View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7630_low_8 (Length: 353)

Name: NF7630_low_8
Description: NF7630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7630_low_8
NF7630_low_8
[»] chr1 (18 HSPs)
chr1 (138-332)||(24416082-24416276)
chr1 (11-114)||(51121905-51122008)
chr1 (198-334)||(24367529-24367665)
chr1 (25-114)||(51123557-51123646)
chr1 (138-322)||(24310520-24310704)
chr1 (194-255)||(24340771-24340832)
chr1 (194-255)||(24353136-24353197)
chr1 (203-255)||(24323139-24323191)
chr1 (25-114)||(35478087-35478176)
chr1 (292-322)||(24323228-24323258)
chr1 (292-334)||(24340872-24340914)
chr1 (292-334)||(24353237-24353279)
chr1 (85-114)||(5784929-5784958)
chr1 (85-114)||(11152545-11152574)
chr1 (85-114)||(31803762-31803791)
chr1 (85-114)||(44159356-44159385)
chr1 (85-114)||(45379085-45379114)
chr1 (11-119)||(42134477-42134585)
[»] chr2 (11 HSPs)
chr2 (11-111)||(17946097-17946197)
chr2 (11-120)||(7744037-7744146)
chr2 (25-117)||(17948929-17949021)
chr2 (25-114)||(7745274-7745363)
chr2 (25-114)||(41144-41233)
chr2 (25-116)||(11021531-11021622)
chr2 (85-117)||(33190-33222)
chr2 (85-116)||(42880873-42880904)
chr2 (85-114)||(28248237-28248266)
chr2 (25-78)||(40560259-40560312)
chr2 (82-114)||(363739-363771)
[»] chr8 (8 HSPs)
chr8 (25-116)||(44620671-44620762)
chr8 (11-115)||(5075367-5075471)
chr8 (25-114)||(9186647-9186736)
chr8 (47-114)||(9186916-9186983)
chr8 (41-114)||(23811583-23811656)
chr8 (25-67)||(27692837-27692879)
chr8 (25-114)||(9184383-9184472)
chr8 (85-114)||(33748332-33748361)
[»] chr3 (17 HSPs)
chr3 (25-115)||(33051467-33051557)
chr3 (25-113)||(49494477-49494565)
chr3 (195-252)||(11024146-11024203)
chr3 (82-119)||(40963457-40963494)
chr3 (11-116)||(41021024-41021129)
chr3 (25-114)||(48635375-48635464)
chr3 (193-252)||(11015134-11015193)
chr3 (11-114)||(23774152-23774255)
chr3 (25-104)||(42279517-42279596)
chr3 (25-104)||(51684620-51684699)
chr3 (25-115)||(23887197-23887287)
chr3 (76-114)||(49496002-49496040)
chr3 (195-252)||(11005571-11005628)
chr3 (11-92)||(33047535-33047616)
chr3 (85-114)||(33111841-33111870)
chr3 (85-114)||(40508493-40508522)
chr3 (82-114)||(26447723-26447755)
[»] scaffold0006 (1 HSPs)
scaffold0006 (25-115)||(38281-38370)
[»] chr5 (15 HSPs)
chr5 (33-114)||(27350544-27350625)
chr5 (21-114)||(27349156-27349249)
chr5 (194-255)||(42561973-42562034)
chr5 (25-114)||(40330517-40330606)
chr5 (193-237)||(179417-179461)
chr5 (193-253)||(9120122-9120182)
chr5 (25-114)||(32835876-32835965)
chr5 (25-104)||(18625043-18625122)
chr5 (25-116)||(24498069-24498160)
chr5 (41-115)||(1344832-1344906)
chr5 (193-255)||(29688488-29688550)
chr5 (85-114)||(18726565-18726594)
chr5 (85-114)||(32089987-32090016)
chr5 (85-114)||(42619289-42619318)
chr5 (200-252)||(29696602-29696654)
[»] chr7 (14 HSPs)
chr7 (26-114)||(1547666-1547754)
chr7 (25-112)||(46810707-46810794)
chr7 (25-119)||(4321033-4321127)
chr7 (11-115)||(1546286-1546390)
chr7 (25-116)||(7401891-7401982)
chr7 (25-67)||(78014-78056)
chr7 (193-255)||(48884183-48884245)
chr7 (25-114)||(8421416-8421505)
chr7 (25-102)||(22155847-22155924)
chr7 (25-102)||(22211762-22211839)
chr7 (85-114)||(30108565-30108594)
chr7 (85-114)||(46994660-46994689)
chr7 (25-65)||(27664479-27664519)
chr7 (82-114)||(34784067-34784099)
[»] chr4 (33 HSPs)
chr4 (193-255)||(7878742-7878804)
chr4 (195-255)||(7790441-7790501)
chr4 (195-255)||(7908663-7908723)
chr4 (192-252)||(48156072-48156132)
chr4 (201-253)||(50666682-50666734)
chr4 (200-255)||(7771761-7771816)
chr4 (25-116)||(10371055-10371146)
chr4 (193-255)||(7773465-7773527)
chr4 (192-250)||(48147358-48147416)
chr4 (194-255)||(48864395-48864456)
chr4 (194-255)||(49038518-49038579)
chr4 (195-255)||(7786825-7786885)
chr4 (195-255)||(7813838-7813898)
chr4 (193-253)||(49043810-49043870)
chr4 (11-114)||(10372727-10372830)
chr4 (193-255)||(45371714-45371776)
chr4 (193-255)||(48853040-48853102)
chr4 (200-252)||(7237386-7237438)
chr4 (195-255)||(7800998-7801058)
chr4 (85-116)||(2828473-2828504)
chr4 (11-114)||(10762581-10762684)
chr4 (25-115)||(230435-230525)
chr4 (25-91)||(2691396-2691462)
chr4 (193-255)||(45384532-45384594)
chr4 (194-252)||(48863625-48863683)
chr4 (195-245)||(48903316-48903366)
chr4 (204-253)||(37826632-37826681)
chr4 (85-114)||(39085214-39085243)
chr4 (85-114)||(42879275-42879304)
chr4 (85-114)||(44992808-44992837)
chr4 (195-255)||(7766003-7766063)
chr4 (82-114)||(13450363-13450395)
chr4 (85-117)||(43778386-43778418)
[»] chr6 (7 HSPs)
chr6 (38-115)||(30639610-30639687)
chr6 (11-114)||(29077328-29077431)
chr6 (85-119)||(35174386-35174420)
chr6 (193-250)||(21016180-21016237)
chr6 (11-103)||(3018453-3018545)
chr6 (201-237)||(14197341-14197377)
chr6 (82-114)||(24662480-24662512)


Alignment Details
Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 138 - 332
Target Start/End: Original strand, 24416082 - 24416276
Alignment:
Q  138 gtttatggatatttagaggatttctaagtgtatgggattcaatgcacatggatggagttgatatatgggtgatgaaagaatacaatgtgcattcatcttg 237  Q
    |||||||| |||||||||||||||| ||| |||||| ||  | |   | |||| ||||||||||||||||||||||||||||||| | ||| ||||||||    
T  24416082 gtttatgggtatttagaggatttctcagtctatgggttttgaggtttaaggatagagttgatatatgggtgatgaaagaatacaaagggcagtcatcttg 24416181  T
Q  238 aactaaaactcttgttctcagaatggataccattcctcacattttcaccatttattgtacaaaaagtggtgatattgttggaacaaattgccgta 332  Q
     |||||||||||||||||||  |||||||||||||||| ||||| | |||||| |||||||||||||||||||||||||||||||| ||||||||    
T  24416182 gactaaaactcttgttctcaacatggataccattcctcgcatttcccccatttgttgtacaaaaagtggtgatattgttggaacaagttgccgta 24416276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 51122008 - 51121905
Alignment:
Q  11 gatggacatcagagaaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattc 110  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||||| ||||||||||||||||||    
