View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7630_low_7 (Length: 360)
Name: NF7630_low_7
Description: NF7630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7630_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 5434255 - 5434595
Alignment:
| Q |
1 |
gataaccactcaccataacttgagcataatttttcctcctactccactgattcatgaaaattgtagtatattgcattccacttttgtggtgaatattgat |
100 |
Q |
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| T |
5434255 |
gataacctctcaccataacttgagcataatttttcctcctactccaccgattcatgaaaattgtagtatattgcattccaattttgtgttgaatattact |
5434354 |
T |
|
| Q |
101 |
tggttcagaaaaggatgaatccaattaggtagtttggtgttgttgcaagggtcaagatgtacatattgctaatttaattccattccacgccactgccatg |
200 |
Q |
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| T |
5434355 |
tggttcaaaaaaggatgagtccaattaggtagtttggtgttgttgcaagggtcaagatatacatattgctaatttaattccattccacgccattgccatg |
5434454 |
T |
|
| Q |
201 |
catcatctactaattaattaagccttcgtcttcattttttatttcatgtcaaagcttatttaagcaattaagagaataattaattggacagagagagaag |
300 |
Q |
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| T |
5434455 |
catcatctactaattaattaagccttcgtcttcattttttatttcatgtcaaagcttatttaagcaattcagagaataattaattggacggagagagaag |
5434554 |
T |
|
| Q |
301 |
aatcaataaaatagggagaaagaaccatactcagatcacgg |
341 |
Q |
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| T |
5434555 |
aatcaataaaatagggaaaaagaaccatactcggatgacgg |
5434595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 41965620 - 41965270
Alignment:
| Q |
1 |
gataaccactcaccataacttgagcataatttttcctcctactccactgattcatgaaaattgtagtatattgcattccacttttgtggtgaatattgat |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||| | |
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| T |
41965620 |
gataacctctcaccataacttgagcataatttttcctcctactccaccgattcatgaaaattgtagtatattgcattccaattttgtattgaatattgct |
41965521 |
T |
|
| Q |
101 |
tggttcagaaaaggatgaatccaattaggtagtttggtgttgttgcaagggtcaagatgtacatattgctaatttaattccattccacgccactgccatg |
200 |
Q |
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| T |
41965520 |
tggttcagaaaaggatgaatccaattaggtagtttggtgttgttgcaaggatcaagatatacatattgctaatttaattccattccacgccactgccatg |
41965421 |
T |
|
| Q |
201 |
catcatctactaattaattaagccttcgtcttcattttttatttcatgtcaaagcttatttaagcaattaagagaataattaattggacagagagagaag |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
41965420 |
cattatctactaattaattaagccttcgtcttcattttttatttcatgccaaagtttatttaagcaattaagagaataattaattggacggagagaggag |
41965321 |
T |
|
| Q |
301 |
aatcaataaaatagggagaaagaaccatactcagatcacggccacaggttc |
351 |
Q |
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| T |
41965320 |
aatcaatggaatagggagaaagaatcatactccgatgacggcgagaggttc |
41965270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 185 - 332
Target Start/End: Original strand, 53778085 - 53778232
Alignment:
| Q |
185 |
ccacgccactgccatgcatcatctactaattaattaagccttcgtcttcattttttatttcatgtcaaagcttatttaagcaattaagagaataattaat |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
53778085 |
ccacgccactgccatgcatcatctactaattaattaagccttcgtcttcattttttatttcatgccaaagcttatttaagcaattaagagaataattaat |
53778184 |
T |
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| Q |
285 |
tggacagagagagaagaatcaataaaatagggagaaagaaccatactc |
332 |
Q |
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| T |
53778185 |
tggacagagagagaaaaatcaatggaatagggagaaagaaccatactc |
53778232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 53778038 - 53778084
Alignment:
| Q |
1 |
gataaccactcaccataacttgagcataatttttcctcctactccac |
47 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
53778038 |
gataacctctcaccataacttgagcataatttttcctcctactccac |
53778084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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