View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7630_low_6 (Length: 375)
Name: NF7630_low_6
Description: NF7630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7630_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 16086592 - 16086751
Alignment:
| Q |
1 |
ttgaactaattttcattttctgcaatctgcaactgataatgctaaaatggatattgctgcagttttgttttaccgcaattttaatcatttacaagatgga |
100 |
Q |
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| T |
16086592 |
ttgaacaaattttcattttctgcaatctgcaactgataatgctaaagtggatattgctgcagttttgttttaccgaaattttaatcatttacaagatgga |
16086691 |
T |
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| Q |
101 |
gtaaccaatttcagtttttgcatattccttgtacttcatagactgtgatgtaatttctgt |
160 |
Q |
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| T |
16086692 |
gtaaccaatttcagtttttggatattccttgtacttcatagactgtgatgtaatttctgt |
16086751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 176 - 368
Target Start/End: Original strand, 16086895 - 16087099
Alignment:
| Q |
176 |
tttgggctagttcagcatatttgactgtagattcctttatgactttgctcaaaccataattaattgttggattgt------------gaatatgtaggag |
263 |
Q |
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| T |
16086895 |
tttgggctagttcagcatatttgactgtagattcctttatgactttgctcaaaccataaataattgttggtttcttcattttttttggtatatgtaggag |
16086994 |
T |
|
| Q |
264 |
ttgatacaagctttgaagattcaattgttgaatttcatatcaaatcttaaacctcacattgattttctaacaaccaaaattagtgaggtctctctgatgt |
363 |
Q |
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| T |
16086995 |
ttgatacaagctttgaagattcaattgttgaatttcatatcaaatcttaaacctcacattgattttctaacaaccaaaattagtgaggtctctcttatgt |
16087094 |
T |
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| Q |
364 |
ccatc |
368 |
Q |
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| T |
16087095 |
ccatc |
16087099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 251 - 368
Target Start/End: Original strand, 16439675 - 16439792
Alignment:
| Q |
251 |
gaatatgtaggagttgatacaagctttgaagattcaattgttgaatttcatatcaaatcttaaacctcacattgattttctaacaaccaaaattagtgag |
350 |
Q |
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| T |
16439675 |
gaatatgtaggagtggttacaagctttgaagattcagttgttggatttcatattaaatctgaaacttcacgttgaatttttaactattaaaattagtgag |
16439774 |
T |
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| Q |
351 |
gtctctctgatgtccatc |
368 |
Q |
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| T |
16439775 |
gtctctcttatgtccatc |
16439792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 1830023 - 1830118
Alignment:
| Q |
38 |
aatgctaaaatggatattgctgcagttttgttttaccgcaattttaatcatttacaagatggagtaaccaatttcagtttttgcatattccttgta |
133 |
Q |
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| T |
1830023 |
aatgttaaagtggatattgcaatagttttgttttactgtaattttaatcatttacaagatgtagcaaccaatttcagtttttttatattccttgta |
1830118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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