T  51122008 gatggacgtgagagaaattcagggacgaaattgatattttgcaaaatttgggaacgatgttggctgatgcttgcaaattcaaggacgaagttgatgattc 51121909  T
Q  111 actc 114  Q
    ||||    
T  51121908 actc 51121905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 198 - 334
Target Start/End: Original strand, 24367529 - 24367665
Alignment:
Q  198 atatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgttctcagaatggataccattcctcacattttcaccatttattgtac 297  Q
    |||||||||| ||| |||||||||| |||||||| ||||| ||||||||||||||||| |  |||||||||||||||| ||||||| | || | ||||||    
T  24367529 atatatgggtaatggaagaatacaaagtgcattcgtcttggactaaaactcttgttctaactatggataccattcctcgcattttccctatatgttgtac 24367628  T
Q  298 aaaaagtggtgatattgttggaacaaattgccgtact 334  Q
    ||||| |||||||||| ||||||||||| | ||||||    
T  24367629 aaaaactggtgatattattggaacaaatagtcgtact 24367665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 51123557 - 51123646
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactc 114  Q
    ||||||||||||||||||||||||| |||||||| | |||| ||||| | | ||| ||||||||||||||||||||||||||||||||||    
T  51123557 aaattcagggacgaaattgatatttcgcaaaatttgaggacaattttggttaatgattgcaaattcagggacgaagttgatgattcactc 51123646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 138 - 322
Target Start/End: Original strand, 24310520 - 24310704
Alignment:
Q  138 gtttatggatatttagaggatttctaagtgtatgggattcaatgcacatggatggagttgatatatgggtgatgaaagaatacaatgtgcattcatcttg 237  Q
    |||||||| |||||||||||||||| ||| |||||| |   | | ||  ||||  |||||||||||||||||||||||||||||| ||||| || |||||    
T  24310520 gtttatgggtatttagaggatttctcagtctatgggttatgagggacgaggataaagttgatatatgggtgatgaaagaatacaaagtgcagtcttcttg 24310619  T
Q  238 aactaaaactcttgttctcagaatggataccattcctcacattttcaccatttattgtacaaaaagtggtgatattgttggaaca 322  Q
     | ||||||||||||| |     || |||||||| || |||||| |    | | |||||||||||||||||||||||||||||||    
T  24310620 gagtaaaactcttgtttttgatttgcataccatttcttacatttcccttgtatgttgtacaaaaagtggtgatattgttggaaca 24310704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 24340771 - 24340832
Alignment:
Q  194 gttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgttct 255  Q
    |||||||| ||||| ||||||||||| || ||||| |||||||| |||||||||||||||||    
T  24340771 gttgatatctgggtaatgaaagaatataaagtgcagtcatcttggactaaaactcttgttct 24340832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 24353136 - 24353197
Alignment:
Q  194 gttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgttct 255  Q
    |||||||| ||||| ||||||||||| || ||||| |||||||| |||||||||||||||||    
T  24353136 gttgatatctgggtaatgaaagaatataaagtgcagtcatcttggactaaaactcttgttct 24353197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 24323139 - 24323191
Alignment:
Q  203 tgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgttct 255  Q
    |||||||||||||||||||| ||||| |||||||  |||||||||||||||||    
T  24323139 tgggtgatgaaagaatacaaagtgcagtcatcttcgactaaaactcttgttct 24323191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 35478176 - 35478087
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactc 114  Q
    |||||||||||  |||||||||||||||| ||||  ||||| | ||| || ||  | || ||||||||||| ||||||||||||||||||    
T  35478176 aaattcagggattaaattgatattttgcataattgagggactaatttggccgacccgtgaaaattcagggatgaagttgatgattcactc 35478087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 322
Target Start/End: Original strand, 24323228 - 24323258
Alignment:
Q  292 ttgtacaaaaagtggtgatattgttggaaca 322  Q
    |||||||||||||||||||||||||||||||    
T  24323228 ttgtacaaaaagtggtgatattgttggaaca 24323258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 334
Target Start/End: Original strand, 24340872 - 24340914
Alignment:
Q  292 ttgtacaaaaagtggtgatattgttggaacaaattgccgtact 334  Q
    |||||||| |||||||||||||||||||||| || ||||||||    
T  24340872 ttgtacaacaagtggtgatattgttggaacagatagccgtact 24340914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 334
Target Start/End: Original strand, 24353237 - 24353279
Alignment:
Q  292 ttgtacaaaaagtggtgatattgttggaacaaattgccgtact 334  Q
    |||||||| |||||||||||||||||||||| || ||||||||    
T  24353237 ttgtacaacaagtggtgatattgttggaacagatagccgtact 24353279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 114
Target Start/End: Original strand, 5784929 - 5784958
Alignment:
Q  85 aaattcagggacgaagttgatgattcactc 114  Q
    ||||||||||||||||||||||||||||||    
T  5784929 aaattcagggacgaagttgatgattcactc 5784958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 11152574 - 11152545
Alignment:
Q  85 aaattcagggacgaagttgatgattcactc 114  Q
    ||||||||||||||||||||||||||||||    
T  11152574 aaattcagggacgaagttgatgattcactc 11152545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 114
Target Start/End: Original strand, 31803762 - 31803791
Alignment:
Q  85 aaattcagggacgaagttgatgattcactc 114  Q
    ||||||||||||||||||||||||||||||    
T  31803762 aaattcagggacgaagttgatgattcactc 31803791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 114
Target Start/End: Original strand, 44159356 - 44159385
Alignment:
Q  85 aaattcagggacgaagttgatgattcactc 114  Q
    ||||||||||||||||||||||||||||||    
T  44159356 aaattcagggacgaagttgatgattcactc 44159385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 45379114 - 45379085
Alignment:
Q  85 aaattcagggacgaagttgatgattcactc 114  Q
    ||||||||||||||||||||||||||||||    
T  45379114 aaattcagggacgaagttgatgattcactc 45379085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 42134585 - 42134477
Alignment:
Q  11 gatggacatcagagaaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattc 110  Q
    ||||||| || || |||||||||||| || ||||||||| ||| ||||  |||| |||||| || ||  | |  ||||||| ||||||| |||||| |||    
