View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7631_high_1 (Length: 990)

Name: NF7631_high_1
Description: NF7631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7631_high_1
NF7631_high_1
[»] chr3 (9 HSPs)
chr3 (461-975)||(7050680-7051194)
chr3 (622-975)||(32558504-32558863)
chr3 (628-975)||(52717122-52717476)
chr3 (278-399)||(7051264-7051385)
chr3 (278-396)||(52099114-52099230)
chr3 (474-537)||(30174410-30174474)
chr3 (628-672)||(53343105-53343149)
chr3 (626-672)||(25694866-25694912)
chr3 (629-678)||(45781551-45781600)
[»] chr4 (6 HSPs)
chr4 (16-399)||(17224797-17225180)
chr4 (461-543)||(17225242-17225324)
chr4 (461-543)||(5373884-5373966)
chr4 (482-567)||(40225492-40225578)
chr4 (630-678)||(51282091-51282139)
chr4 (630-672)||(21838253-21838295)
[»] chr1 (12 HSPs)
chr1 (655-972)||(8641339-8641661)
chr1 (278-399)||(11398080-11398200)
chr1 (278-395)||(18136560-18136676)
chr1 (276-363)||(6904575-6904664)
chr1 (461-535)||(11398268-11398344)
chr1 (771-873)||(45500135-45500230)
chr1 (464-565)||(18136414-18136515)
chr1 (482-545)||(52935170-52935234)
chr1 (482-545)||(52942805-52942869)
chr1 (482-565)||(52946193-52946277)
chr1 (496-535)||(31230366-31230405)
chr1 (637-708)||(45499984-45500055)
[»] chr2 (4 HSPs)
chr2 (276-399)||(42735437-42735560)
chr2 (461-545)||(42735280-42735367)
chr2 (628-678)||(1521649-1521699)
chr2 (628-678)||(1522391-1522441)
[»] chr7 (5 HSPs)
chr7 (280-399)||(47762228-47762346)
chr7 (331-391)||(20290530-20290590)
chr7 (461-565)||(47762053-47762158)
chr7 (461-538)||(20290674-20290752)
chr7 (627-672)||(22297900-22297945)
[»] chr8 (4 HSPs)
chr8 (112-243)||(39948290-39948428)
chr8 (278-392)||(6142032-6142146)
chr8 (628-678)||(14707026-14707076)
chr8 (623-672)||(40600661-40600710)
[»] chr5 (5 HSPs)
chr5 (628-678)||(6697367-6697417)
chr5 (464-565)||(10548172-10548274)
chr5 (628-677)||(6695787-6695836)
chr5 (628-672)||(38558946-38558990)
chr5 (461-543)||(20319530-20319612)
[»] chr6 (1 HSPs)
chr6 (628-678)||(7683513-7683563)
[»] scaffold0590 (1 HSPs)
scaffold0590 (464-565)||(5017-5121)


Alignment Details
Target: chr3 (Bit Score: 482; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 461 - 975
Target Start/End: Complemental strand, 7051194 - 7050680
Alignment:
Q  461 tttcatcacatattttccatccttatttccttggatttctcttatttataagggtccatattcctttttcccatattaccccttccagttccatgactca 560  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7051194 tttcatcacatattttccatccttatttccttggatttctcttatttataagggtccatattcctttttcccatattaccccttccagttccatgactca 7051095  T
Q  561 ttacaaccttcctcacatgtcacatcaaatttgtaattgtttcgttcttgaatcgacttgattaaatggtggattctagggtgaaccatcaaataagtga 660  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7051094 ttacaaccttcctcacatgtcacatcaaatttgtaattgtttcgttcttgaatcgacttgattaaatggtggattctagggtgaaccatcaaataagtga 7050995  T
Q  661 ttcatcggtggatcattttgagcaatagttgagagtcattggattcatcacactcgtaaattctaccacctacactagatcannnnnnnccctcttcctc 760  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  7050994 ttcatcggtggatcattttgagcaatagttgagagtcattggattcatcacactcgtaaattctaccacctacactagatcatttttttccctcttcctc 7050895  T
Q  761 cctctcgctggcctcatccttccacttttccattaatggtacctcaccaactatttcacattcttgtttcccaacaataaaaaacacacacataaaatat 860  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7050894 cctctcgctggcctcatccttccacttttccattaatggtacctcaccaactatttcacattcttgtttcccaacaataaaaaacacacacataaaatat 7050795  T
Q  861 gtttcttctttttcatcttctaattccagacaatataattcttattcaccccatatccaacatttttgtttccttattgtattcaaaagggttacgtgac 960  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  7050794 gtttcttctttttcatcttctaattccagacaatataatttttattcaccccgtatccaacatttttgtttccttattgtattcagaagggttacgtgac 7050695  T
