View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7630_low_10 (Length: 310)
Name: NF7630_low_10
Description: NF7630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7630_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 29359120 - 29358829
Alignment:
| Q |
19 |
aacggcttggccaataaccaactacatttccagatccatattcaagccaccaatttgcaacaaatggatccttcacacnnnnnnnnnnnnnn---gtata |
115 |
Q |
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| T |
29359120 |
aacggcttggccaataaccaactacatttccagatccatattcaagccaccaatttgcaacaaatggatccttcacacaaaaagaaaaaaaaaaagtaaa |
29359021 |
T |
|
| Q |
116 |
tcttcaatgacaggctcttgttatgtgacaaagtaaaattactcaaacatagacatataatcataagagaaatatttttgtctaacaattttagggacta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
29359020 |
tcttcaatgacaggctcttgttatgtgacaaagtaaaattactcaaacatagacatataatcataagagaaatattttagtctaacaattttagagacta |
29358921 |
T |
|
| Q |
216 |
aaatgataaatagttccttaatattttttacacaaaacaaaacaattttaatatttttaatctagtagccaaaatattgacttatctctgct |
307 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
29358920 |
aaatgataaatagttcctttatattttttacacaaaacaaaacaattttaatatttttaacctagtagccaaaatattgacttatctttgct |
29358829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 29211282 - 29211329
Alignment:
| Q |
26 |
tggccaataaccaactacatttccagatccatattcaagccaccaatt |
73 |
Q |
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||||||||| |||| || ||||||||||||||||||||||||||||| |
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| T |
29211282 |
tggccaatatccaattaagtttccagatccatattcaagccaccaatt |
29211329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 29312607 - 29312560
Alignment:
| Q |
26 |
tggccaataaccaactacatttccagatccatattcaagccaccaatt |
73 |
Q |
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||||||||| |||| | |||||||||||||||||||||||||||||| |
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| T |
29312607 |
tggccaatagccaagaaaatttccagatccatattcaagccaccaatt |
29312560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 30916536 - 30916583
Alignment:
| Q |
26 |
tggccaataaccaactacatttccagatccatattcaagccaccaatt |
73 |
Q |
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||||||||| |||| || ||||||||||||||||||||||||||||| |
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| T |
30916536 |
tggccaatatccaattatgtttccagatccatattcaagccaccaatt |
30916583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 30925669 - 30925716
Alignment:
| Q |
26 |
tggccaataaccaactacatttccagatccatattcaagccaccaatt |
73 |
Q |
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||||||||| |||| || ||||||||||||||||||||||||||||| |
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| T |
30925669 |
tggccaatatccaattatgtttccagatccatattcaagccaccaatt |
30925716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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