T  42134585 gatggacgtctgacaaattcagggactaagttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaaggacgaatttgatggttc 42134486  T
Q  111 actctaaaa 119  Q
    |||||||||    
T  42134485 actctaaaa 42134477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 17946197 - 17946097
Alignment:
Q  11 gatggacatcagagaaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattc 110  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17946197 gatggacatgagagaaattcagggacaaaattgatattttgcaaaatttaaggacgattttagctgatgcttgcaaattcagggacgaagttgatgattc 17946098  T
Q  111 a 111  Q
    |    
T  17946097 a 17946097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 7744146 - 7744037
Alignment:
Q  11 gatggacatcagagaaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattc 110  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||  | |||||||||  || ||||||||||||||||||||||||||||||||||    
T  7744146 gatggacatgagagaaattcagggacgaaattgatatttcgcaaaattttgagacgattttgcctaatgcttgcaaattcagggacgaagttgatgattc 7744047  T
Q  111 actctaaaat 120  Q
    ||||| ||||    
T  7744046 actcttaaat 7744037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 17948929 - 17949021
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactctaa 117  Q
    ||||||| ||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  17948929 aaattcaaggacgaaattgatatttcgcaaaatttggggacgattttggctgatgcttgcaaattcatggacgaagttgatgattcactctaa 17949021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 7745274 - 7745363
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactc 114  Q
    ||||||| | ||||||||||||||| |||||||| |||||||||||| |||||||||| ||||||||  |||||| ||||||||||||||    
T  7745274 aaattcaagaacgaaattgatatttcgcaaaatttggggacgattttggctgatgcttacaaattcaatgacgaaattgatgattcactc 7745363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 41144 - 41233
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactc 114  Q
    |||||||||||  |||||||||||| ||| ||||  ||||||| ||| || ||  | || ||||||||||||||||||||||||||||||    
T  41144 aaattcagggattaaattgatatttcgcataattgagggacgaatttggccgacccgtgaaaattcagggacgaagttgatgattcactc 41233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 11021622 - 11021531
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactcta 116  Q
    |||||||||||  |||||||||||| ||| ||||  |||||||  || || ||  | || ||||||||||||||||||||||||||||||||    
T  11021622 aaattcagggattaaattgatatttcgcataattgagggacgaagttggccgacccgtgaaaattcagggacgaagttgatgattcactcta 11021531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 33222 - 33190
Alignment:
Q  85 aaattcagggacgaagttgatgattcactctaa 117  Q
    |||||||||||||||||||||||||||||||||    
T  33222 aaattcagggacgaagttgatgattcactctaa 33190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 116
Target Start/End: Original strand, 42880873 - 42880904
Alignment:
Q  85 aaattcagggacgaagttgatgattcactcta 116  Q
    ||||||||||||||||||||||||||||||||    
T  42880873 aaattcagggacgaagttgatgattcactcta 42880904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 114
Target Start/End: Original strand, 28248237 - 28248266
Alignment:
Q  85 aaattcagggacgaagttgatgattcactc 114  Q
    ||||||||||||||||||||||||||||||    
T  28248237 aaattcagggacgaagttgatgattcactc 28248266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 40560312 - 40560259
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgat 78  Q
    |||||||||||| |||| ||||||| ||||||||| ||||||| ||| ||||||    
T  40560312 aaattcagggactaaatagatatttcgcaaaattcagggacgaatttggctgat 40560259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 363739 - 363771
Alignment:
Q  82 tgcaaattcagggacgaagttgatgattcactc 114  Q
    |||||||||| ||||||||||||||||||||||    
T  363739 tgcaaattcaaggacgaagttgatgattcactc 363771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 44620671 - 44620762
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactcta 116  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||  | |||||||||||||||||||||||||||||||||||||||||    
T  44620671 aaattcagggacgaaattgatattttgcaaaatttggggacgattttgaccgatgcttgcaaattcagggacgaagttgatgattcactcta 44620762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 5075471 - 5075367
Alignment:
Q  11 gatggacatcagagaaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattc 110  Q
    ||||||| | ||||||||||| |||| |||||||||||| |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  5075471 gatggacgtgagagaaattcaaggacaaaattgatatttcgcaaaatttggggacgattttggctgatgcttgcaaattcaaggacgaagttgatgattc 5075372  T
Q  111 actct 115  Q
    |||||    
T  5075371 actct 5075367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 9186647 - 9186736
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactc 114  Q
    ||||| |||||| || ||||||||| ||| |||| |||||||||||| |||||| |||| ||||||| ||||| ||||||||||||||||    
T  9186647 aaatttagggactaatttgatatttcgcataatttggggacgattttggctgatccttgtaaattcaaggacggagttgatgattcactc 9186736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 9186916 - 9186983
Alignment:
Q  47 ttttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactc 114  Q
    ||||||| |||| |||||||||||| |||||| |||| ||||||| ||||| ||||||||||||||||    
T  9186916 ttttgcataatttggggacgattttggctgatccttgtaaattcaaggacggagttgatgattcactc 9186983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 23811583 - 23811656
Alignment:
Q  41 ttgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactc 114  Q
    ||||||||||| |||||| |||||||| ||| || ||| | ||| |||||||||||||||||||| ||| ||||    
T  23811583 ttgatattttgtaaaattgggggacgaatttggccgatccgtgcgaattcagggacgaagttgataatttactc 23811656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 27692837 - 27692879
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacga 67  Q
    |||||||||||| || ||||||||||||||||||| |||||||    