Q  961 ttatggcatcaacct 975  Q
    |||||||||||||||    
T  7050694 ttatggcatcaacct 7050680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 622 - 975
Target Start/End: Complemental strand, 32558863 - 32558504
Alignment:
Q  622 ttaaatggtggattctagggtgaaccatcaaataagtgattcatcggtggatcattttgagcaatagttgagagtcattggattcatcacactcgtaaat 721  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||    
T  32558863 ttaaatggtggattccagggtgaaccatcaaataagtgattcaccggtggaccattttgagcaatagttgagagccattggattcatcgcactcgtaaat 32558764  T
Q  722 tctacca-------cctacactagatcannnnnnnccctcttcctccctctcgctggcctcatccttccacttttccattaatggtacctcaccaactat 814  Q
    |||||||       ||||||||||||||       ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32558763 tctaccatacaccacctacactagatcatttttt-ccctcttcctccctctcgctggcttcatccttccacttttccattaatggtacctcaccaactat 32558665  T
Q  815 ttcacattcttgtttcccaacaataaaaaacacacacataaaatatgtttcttctttttcatcttctaattccagacaatataattcttattcaccccat 914  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  32558664 ttcacattcttgtttcccaacaataaaaaacacacacataaaatatatttcttctttttcatcttctaatttcagacaatataattcttattcaccccgt 32558565  T
Q  915 atccaacatttttgtttccttattgtattcaaaagggttacgtgacttatggcatcaacct 975  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  32558564 atccaacatttttgtttccttattgtattcagaagggttacgtgacttattgcatcaacct 32558504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 628 - 975
Target Start/End: Original strand, 52717122 - 52717476
Alignment:
Q  628 ggtggattctagggtgaaccatcaaataagtgattcatcggtggatcattttgagcaatagttgagagtcattggattcatcacactcgtaaattctacc 727  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| | |||||| |||||    
T  52717122 ggtggattctagggtgaaccatcaaataactgattcaccggtggaccattttgagcaatagttgagagccattggattcatcacatttgtaaatcctacc 52717221  T
Q  728 a-------cctacactagatcannnnnnnccctcttcctccct-ctcgctggcctcatccttccacttttccattaatggtacctcaccaactatttcac 819  Q
    |       ||||||||||||||       |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  52717222 atacaccacctacactagatcatttttt-ccctcttcctcccttctcgctggcctcatccttccacttttgcattaatggtacctcaccaactatttcac 52717320  T
Q  820 attcttgtttcccaacaataaaaaacacacacataaaatatgtttcttctttttcatcttctaattccagacaatataattcttattcaccccatatcca 919  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |    
T  52717321 attcatgtttcccaacaataaaaaacacacacataaaatatatttcttctttttcatcttctaattccagacaatataattcttattcacctcgtatcta 52717420  T
Q  920 acatttttgtttccttattgtattcaaaagggttacgtgacttatggcatcaacct 975  Q
    |||||||||||||||||||||||||| |||||||| |||| ||||| |||||||||    
T  52717421 acatttttgtttccttattgtattcagaagggttaagtgatttatgacatcaacct 52717476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 278 - 399
Target Start/End: Complemental strand, 7051385 - 7051264
Alignment:
Q  278 tgtaatggatcaaattgtaaccgagataattgttgctattgtattgaatatgaacaatcaattcaactcccagtgtataaactaaggaggaataacaacc 377  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||| ||||| |||||||||||    
T  7051385 tgtaatggatcaaattgtaacagagataattgttgctattgcattgaatatgaacaatcaattcaactcccacagtataaacaaaggacgaataacaacc 7051286  T
Q  378 aatttgcaagtaaaataacaat 399  Q
    ||||||||||||||||||||||    
T  7051285 aatttgcaagtaaaataacaat 7051264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 278 - 396
Target Start/End: Complemental strand, 52099230 - 52099114
Alignment:
Q  278 tgtaatggatcaaattgtaaccgagataattgttgctattgtattgaatatgaacaatcaattcaactcccagtgtataaactaaggaggaataacaacc 377  Q
    |||||||||||||||| |||   ||| |||||||||||||||||||| | |||||||| ||| ||||||| |||||||||||||||||||||| ||||||    
