View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7630_low_2 (Length: 465)
Name: NF7630_low_2
Description: NF7630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7630_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 243 - 435
Target Start/End: Original strand, 32941335 - 32941535
Alignment:
| Q |
243 |
attacaaaaaatatatatattttaacaagatgaaattacaactttcaaacatggcgtcattaggccgctcaacaacctaaaactcaactcagatgca-tt |
341 |
Q |
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| T |
32941335 |
attacaaaaaatatatatattttaacaagatgaaattacaactttcaaacatggcgtcattaggccgctcaacaacctaaaactcaactcagatgcattt |
32941434 |
T |
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| Q |
342 |
ttttaggcaaaaaccaaccatgtgcaatcaatttcattattcaactaccaccaat--------tcgaaaattttaaacgtgaaattattcgtcctcttca |
433 |
Q |
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| T |
32941435 |
ttttaggc-aaaaccaaccatgtgcaatcaatttcattattcaactaccaccaattctccaactccaaaattttaaacgtgaaattattcgtcctctcca |
32941533 |
T |
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| Q |
434 |
ag |
435 |
Q |
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|| |
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| T |
32941534 |
ag |
32941535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 32941166 - 32941278
Alignment:
| Q |
24 |
ctgacgtctttattgctaattactaaaccatctaatagctcacctcgttctttcctatttgtgaacatcacctacaataatccacgtagttaaagtcata |
123 |
Q |
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| T |
32941166 |
ctgacgtctttattgctaattactaaaccatctaatagctcacctcgttctttcctatttgtgaacatcacctacaataatccacgtagttaaagtcata |
32941265 |
T |
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| Q |
124 |
tatacaattcacc |
136 |
Q |
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||||||||||||| |
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| T |
32941266 |
tatacaattcacc |
32941278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 198
Target Start/End: Original strand, 32941293 - 32941328
Alignment:
| Q |
163 |
aagcatacgtaatagacaaaactacttttttatgag |
198 |
Q |
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| T |
32941293 |
aagcatacgtaatagacaaaactacttttttatgag |
32941328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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