View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7630_low_12 (Length: 251)
Name: NF7630_low_12
Description: NF7630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7630_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 55955979 - 55956205
Alignment:
| Q |
18 |
atgaataggtttaaatgaagggaacagatcagcagggtcaaacccacttgccatttccactgtttgcttgagcaaactcaaaagttcatcttcatattta |
117 |
Q |
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| T |
55955979 |
atgaataggtttaaatgaagggaacagatcagcagggtcaaacccacttgccatttccactgtttgcttgagcaaactcaaaagttcatcttcatattta |
55956078 |
T |
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| Q |
118 |
gattttttaccaaatgctgctcttgaaacaaaggtacttaccaaagaaaaagctgttttagtaacattaagtggtagtgaaagtgaaacttgaattgatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55956079 |
gattttttaccaaatgctgctcttgaaacaaaggtacttaccaaagaaaaagctgttttagtaacattaagtggtagtgaaagtgaaacttgaattgatt |
55956178 |
T |
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| Q |
218 |
gtatgagcttttgcacctcttcttctc |
244 |
Q |
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| T |
55956179 |
gtatgagcttttgcacctcttcttctc |
55956205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 55959422 - 55959649
Alignment:
| Q |
17 |
aatgaataggtttaaatgaagggaacagatcagcagggtcaaacccacttgccatttccactgtttgcttgagcaaactcaaaagttcatcttcatattt |
116 |
Q |
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| T |
55959422 |
aatgaatagctttgaatgaagcgaacaaatcaacaacatcgaaaccactcgccatttccactgattccttgagcaaacatagaagttcatcttcatattt |
55959521 |
T |
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| Q |
117 |
agattttttaccaaatgctgctcttgaaacaaaggtacttaccaaagaaaaagctgttttagtaacattaagtggtagtgaaagtgaaacttgaattgat |
216 |
Q |
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| T |
55959522 |
agatttttaaccaaacgccgctcttgaaacaaaggtacttaccaaagagaaagctattttagtaacatcaagtggtagtgaaagtgaaccttgaatggat |
55959621 |
T |
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| Q |
217 |
tgtatgagcttttgcacctcttcttctc |
244 |
Q |
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| T |
55959622 |
tgtataagcttttctacctcatcttctc |
55959649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 12426305 - 12426453
Alignment:
| Q |
17 |
aatgaataggtttaaatgaagggaacagatcagcagggtcaaacccacttgccatttccactgtttgcttgagcaaactcaaaagttcatcttcatattt |
116 |
Q |
| |
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|||||||||||||||||||||| |||| ||||||| ||||| |||||||||||||||| || |||||||||||||| ||| || ||||||||||| || |
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| T |
12426305 |
aatgaataggtttaaatgaaggaaacaaatcagcaacatcaaaaccacttgccatttccattgcttgcttgagcaaacacaacagatcatcttcatactt |
12426404 |
T |
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| Q |
117 |
agattttttaccaaatgctgctcttgaaacaaaggtacttaccaaagaa |
165 |
Q |
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| T |
12426405 |
agattttttaccaaaagttgcccttgaaacaaaggaacttaccaaagaa |
12426453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 12266515 - 12266367
Alignment:
| Q |
17 |
aatgaataggtttaaatgaagggaacagatcagcagggtcaaacccacttgccatttccactgtttgcttgagcaaactcaaaagttcatcttcatattt |
116 |
Q |
| |
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||||||||||||||||||||||||||| ||||| | ||||| | || ||||||||| || |||||||||||||| |||||||||||||||||| || |
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| T |
12266515 |
aatgaataggtttaaatgaagggaacacatcagaaacatcaaaataatttaccatttccattgattgcttgagcaaacacaaaagttcatcttcatactt |
12266416 |
T |
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| Q |
117 |
agattttttaccaaatgctgctcttgaaacaaaggtacttaccaaagaa |
165 |
Q |
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||||||||||||||| | ||| ||||||| ||||| ||||||||||||| |
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| T |
12266415 |
agattttttaccaaaagttgcccttgaaataaaggaacttaccaaagaa |
12266367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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