T  27692837 aaattcagggactaatttgatattttgcaaaattcagggacga 27692879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 9184472 - 9184383
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactc 114  Q
    |||||||||||| || ||||||||| ||  | || || ||||| ||| || ||| | |||||||||| ||||||| ||||||||||||||    
T  9184472 aaattcagggactaatttgatatttcgcgtagttgggcgacgaatttggccgattcgtgcaaattcaaggacgaaattgatgattcactc 9184383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 33748361 - 33748332
Alignment:
Q  85 aaattcagggacgaagttgatgattcactc 114  Q
    ||||||||||||||||||||||||||||||    
T  33748361 aaattcagggacgaagttgatgattcactc 33748332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 33051467 - 33051557
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactct 115  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||| | ||||||||||||||| |||||||||||||||||||||||||    
T  33051467 aaattcagggacgaaattgatattttgcaaaatttagggacgattttggttgatgcttgcaaatttagggacgaagttgatgattcactct 33051557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 49494565 - 49494477
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcact 113  Q
    ||||||||||| ||||||||||||| | |||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  49494565 aaattcagggatgaaattgatatttcgtaaaatttggggacgattttgattgatgcttgcaaattcagggacgaagttgatgattcact 49494477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 11024203 - 11024146
Alignment:
Q  195 ttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgt 252  Q
    |||| |||||||| |||||||||||||| |||||||| ||||| ||||| ||||||||    
T  11024203 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 11024146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 40963457 - 40963494
Alignment:
Q  82 tgcaaattcagggacgaagttgatgattcactctaaaa 119  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  40963457 tgcaaattcagggacgaagttgatgattcactccaaaa 40963494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 41021024 - 41021129
Alignment:
Q  11 gatggacatcagagaaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattc 110  Q
    ||||||| || || ||||||||||| |||||||| |||| ||| ||||  ||||| | ||| || || || || ||||||||||||||| |||||| |||    
T  41021024 gatggacgtctgacaaattcagggatgaaattgaaatttcgcataattgagggactaatttggccgacgcgtgaaaattcagggacgaatttgatggttc 41021123  T
Q  111 actcta 116  Q
    ||||||    
T  41021124 actcta 41021129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 48635375 - 48635464
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactc 114  Q
    |||||||||||  |||||||||||| ||| ||||  ||||||| |||  | ||| | || ||||||||||||||| ||||||||||||||    
T  48635375 aaattcagggattaaattgatatttcgcataattaagggacgaatttgaccgatccgtgaaaattcagggacgaaattgatgattcactc 48635464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 11015193 - 11015134
Alignment:
Q  193 agttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgt 252  Q
    |||||| |||||||| |||||||||||||| |||||||| |||||   ||||||||||||    
T  11015193 agttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 11015134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 23774255 - 23774152
Alignment:
Q  11 gatggacatcagagaaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattc 110  Q
    ||||||| || || |||||||||||| |||||||||||| ||| ||||  ||||||| ||| || ||  | || ||||||| ||||||| |||||| |||    
T  23774255 gatggacgtctgacaaattcagggactaaattgatatttcgcataattgagggacgaatttggccgactcgtgaaaattcaaggacgaatttgatggttc 23774156  T
Q  111 actc 114  Q
    ||||    
T  23774155 actc 23774152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 42279596 - 42279517
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttga 104  Q
    |||||||||||| |||| ||||||||||||||||| | ||||| || |||||||  ||| |||||||  |||||| ||||    
T  42279596 aaattcagggactaaatagatattttgcaaaattctgagacgaattgagctgatttttgaaaattcaatgacgaatttga 42279517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 51684699 - 51684620
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttga 104  Q
    ||||||| |||| |||| ||||||||||||||||| |||| || ||| ||||||  ||| ||||||| ||||||| ||||    
T  51684699 aaattcaaggactaaatagatattttgcaaaattcagggatgaatttggctgatttttgaaaattcaaggacgaatttga 51684620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 23887287 - 23887197
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactct 115  Q
    |||||||||||  |||||||||||| ||| ||||  |||||||  ||||| ||  | |  ||||||| |||||||||||||||||||||||    
T  23887287 aaattcagggattaaattgatatttcgcataattgagggacgaagttagccgacccataaaaattcaaggacgaagttgatgattcactct 23887197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 49496002 - 49496040
Alignment:
Q  76 gatgcttgcaaattcagggacgaagttgatgattcactc 114  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  49496002 gatgtttgcaaattcaaggacgaagttgatgattcactc 49496040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 11005628 - 11005571
Alignment:
Q  195 ttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgt 252  Q
    |||| |||||||| |||||||||||||| |||||||| ||||| |||||  |||||||    
T  11005628 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaaggctcttgt 11005571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 33047616 - 33047535
Alignment:
Q  11 gatggacatcagagaaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcag 92  Q
    ||||||| | |||||| |||| ||||||||||||||||| |||||||| | |||| |||||  |   |||||||||||||||    
T  33047616 gatggacgtgagagaatttcaaggacgaaattgatatttcgcaaaatttgaggacaattttgacccttgcttgcaaattcag 33047535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 33111870 - 33111841
Alignment:
Q  85 aaattcagggacgaagttgatgattcactc 114  Q
    ||||||||||||||||||||||||||||||    
T  33111870 aaattcagggacgaagttgatgattcactc 33111841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 40508522 - 40508493
Alignment:
Q  85 aaattcagggacgaagttgatgattcactc 114  Q
    ||||||||||||||||||||||||||||||    
T  40508522 aaattcagggacgaagttgatgattcactc 40508493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 26447755 - 26447723
Alignment:
Q  82 tgcaaattcagggacgaagttgatgattcactc 114  Q
    |||||||| ||||||||||||||||||||||||    
T  26447755 tgcaaatttagggacgaagttgatgattcactc 26447723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 38281 - 38370
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactct 115  Q
    ||||| ||||||||||| ||||||| |||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  38281 aaattgagggacgaaat-gatatttcgcaaaatttggggacgattttggttgatgcttgcaaattcagggacgaagttgatgattcactct 38370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 27350544 - 27350625
Alignment:
Q  33 ggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactc 114  Q
    |||||||||||||||||  ||||||| |||  ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27350544 ggacgaaattgatatttcacaaaatttgggatcgattttggctgatgcttgcaaattcagggacgaagttgatgattcactc 27350625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 27349249 - 27349156
Alignment:
Q  21 agagaaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactc 114  Q
    ||||||||||| |||| |||| ||||||| |||||||| | || ||||||| | ||||| |||||| |||| ||||||||||||||||||||||    
T  27349249 agagaaattcaaggacaaaatcgatatttcgcaaaatttgaggtcgattttggttgatgtttgcaacttcaaggacgaagttgatgattcactc 27349156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 42562034 - 42561973
Alignment:
Q  194 gttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgttct 255  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||| | |||||||||    
T  42562034 gttgatatatgggtgatgaaagaatacaaagtgcattcatcttggactaagattcttgttct 42561973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 40330517 - 40330606
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactc 114  Q
    |||||||||||  |||||||||||| ||| ||||  ||||||||||| || ||  | || ||||||||||||||||||||||||||||||    
T  40330517 aaattcagggattaaattgatatttcgcataattgagggacgattttggccgacccgtgaaaattcagggacgaagttgatgattcactc 40330606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 179417 - 179461
Alignment:
Q  193 agttgatatatgggtgatgaaagaatacaatgtgcattcatcttg 237  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||    
T  179417 agttgaaatatgggtgatgaaagaatacaaagtgcattcatcttg 179461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 9120122 - 9120182
Alignment:
Q  193 agttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgtt 253  Q
    |||||| ||||||||||||||||||||||| |||||||| ||||| |  ||||||||||||    
T  9120122 agttgaaatatgggtgatgaaagaatacaaagtgcattcctcttggaagaaaactcttgtt 9120182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 32835965 - 32835876
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactc 114  Q
    |||||||||||  |||||||||||| ||| ||||  ||||||| |||  | ||  | || ||||||||||||||||||||||||||||||    
T  32835965 aaattcagggattaaattgatatttcgcataattaagggacgaatttgaccgacccgtgaaaattcagggacgaagttgatgattcactc 32835876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 18625043 - 18625122
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttga 104  Q
    |||||||||||| |||| |||||||  |||||||| ||||||| ||||||||||   || ||||||| ||||||| ||||    
T  18625043 aaattcagggactaaatagatatttcacaaaattcagggacgaatttagctgatcagtgaaaattcaaggacgaatttga 18625122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 24498069 - 24498160
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactcta 116  Q
    |||||||||||| || ||||| | | ||| ||||  |||| ||||||  | ||| |||||||||||| |||||||||| |||||||||||||    
T  24498069 aaattcagggactaatttgatttatcgcataattgagggatgattttgaccgatccttgcaaattcacggacgaagttaatgattcactcta 24498160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 1344832 - 1344906
Alignment:
Q  41 ttgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactct 115  Q
    ||||||||| | |||||| |||||| | |||  | ||| | |||||||||||||||||| |||||||||||||||    
T  1344832 ttgatatttcgtaaaattgggggacaaatttgaccgattcatgcaaattcagggacgaaattgatgattcactct 1344906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 29688488 - 29688550
Alignment:
Q  193 agttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgttct 255  Q
    |||||| ||||||||||||||| ||||||||||||| || ||||| || || ||||| |||||    
T  29688488 agttgaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttggacaaagactctcgttct 29688550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 18726594 - 18726565
Alignment:
Q  85 aaattcagggacgaagttgatgattcactc 114  Q
    ||||||||||||||||||||||||||||||    
T  18726594 aaattcagggacgaagttgatgattcactc 18726565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 114
Target Start/End: Original strand, 32089987 - 32090016
Alignment:
Q  85 aaattcagggacgaagttgatgattcactc 114  Q
    ||||||||||||||||||||||||||||||    
T  32089987 aaattcagggacgaagttgatgattcactc 32090016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 42619318 - 42619289
Alignment:
Q  85 aaattcagggacgaagttgatgattcactc 114  Q
    ||||||||||||||||||||||||||||||    
T  42619318 aaattcagggacgaagttgatgattcactc 42619289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 29696602 - 29696654
Alignment:
Q  200 atatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgt 252  Q
    |||||||||||| || ||||||||||||| || ||||| ||||| ||||||||    
T  29696602 atatgggtgatggaaaaatacaatgtgcaatcctcttggactaagactcttgt 29696654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 1547666 - 1547754
Alignment:
Q  26 aattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactc 114  Q
    |||| |||||| ||||||||||||||||||||| |  |||||||||  ||||| |||||||||||| ||||||||||||||||||||||    