T  52099230 tgtaatggatcaaattataatgaagacaattgttgctattgtattgatt-tgaacaatgaatccaactcctagtgtataaactaaggaggaat-acaacc 52099133  T
Q  378 aatttgcaagtaaaataac 396  Q
    |||| ||||||||||||||    
T  52099132 aattagcaagtaaaataac 52099114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 474 - 537
Target Start/End: Original strand, 30174410 - 30174474
Alignment:
Q  474 tttccatccttatttccttggattt-ctcttatttataagggtccatattcctttttcccatatt 537  Q
    ||||||| ||||||||||||| ||| ||||||||||||||| |||||||||||| ||||||||||    
T  30174410 tttccatgcttatttccttggcttttctcttatttataaggatccatattccttattcccatatt 30174474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 628 - 672
Target Start/End: Original strand, 53343105 - 53343149
Alignment:
Q  628 ggtggattctagggtgaaccatcaaataagtgattcatcggtgga 672  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||    
T  53343105 ggtggattctaggatgaaccatcaaataagtggttcatcggtgga 53343149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 626 - 672
Target Start/End: Complemental strand, 25694912 - 25694866
Alignment:
Q  626 atggtggattctagggtgaaccatcaaataagtgattcatcggtgga 672  Q
    |||||||||||||| ||||||||||| ||||||| ||||||||||||    
T  25694912 atggtggattctagagtgaaccatcatataagtggttcatcggtgga 25694866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 629 - 678
Target Start/End: Original strand, 45781551 - 45781600
Alignment:
Q  629 gtggattctagggtgaaccatcaaataagtgattcatcggtggatcattt 678  Q
    ||||||||||||||||||||||||| || || |||| ||||||| |||||    
T  45781551 gtggattctagggtgaaccatcaaacaaatggttcaccggtggaccattt 45781600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 399
Target Start/End: Original strand, 17224797 - 17225180
Alignment:
Q  16 tttcaaagagagaatacataaatcatttggtttttctgatatttgaggttcagaaaatggttaaagagagtaattcgaataagatttaaggtgcttctat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17224797 tttcaaagagagaatacataaatcatttggtttttctgatatttgaggttcagaaaatggttaaagagagtaattcgaataagatttaaggtgcttctat 17224896  T
Q  116 ttgagttaaatatggtgctgatggggaatgatgggtaggataagggaaaatattataatgagtggaggggatataggaaagactttgagggacaagggag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17224897 ttgagttaaatatggtgctgatggggaatgatgggtaggataagggaaaatattataatgagtggaggggatataggaaagactttgagggacaagggag 17224996  T
Q  216 aggtagaaaagaaataacattgtgagatgaggaagcctatcctaaagctggaactgaggaaatgtaatggatcaaattgtaaccgagataattgttgcta 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17224997 aggtagaaaagaaataacattgtgagatgaggaagcctatcctaaagctggaactgaggaaatgtaatggatcaaattgtaaccgagataattgttgcta 17225096  T
Q  316 ttgtattgaatatgaacaatcaattcaactcccagtgtataaactaaggaggaataacaaccaatttgcaagtaaaataacaat 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17225097 ttgtattgaatatgaacaatcaattcaactcccagtgtataaactaaggaggaataacaaccaatttgcaagtaaaataacaat 17225180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 461 - 543
Target Start/End: Original strand, 17225242 - 17225324
Alignment:
Q  461 tttcatcacatattttccatccttatttccttgg-atttctcttatttataagggtccatattcctttttcccatattacccct 543  Q
    ||||||||||||| |||||| |||| ||||||||  |||||||||||||||||||||| |||| || ||||||||||| |||||    
T  17225242 tttcatcacatatcttccatgcttacttccttggcttttctcttatttataagggtcc-tatttctatttcccatattgcccct 17225324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 461 - 543
Target Start/End: Original strand, 5373884 - 5373966
Alignment:
Q  461 tttcatcacatattttccatccttatttccttggattt-ctcttatttataagggtccatattcctttttcccatattacccct 543  Q
    |||||||||| ||||| ||| ||||||||||||  ||| ||||||||||||||||||| |||| || ||||||||||| |||||    
