View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7630_high_4 (Length: 420)
Name: NF7630_high_4
Description: NF7630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7630_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 31 - 306
Target Start/End: Original strand, 9425979 - 9426255
Alignment:
| Q |
31 |
gctgtccttattcttagagactgagttaggtcattgacatttcattccata---gaattgacgccattaagnnnnnnnnnnnnnnnngaatcccttaaga |
127 |
Q |
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| T |
9425979 |
gctgtccttattctaaga--ctgagttaggtcattgacatttcattccataccagaatttacgccattaagaaaaaacataaaaaaagaatcccttaaaa |
9426076 |
T |
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| Q |
128 |
aaaacacgttattaaaatggaaagtccatagtctttgaaaaactttattttaagccattagaatgtcttcaatacgggaagtccacacagatttattatt |
227 |
Q |
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| T |
9426077 |
aaaacacgttattaaaatggaaagtccatagtctttgaaaaactttattttaagccattagaatgtcttcaatatgggaagtccacacagatttattatt |
9426176 |
T |
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| Q |
228 |
attttttactatccttttctgacatcattatgtttggaagagtttctcacattacacaccatttttgtatatggtctat |
306 |
Q |
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| T |
9426177 |
attttttactatccttttctgacatcattatgtttggaagagtttctcacattacacaccatttttgtatatggtctat |
9426255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 115 - 306
Target Start/End: Complemental strand, 13598610 - 13598420
Alignment:
| Q |
115 |
gaatcccttaagaaaaacacgttattaaaatggaaagtccatagtctttgaaaaactttattttaagccattagaatgtcttcaatacgggaagtccaca |
214 |
Q |
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| T |
13598610 |
gaatcccttaa-aaaaacacgttattaaaatggaaagtccatagtctttgaaaaactttatttcaagccattagaatgtcttcaatatgggaagtccaca |
13598512 |
T |
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| Q |
215 |
cagatttattattattttttactatccttttctgacatcattatgtttggaagagtttctcacattacacaccatttttgtatatggtctat |
306 |
Q |
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| T |
13598511 |
catatttattattattttttactatccttttctgacatcattatgtttggaagagtttctcacattacacaccatttttgtatatggtctat |
13598420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 362 - 401
Target Start/End: Original strand, 9426307 - 9426346
Alignment:
| Q |
362 |
gaattcactacagaattgtacactatagtatattggtgtg |
401 |
Q |
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| T |
9426307 |
gaattcactacagaattgtacactatagtatattggtgtg |
9426346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 362 - 401
Target Start/End: Complemental strand, 13598360 - 13598321
Alignment:
| Q |
362 |
gaattcactacagaattgtacactatagtatattggtgtg |
401 |
Q |
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| T |
13598360 |
gaattcactaaagaattgtacactatagtatattggtgtg |
13598321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 242
Target Start/End: Complemental strand, 49824746 - 49824631
Alignment:
| Q |
127 |
aaaaacacgttattaaaatggaaagtccatagtctttgaaaaactttattttaagccattagaatgtcttcaatacgggaagtccacacagatttattat |
226 |
Q |
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||||||| |||||| || ||||||||| || | | ||||| |||||||||| |||||||||||||||||||| | | |||||||| | |||||||||| |
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| T |
49824746 |
aaaaacatgttattgaactggaaagtctattctgtctgaaatactttattttcagccattagaatgtcttcaacatgtgaagtccagaaggatttattat |
49824647 |
T |
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| Q |
227 |
tattttttactatcct |
242 |
Q |
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||| | || ||||||| |
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| T |
49824646 |
tatatcttgctatcct |
49824631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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