T  1547666 aatttagggacaaaattgatattttgcaaaatttgaagacgattttgactgatacttgcaaattcatggacgaagttgatgattcactc 1547754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 46810794 - 46810707
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcac 112  Q
    |||||||||||  |||||||||||| ||| ||||  ||||| | ||| || ||| | || ||||||||||||||||||||||||||||    
T  46810794 aaattcagggattaaattgatatttcgcataattgagggactaatttggccgatccgtgaaaattcagggacgaagttgatgattcac 46810707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 119
Target Start/End: Complemental strand, 4321127 - 4321033
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactctaaaa 119  Q
    |||||||||||  |||||||||||| ||| ||||  |||||||  || || ||  | || |||||||||||||||||||||||||||||| ||||    
T  4321127 aaattcagggattaaattgatatttcgcataattaagggacgaagttggccgacccgtgaaaattcagggacgaagttgatgattcactcaaaaa 4321033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 1546390 - 1546286
Alignment:
Q  11 gatggacatcagagaaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattc 110  Q
    ||||||| | ||||||||||| ||||| ||||||||||| |||||||| |  |||||||||  ||||| |||  |||||||  ||||||||  | |||||    
T  1546390 gatggacgtgagagaaattcaaggacgcaattgatatttcgcaaaatttgaagacgattttgactgatacttataaattcaaagacgaagtatacgattc 1546291  T
Q  111 actct 115  Q
    |||||    
T  1546290 actct 1546286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 7401982 - 7401891
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactcta 116  Q
    ||||||||||||||| ||||||||| |  ||||| | |||||||| | | ||||   |||||||||| ||||||| ||||||||| ||||||    
T  7401982 aaattcagggacgaatttgatatttcgataaattggaggacgattatggttgatctgtgcaaattcaaggacgaatttgatgatttactcta 7401891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 78014 - 78056
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacga 67  Q
    |||||||||||| || ||||||||||||||||||| |||||||    
T  78014 aaattcagggacaaatttgatattttgcaaaattcagggacga 78056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 48884183 - 48884245
Alignment:
Q  193 agttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgttct 255  Q
    |||||| |||| |||||||||||||||||| ||||||   ||||| ||||| |||||||||||    
T  48884183 agttgaaatataggtgatgaaagaatacaaagtgcatatgtcttggactaagactcttgttct 48884245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 8421505 - 8421416
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactc 114  Q
    |||||||||||  |||||||||||| ||| ||||  ||||||| ||| || ||  | ||  ||||||||||| |||||||||||||||||    
T  8421505 aaattcagggattaaattgatatttcgcataattgagggacgaatttggccgacccgtgataattcagggactaagttgatgattcactc 8421416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 22155847 - 22155924
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagtt 102  Q
    |||||||||||| |||| | |||||||||||||||  |||||| ||| || |||  ||| ||||||| ||||||||||    
T  22155847 aaattcagggacaaaatagctattttgcaaaattcatggacgaatttggccgatttttgaaaattcaaggacgaagtt 22155924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 22211762 - 22211839
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagtt 102  Q
    |||||||||||| |||| | |||||||||||||||  |||||| ||| || |||  ||| ||||||| ||||||||||    
T  22211762 aaattcagggacaaaatagctattttgcaaaattcatggacgaatttggccgatttttgaaaattcaaggacgaagtt 22211839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 30108594 - 30108565
Alignment:
Q  85 aaattcagggacgaagttgatgattcactc 114  Q
    ||||||||||||||||||||||||||||||    
T  30108594 aaattcagggacgaagttgatgattcactc 30108565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 46994689 - 46994660
Alignment:
Q  85 aaattcagggacgaagttgatgattcactc 114  Q
    ||||||||||||||||||||||||||||||    
T  46994689 aaattcagggacgaagttgatgattcactc 46994660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 27664519 - 27664479
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggac 65  Q
    |||||||||||| || ||||||||||||||||||| |||||    
T  27664519 aaattcagggactaatttgatattttgcaaaattcagggac 27664479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 34784099 - 34784067
Alignment:
Q  82 tgcaaattcagggacgaagttgatgattcactc 114  Q
    |||||||||| ||||||||||||||||||||||    
T  34784099 tgcaaattcaaggacgaagttgatgattcactc 34784067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 7878742 - 7878804
Alignment:
Q  193 agttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgttct 255  Q
    |||||| ||||||||||||||||||||||| |||||||||||||| | |||||||||||||||    
T  7878742 agttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttgttct 7878804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 7790441 - 7790501
Alignment:
Q  195 ttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgttct 255  Q
    |||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||    
T  7790441 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttct 7790501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 7908663 - 7908723
Alignment:
Q  195 ttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgttct 255  Q
    |||| ||||||||||||||||||||||| |||||||||||||| | |||||||||||||||    
T  7908663 ttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgttct 7908723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 48156132 - 48156072
Alignment:
Q  192 gagttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgt 252  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||| ||||||||||||||    
T  48156132 gagttgaaatatgggtgatgaacgaatacaaagtgcattcttcttggactaaaactcttgt 48156072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 50666682 - 50666734
Alignment:
Q  201 tatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgtt 253  Q
    ||||||||||| |||||||||| |||||||||||||| |||||||||||||||    
T  50666682 tatgggtgatgtaagaatacaaagtgcattcatcttggactaaaactcttgtt 50666734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 7771761 - 7771816