T  5373884 tttcatcacacatttttcatgcttatttccttgacttttctcttatttataagggtcc-tatttctatttcccatattgcccct 5373966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 482 - 567
Target Start/End: Original strand, 40225492 - 40225578
Alignment:
Q  482 cttatttccttggattt-ctcttatttataagggtccatattcctttttcccatattaccccttccagttccatgactcattacaac 567  Q
    ||||||||||||| ||| ||| ||||||| ||||||||||||||| ||||||||| | ||||||| |  || | |||||||||||||    
T  40225492 cttatttccttggcttttctcatatttattagggtccatattcctatttcccataatgccccttctaactctaagactcattacaac 40225578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 630 - 678
Target Start/End: Complemental strand, 51282139 - 51282091
Alignment:
Q  630 tggattctagggtgaaccatcaaataagtgattcatcggtggatcattt 678  Q
    |||||||||||||||||||||||| ||||| |||| ||||||| |||||    
T  51282139 tggattctagggtgaaccatcaaacaagtggttcaccggtggaccattt 51282091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 630 - 672
Target Start/End: Complemental strand, 21838295 - 21838253
Alignment:
Q  630 tggattctagggtgaaccatcaaataagtgattcatcggtgga 672  Q
    ||||||||||| ||||||||||| |||||| ||||||||||||    
T  21838295 tggattctaggatgaaccatcaattaagtggttcatcggtgga 21838253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 213; Significance: 1e-116; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 655 - 972
Target Start/End: Original strand, 8641339 - 8641661
Alignment:
Q  655 aagtgattcatcggtggatcattttgagcaatagttgagagtcattggattcatcacactcgtaaattctacca-------cctacactagatcannnnn 747  Q
    |||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||       ||||||||||||||         
T  8641339 aagtgattcaccgatggatcattttgagcaatagttgagagccattggattcatcacactcgtaaatcctaccatacaccacctacactagatcattttt 8641438  T
Q  748 nnccctcttcctccctctcgctggcctcatccttccacttttccattaatggtacctcaccaactatttcacattcttgtttcccaacaataaaaaacac 847  Q
      |||||||||||||||| ||| |||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8641439 t-ccctcttcctccctcttgctagcctcatccttccatttttccattaata-tacctcaccaactatttcacattcttgtttcccaataataaaaaacac 8641536  T
Q  848 acacataaaatatgtttcttctttttcatcttctaattccagacaatataattcttattcaccccatatccaacatttttgtttccttattgtattcaaa 947  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  8641537 acacataaaatatgtttcttctttttcatcttctaatttcagacaatataattcttattcaccctatatccaacatttttgtttccttattgtattcaga 8641636  T
Q  948 agggttacgtgacttatggcatcaa 972  Q
    |||||||||||||||||| ||||||    
T  8641637 agggttacgtgacttatgacatcaa 8641661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 278 - 399
Target Start/End: Original strand, 11398080 - 11398200
Alignment:
Q  278 tgtaatggatcaaattgtaaccgagataattgttgctattgtattgaatatgaacaatcaattcaactcccagtgtataaactaaggaggaataacaacc 377  Q
    ||||||| || ||||||||||  |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11398080 tgtaatgcattaaattgtaacaaagataattgttgctattgtatt-aatttgaacaatcaattcaactcccagtgtataaactaaggaggaataacaacc 11398178  T
Q  378 aatttgcaagtaaaataacaat 399  Q
    ||||||||||||||||||||||    
T  11398179 aatttgcaagtaaaataacaat 11398200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 278 - 395
Target Start/End: Complemental strand, 18136676 - 18136560
Alignment:
Q  278 tgtaatggatcaaattgtaaccgagataattgttgctattgtattgaatatgaacaatcaattcaactcccagtgtataaactaaggaggaataacaacc 377  Q
    |||||||||||||||| |||   ||| |||||||||||||| ||| ||| |||||||| |||  |||||||||||| |||||||||||||||| ||||||    
T  18136676 tgtaatggatcaaattataatgaagacaattgttgctattgcatttaatgtgaacaatgaatcaaactcccagtgtgtaaactaaggaggaat-acaacc 18136578  T
Q  378 aatttgcaagtaaaataa 395  Q
    |||| |||||||||||||    
