View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7630_low_14 (Length: 238)
Name: NF7630_low_14
Description: NF7630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7630_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 16086583 - 16086356
Alignment:
| Q |
1 |
tcactgcagtgctatagacaacattcgataacgctttgtactaaatcatgcattataaaacaatagcggtttgtacaaatttgtactctgcattatgaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16086583 |
tcactgcagtgctatagacaacattcgataacactttgtactaaatcatgcattataaaacaatagtggtttgtacaaatttgtactctgcattatgaca |
16086484 |
T |
|
| Q |
101 |
ctatagccgctttttgacaacattaattcactttaccataatagggtgatatattggtgaagctgaactttgaagttaaaagtaaagatatcaaagttta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16086483 |
ctatagccgctttttgacaacattaattcactttaccataatagggtgatatattggtgaagctgaactttgaagttaaaagtaaagatgtcaaagttta |
16086384 |
T |
|
| Q |
201 |
tac----gtaccttcatgaatggtattg |
224 |
Q |
| |
|
||| ||||||||||||||||||||| |
|
|
| T |
16086383 |
tacgtacgtaccttcatgaatggtattg |
16086356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 16080991 - 16080939
Alignment:
| Q |
177 |
taaaagtaaagatatcaaagtttatacgtaccttcatgaatggtattgatgat |
229 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| ||||||||| ||| |||| |
|
|
| T |
16080991 |
taaaattaaagatatcaaagtttatatgtacctttatgaatggtgttgctgat |
16080939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University