Alignment:
Q  200 atatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgttct 255  Q
    ||||||||||||||||||||||| |||||||| || || |||||||||||||||||    
T  7771761 atatgggtgatgaaagaatacaaagtgcattcgtcatggactaaaactcttgttct 7771816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 10371146 - 10371055
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactcta 116  Q
    ||||||||||| ||||||||||||| ||| ||||  ||||| | |||||| || || || |||||||||||| ||||||||| |||||||||    
T  10371146 aaattcagggatgaaattgatatttcgcataattgagggactaatttagccgacgcgtgaaaattcagggactaagttgatggttcactcta 10371055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 7773527 - 7773465
Alignment:
Q  193 agttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgttct 255  Q
    |||||| ||||||||||||||||||||||| |||||||| ||||| | |||| ||||||||||    
T  7773527 agttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggattaaatctcttgttct 7773465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 48147416 - 48147358
Alignment:
Q  192 gagttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactctt 250  Q
    ||||||| ||||||||||||||||||||||| |||||||| ||||| ||||| ||||||    
T  48147416 gagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagactctt 48147358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 48864395 - 48864456
Alignment:
Q  194 gttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgttct 255  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||| ||||| | |||||||||    
T  48864395 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgttct 48864456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 49038579 - 49038518
Alignment:
Q  194 gttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgttct 255  Q
    ||||| ||||||||||||||||||||||| || ||||| ||||| ||||| |||||||||||    
T  49038579 gttgaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactcttgttct 49038518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 7786825 - 7786885
Alignment:
Q  195 ttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgttct 255  Q
    |||| ||||||||||||||||||||||| ||||||| |||||| | ||| |||||||||||    
T  7786825 ttgaaatatgggtgatgaaagaatacaacgtgcatttatcttggaataagactcttgttct 7786885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 7813838 - 7813898
Alignment:
Q  195 ttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgttct 255  Q
    |||| ||||||||| ||||||||||||| |||||||| ||||| | |||||||||||||||    
T  7813838 ttgaaatatgggtgttgaaagaatacaaagtgcattcgtcttggaataaaactcttgttct 7813898  T

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Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 49043870 - 49043810
Alignment:
Q  193 agttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgtt 253  Q
    |||||| ||||||||||||||||||||||| |||||||| || || ||||| |||||||||    
T  49043870 agttgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgtt 49043810  T

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Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 10372727 - 10372830
Alignment:
Q  11 gatggacatcagagaaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattc 110  Q
    ||||||| || || ||||||||||| ||||||||||||| ||| ||||  ||||| | ||| || || || || ||||||||||||||| |||||| |||    
T  10372727 gatggacgtctgacaaattcagggatgaaattgatatttcgcataattgagggactaatttggccgacgcgtgaaaattcagggacgaatttgatggttc 10372826  T
Q  111 actc 114  Q
    ||||    
T  10372827 actc 10372830  T

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Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 45371776 - 45371714
Alignment:
Q  193 agttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgttct 255  Q
    |||||| |||||||| |||||||||||||| |||||||| ||||| ||||| ||| |||||||    
T  45371776 agttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagacttttgttct 45371714  T

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Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 48853040 - 48853102
Alignment:
Q  193 agttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgttct 255  Q
    |||||| |||||||| |||||||||||||| |||| ||| ||||| ||||| |||||||||||    
T  48853040 agttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttct 48853102  T

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Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 7237438 - 7237386
Alignment:
Q  200 atatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgt 252  Q
    |||||||||||||||||||||||  ||||||| | ||| ||||||||||||||    
T  7237438 atatgggtgatgaaagaatacaaaatgcattcgttttggactaaaactcttgt 7237386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 7800998 - 7801058
Alignment:
Q  195 ttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgttct 255  Q
    |||| ||||||||| ||||||| ||||| |||||||| ||||| | |||||||||||||||    
T  7800998 ttgaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttct 7801058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 116
Target Start/End: Original strand, 2828473 - 2828504
Alignment:
Q  85 aaattcagggacgaagttgatgattcactcta 116  Q
    ||||||||||||||||||||||||||||||||    
T  2828473 aaattcagggacgaagttgatgattcactcta 2828504  T

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Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 10762684 - 10762581
Alignment:
Q  11 gatggacatcagagaaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattc 110  Q
    ||||||| || || ||||||||||| |||||||| |||| ||| ||||  ||||| | ||| || || || || ||||||||||||||| |||||| |||    
T  10762684 gatggacgtctgacaaattcagggatgaaattgaaatttcgcataattgagggactaatttggccgacgcgtgaaaattcagggacgaatttgatggttc 10762585  T
Q  111 actc 114  Q
    ||||    
T  10762584 actc 10762581  T

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Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 230525 - 230435