T  18136577 aattagcaagtaaaataa 18136560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 276 - 363
Target Start/End: Complemental strand, 6904664 - 6904575
Alignment:
Q  276 aatgtaatggatcaaattgtaaccgagataattgttgctattgtattgaatatga--acaatcaattcaactcccagtgtataaactaag 363  Q
    ||||||||||||||||||||||   ||| || |||||||||||||||||||||||  ||||||||| ||| ||||||||||||| |||||    
T  6904664 aatgtaatggatcaaattgtaatgaagacaaatgttgctattgtattgaatatgatcacaatcaatccaattcccagtgtataagctaag 6904575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 461 - 535
Target Start/End: Original strand, 11398268 - 11398344
Alignment:
Q  461 tttcatcacatatttt-ccatccttatttccttggattt-ctcttatttataagggtccatattcctttttcccata 535  Q
    |||||||||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||||||| ||| |||||    
T  11398268 tttcatcacatatttttccatccttatttccttggcttttctcatatttataagggtccatattcctattttccata 11398344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 771 - 873
Target Start/End: Original strand, 45500135 - 45500230
Alignment:
Q  771 gcctcatccttccacttttccattaatggtacctcaccaactatttcacattcttgtttcccaacaataaaaaacacacacataaaatatgtttcttctt 870  Q
    ||||| ||||||||||| |||||| ||||||| ||||||||| |||       ||||||||||||||||||| ||||||||||||||||||| |||||||    
T  45500135 gcctcttccttccacttctccattgatggtacatcaccaactctttt------ttgtttcccaacaataaaa-acacacacataaaatatgtctcttctt 45500227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 464 - 565
Target Start/End: Complemental strand, 18136515 - 18136414
Alignment:
Q  464 catcacatattttccatccttatttccttggatttctct--tatttataagggtccatattcctttttcccatattaccccttccagttccatgactcat 561  Q
    ||||||||||||  ||| ||||||||||||| ||| |||  ||||||||||||||||||||||| ||||||||| | ||||||| |  || | |||||||    
T  18136515 catcacatattt--catgcttatttccttggctttttctcatatttataagggtccatattcctatttcccataatgccccttctaactctaagactcat 18136418  T
Q  562 taca 565  Q
    ||||    
T  18136417 taca 18136414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 482 - 545
Target Start/End: Complemental strand, 52935234 - 52935170
Alignment:
Q  482 cttatttccttggattt-ctcttatttataagggtccatattcctttttcccatattaccccttc 545  Q
    ||||||||||||| ||| ||| ||||||||||||||||||||||| ||||||||| | |||||||    
T  52935234 cttatttccttggcttttctcatatttataagggtccatattcctatttcccataatgccccttc 52935170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 482 - 545
Target Start/End: Complemental strand, 52942869 - 52942805
Alignment:
Q  482 cttatttccttggattt-ctcttatttataagggtccatattcctttttcccatattaccccttc 545  Q
    ||||||||||||| ||| ||| ||||||||||||||||||||||| ||||||||| | |||||||    
T  52942869 cttatttccttggcttttctcatatttataagggtccatattcctatttcccataatgccccttc 52942805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 482 - 565
Target Start/End: Complemental strand, 52946277 - 52946193
Alignment:
Q  482 cttatttccttggattt-ctcttatttataagggtccatattcctttttcccatattaccccttccagttccatgactcattaca 565  Q
    ||||||||||||| ||| ||| ||||||||||||||||||||||| ||||||||| | ||||||| |  || | |||||||||||    
T  52946277 cttatttccttggcttttctcatatttataagggtccatattcctatttcccataatgccccttctaactctaagactcattaca 52946193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 496 - 535
Target Start/End: Original strand, 31230366 - 31230405
Alignment:
Q  496 tttctcttatttataagggtccatattcctttttcccata 535  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  31230366 tttctcatatttataagggtccatattcctatttcccata 31230405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 708
Target Start/End: Original strand, 45499984 - 45500055
Alignment:
Q  637 tagggtgaaccatcaaataagtgattcatcggtggatcattttgagcaatagttgagagtcattggattcat 708  Q
