaagcaagagcttctttgtttgttgctg 211  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||  |||||||||||||||||||||| ||||||||| |||||    
T  20786389 gttcttcctttgtcagacaatccaacaatggctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagagctactttgtttgctgctg 20786290  T
Q  212 tctcagaagaaatcttaaccaaaattatgaccatcaaat 250  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  20786289 tctcagaagaaatcttcaccagaattatgaccatcaaat 20786251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 29469572 - 29469810
Alignment:
Q  13 acctgtgtttgatggtgaaaactatcatatatgaccagcaagaatgtaggcgtatttagaggcaaatgacctctgg-aagctgttgaggaggactacgaa 111  Q
    |||||||||||||||||||||||||||||||||  ||||||||||  |||| || ||||||||||||||||||||| |||||||||||||||||||||||    
T  29469572 acctgtgtttgatggtgaaaactatcatatatgggcagcaagaatagaggcatacttagaggcaaatgacctctgggaagctgttgaggaggactacgaa 29469671  T
Q  112 gttcttcctttgtcagacaatccaacaatggctcggataaaaaatcacaaggaatggaaagtaagaaagtcaaaagcaagagcttctttgtttgttgctg 211  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||  |||||||||||||||||||||| ||||||||| || ||    
T  29469672 gttcttcctttgtcagacaatccaacaatggctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagagctactttgtttgctgttg 29469771  T
Q  212 tctcagaagaaatcttaaccaaaattatgaccatcaaat 250  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  29469772 tctcagaagaaatcttcaccagaattatgaccatcaaat 29469810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 60 - 250
Target Start/End: Complemental strand, 33721942 - 33721751
Alignment:
Q  60 aggcgtatttagaggcaaatgacctctgg-aagctgttgaggaggactacgaagttcttcctttgtcagacaatccaacaatggctcggataaaaaatca 158  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  33721942 aggcgtatttagaggcaaatgacctctgggaagctattgaggaggactacgaagttcttcctttgtcagacaatccaacaatggctcagataacaaatca 33721843  T
Q  159 caaggaatggaaagtaagaaagtcaaaagcaagagcttctttgtttgttgctgtctcagaagaaatcttaaccaaaattatgaccatcaaat 250  Q
    ||||||| |||||  |||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||| |||||||||||||||||    
T  33721842 caaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtctcagaagaaatcttcaccagaattatgaccatcaaat 33721751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 28699188 - 28698965
Alignment:
Q  16 tgtgtttgatggtgaaaactatcatatatgaccagcaagaatgtaggcgtatttagaggcaaatgacctctgg-aagctgttgaggaggactacgaagtt 114  Q
    ||||||||||||||||||||||||||||||  ||||||||||            ||||||||||||||| ||| |||||||||||||||||||| |||||    
T  28699188 tgtgtttgatggtgaaaactatcatatatgggcagcaagaat------------agaggcaaatgacctttgggaagctgttgaggaggactacaaagtt 28699101  T
Q  115 cttcctttgtcagacaatccaacaatggctcggataaaaaatcacaaggaatggaaagtaagaaagtcaaaagcaagagcttctttgtttgttgctgtct 214  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||  |||||||||||||||||| ||| ||||||||| ||||||||    
T  28699100 cttcctttgtcagacaatccaacaatggctcagataaataatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtct 28699001  T
Q  215 cagaagaaatcttaaccaaaattatgaccatcaaat 250  Q
    ||||||||||||| |||| |||||| ||||||||||    
T  28699000 cagaagaaatcttcaccataattataaccatcaaat 28698965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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