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactct 115  Q
    |||||||| ||| || ||||||||| ||| ||||  ||||||||||| || ||| ||| |||| ||| |||  ||||||||||||||||||    
T  230525 aaattcagagactaatttgatatttcgcataattgagggacgattttggccgatccttacaaactcaaggataaagttgatgattcactct 230435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 2691462 - 2691396
Alignment:
Q  25 aaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattca 91  Q
    |||||||||||| |||| |||||||||||||||| | |||||| ||| ||||||  ||| |||||||    
T  2691462 aaattcagggactaaatagatattttgcaaaatttgtggacgaatttggctgatttttgaaaattca 2691396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 45384594 - 45384532
Alignment:
Q  193 agttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgttct 255  Q
    |||||| |||||||||||||||||||| || |||||||| ||||| || || |||| ||||||    
T  45384594 agttgaaatatgggtgatgaaagaatataaagtgcattcgtcttggacaaagactcgtgttct 45384532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 48863625 - 48863683
Alignment:
Q  194 gttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgt 252  Q
    ||||| |||||||||||| ||||||||   |||||||||||||| | ||||||||||||    
T  48863625 gttgacatatgggtgatggaagaatacggagtgcattcatcttggattaaaactcttgt 48863683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 48903316 - 48903366
Alignment:
Q  195 ttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaa 245  Q
    |||| ||||||||||||||||||||||| |||||||  ||||| |||||||    
T  48903316 ttgaaatatgggtgatgaaagaatacaaagtgcatttgtcttggactaaaa 48903366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 37826681 - 37826632
Alignment:
Q  204 gggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgtt 253  Q
    |||||||||||||||||||  ||||||| ||||| ||||| |||||||||    
T  37826681 gggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgtt 37826632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 114
Target Start/End: Original strand, 39085214 - 39085243
Alignment:
Q  85 aaattcagggacgaagttgatgattcactc 114  Q
    ||||||||||||||||||||||||||||||    
T  39085214 aaattcagggacgaagttgatgattcactc 39085243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 42879304 - 42879275
Alignment:
Q  85 aaattcagggacgaagttgatgattcactc 114  Q
    ||||||||||||||||||||||||||||||    
T  42879304 aaattcagggacgaagttgatgattcactc 42879275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 44992837 - 44992808
Alignment:
Q  85 aaattcagggacgaagttgatgattcactc 114  Q
    ||||||||||||||||||||||||||||||    
T  44992837 aaattcagggacgaagttgatgattcactc 44992808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 7766003 - 7766063
Alignment:
Q  195 ttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactcttgttct 255  Q
    |||| ||||||||||||||||||||||| ||| |||| || || ||||| || ||||||||    
T  7766003 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttct 7766063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 13450363 - 13450395
Alignment:
Q  82 tgcaaattcagggacgaagttgatgattcactc 114  Q
    |||||||||| ||||||||||||||||||||||    
T  13450363 tgcaaattcaaggacgaagttgatgattcactc 13450395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 43778418 - 43778386
Alignment:
Q  85 aaattcagggacgaagttgatgattcactctaa 117  Q
    ||||||| |||||||||||||||||||||||||    
T  43778418 aaattcaaggacgaagttgatgattcactctaa 43778386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 30639687 - 30639610
Alignment:
Q  38 aaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattcactct 115  Q
    |||||||||||||||| ||||  ||||| | ||| || ||  | || |||||||||||||||||||||||||||||||    
T  30639687 aaattgatattttgcataattgagggactaatttggccgacccgtgaaaattcagggacgaagttgatgattcactct 30639610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 29077431 - 29077328
Alignment:
Q  11 gatggacatcagagaaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttgatgattc 110  Q
    ||||||| || || ||||||||||| |||||||| |||| ||| ||||  ||||| | ||| || || || || ||||||||||||||| |||||| |||    
T  29077431 gatggacgtctgacaaattcagggatgaaattgaaatttcgcataattgagggactaatttggccgacgcgtgaaaattcagggacgaatttgatggttc 29077332  T
Q  111 actc 114  Q
    ||||    
T  29077331 actc 29077328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 119
Target Start/End: Complemental strand, 35174420 - 35174386
Alignment:
Q  85 aaattcagggacgaagttgatgattcactctaaaa 119  Q
    |||||||||||||||||||||||||||||| ||||    
T  35174420 aaattcagggacgaagttgatgattcactcaaaaa 35174386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 21016180 - 21016237
Alignment:
Q  193 agttgatatatgggtgatgaaagaatacaatgtgcattcatcttgaactaaaactctt 250  Q
    |||||| |||||||| |||||||||||||| || ||||| ||||| ||||| ||||||    
T  21016180 agttgaaatatgggttatgaaagaatacaaagtacattcgtcttggactaagactctt 21016237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 3018453 - 3018545
Alignment:
Q  11 gatggacatcagagaaattcagggacgaaattgatattttgcaaaattcggggacgattttagctgatgcttgcaaattcagggacgaagttg 103  Q
    ||||||| || || |||||||||||| || ||||||||| ||| ||||  |||||||  || || || || || |||||||||||||||||||    
T  3018453 gatggacgtctgacaaattcagggactaagttgatatttcgcataattgagggacgaagttggccgacgcgtgaaaattcagggacgaagttg 3018545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 14197377 - 14197341
Alignment:
Q  201 tatgggtgatgaaagaatacaatgtgcattcatcttg 237  Q
    ||||||||||||||||||||||  |||||||||||||    
T  14197377 tatgggtgatgaaagaatacaaaatgcattcatcttg 14197341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 24662512 - 24662480
Alignment:
Q  82 tgcaaattcagggacgaagttgatgattcactc 114  Q
    |||||||||| ||||||||||||||||||||||    
T  24662512 tgcaaattcaaggacgaagttgatgattcactc 24662480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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