    ||||||||||||||||||||||| |||| ||||||| ||   |||| |||| ||||||| |||| |||||||    
T  45499984 tagggtgaaccatcaaataagtggttcaccggtggaccaccgtgagtaataattgagagccattagattcat 45500055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 6e-49; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 276 - 399
Target Start/End: Complemental strand, 42735560 - 42735437
Alignment:
Q  276 aatgtaatggatcaaattgtaaccgagataattgttgctattgtattgaatatgaacaatcaattcaactcccagtgtataaactaaggaggaataacaa 375  Q
    |||||||||||||||| |||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  42735560 aatgtaatggatcaaagtgtaacagagataattgtttctattgtattgaatatgaactatcaattcaactcccagtgtataaactaaggaggaataacag 42735461  T
Q  376 ccaatttgcaagtaaaataacaat 399  Q
    |||||||||||||||| |||||||    
T  42735460 ccaatttgcaagtaaactaacaat 42735437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 461 - 545
Target Start/End: Complemental strand, 42735367 - 42735280
Alignment:
Q  461 tttcatcacatattttccatccttatttccttg-gatttctcttatttata--agggtccatattcctttttcccatattaccccttc 545  Q
    |||||||||||||||| ||| ||||||||||||   |||||| ||||||||  ||||||||||||||| ||||||||| | |||||||    
T  42735367 tttcatcacatatttttcatgcttatttccttgccttttctcatatttataagagggtccatattcctatttcccataatgccccttc 42735280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 628 - 678
Target Start/End: Original strand, 1521649 - 1521699
Alignment:
Q  628 ggtggattctagggtgaaccatcaaataagtgattcatcggtggatcattt 678  Q
    |||||||||||||||||||||||||| ||||| |||| ||||||| |||||    
T  1521649 ggtggattctagggtgaaccatcaaacaagtggttcaccggtggaccattt 1521699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 628 - 678
Target Start/End: Complemental strand, 1522441 - 1522391
Alignment:
Q  628 ggtggattctagggtgaaccatcaaataagtgattcatcggtggatcattt 678  Q
    ||||||||||||| |||||||||||| ||||| |||| ||||||| |||||    
T  1522441 ggtggattctaggatgaaccatcaaacaagtggttcaccggtggaccattt 1522391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 9e-42; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 280 - 399
Target Start/End: Complemental strand, 47762346 - 47762228
Alignment:
Q  280 taatggatcaaattgtaaccgagataattgttgctattgtattgaatatgaacaatcaattcaactcccagtgtataaactaaggaggaataacaaccaa 379  Q
    ||||||||||||||||||  ||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||| |||||||||||     
T  47762346 taatggatcaaattgtaaaagagataattgttgctattgtatt-aatttgaacaatcaattcaactcccaatgtataaactaaggagaaataacaaccat 47762248  T
Q  380 tttgcaagtaaaataacaat 399  Q
    ||||||||||||||||||||    
T  47762247 tttgcaagtaaaataacaat 47762228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 331 - 391
Target Start/End: Original strand, 20290530 - 20290590
Alignment:
Q  331 acaatcaattcaactcccagtgtataaactaaggaggaataacaaccaatttgcaagtaaa 391  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20290530 acaatcaatccaactcccagtgtataaactaaggaggaataacaaccaatttgcaagtaaa 20290590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 461 - 565
Target Start/End: Complemental strand, 47762158 - 47762053
Alignment:
Q  461 tttcatcacatattttccatccttatttccttggattt-ctcttatttataagggtccatattcctttttcccatattaccccttccagttccatgactc 559  Q
    ||||||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||||||||| ||| ||||| | ||||||| |  || | |||||    
T  47762158 tttcatcacatattttcaatccttatttccttggcttttctcatatttataagggtccatattcctattttccataatgccccttctaactctaagactc 47762059  T
Q  560 attaca 565  Q
    ||||||    
T  47762058 attaca 47762053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 461 - 538
Target Start/End: Original strand, 20290674 - 20290752
Alignment:
Q  461 tttcatcacatattttccatc-cttatttccttggatttctcttatttataagggtccatattcctttttcccatatta 538  Q
    ||||||||||||||||||||  ||||||| ||||| |||||||||||||||||||||||||||| | ||| ||||||||    
T  20290674 tttcatcacatattttccatgtcttatttgcttggctttctcttatttataagggtccatattcatatttaccatatta 20290752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 22297945 - 22297900
Alignment:
Q  627 tggtggattctagggtgaaccatcaaataagtgattcatcggtgga 672  Q
    ||||||||||||| |||||||||||| |||||| ||||||||||||    
T  22297945 tggtggattctagagtgaaccatcaattaagtggttcatcggtgga 22297900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 3e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 112 - 243
Target Start/End: Complemental strand, 39948428 - 39948290
Alignment:
Q  112 ctatttgagttaaatatggtgctgatggggaatgatgggtagga-------taagggaaaatattataatgagtggaggggatataggaaagactttgag 204  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||||       |||||||||||||   |||||||  ||||||||||| |||| |||||||    
T  39948428 ctatttgagttaattatggtgctgatgaggaatgatgagtaggagaaaaaataagggaaaatatgtaaatgagtacaggggatatagtaaagcctttgag 39948329  T
Q  205 ggacaagggagaggtagaaaagaaataacattgtgagat 243  Q
    |||| | ||| ||||||||| ||||||||||||||||||    
T  39948328 ggacgacggaaaggtagaaatgaaataacattgtgagat 39948290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 278 - 392
Target Start/End: Complemental strand, 6142146 - 6142032
Alignment:
Q  278 tgtaatggatcaaattgtaaccgagataattgttgctattgtattgaatatgaacaatcaattcaactcccagtgtataaactaaggaggaataacaacc 377  Q
    |||||||||||||||| |||   ||| |||||||||||||| | ||||||||||| || ||| ||||||||||||||||||| ||||||||||| | |||    
T  6142146 tgtaatggatcaaattataataaagacaattgttgctattgcactgaatatgaacgatgaatccaactcccagtgtataaacaaaggaggaatatctacc 6142047  T
Q  378 aatttgcaagtaaaa 392  Q
    ||||| | |||||||    
T  6142046 aatttactagtaaaa 6142032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 628 - 678
Target Start/End: Complemental strand, 14707076 - 14707026
Alignment:
Q  628 ggtggattctagggtgaaccatcaaataagtgattcatcggtggatcattt 678  Q
    |||||||||||||||||||||||||| ||||| |||| |||||| ||||||    
T  14707076 ggtggattctagggtgaaccatcaaacaagtggttcaccggtggttcattt 14707026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 623 - 672
Target Start/End: Complemental strand, 40600710 - 40600661
Alignment:
Q  623 taaatggtggattctagggtgaaccatcaaataagtgattcatcggtgga 672  Q
    |||| |||||||| |||| |||||||||||||||||| ||||||||||||    
T  40600710 taaacggtggattttaggatgaaccatcaaataagtggttcatcggtgga 40600661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 628 - 678
Target Start/End: Complemental strand, 6697417 - 6697367
Alignment:
Q  628 ggtggattctagggtgaaccatcaaataagtgattcatcggtggatcattt 678  Q
    |||||||||||||||||||||||||||||||| |||| ||| ||| |||||    
T  6697417 ggtggattctagggtgaaccatcaaataagtggttcaccggcggaccattt 6697367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 464 - 565
Target Start/End: Complemental strand, 10548274 - 10548172
Alignment:
Q  464 catcacatattttccatccttatttccttggattt-ctcttatttataagggtccatattcctttttcccatattaccccttccagttccatgactcatt 562  Q
    ||||||| || |||||| ||||||||||||| ||| ||| ||||||||| ||||||||||||| ||| ||||| | ||||||| |  || | ||||||||    
T  10548274 catcacacatattccatacttatttccttggcttttctcatatttataaaggtccatattcctattttccataatgccccttctaactctaagactcatt 10548175  T
Q  563 aca 565  Q
    |||    
T  10548174 aca 10548172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 628 - 677
Target Start/End: Original strand, 6695787 - 6695836
Alignment:
Q  628 ggtggattctagggtgaaccatcaaataagtgattcatcggtggatcatt 677  Q
    |||| ||||||||||||||||||||||||||| |||| ||||||| ||||    
T  6695787 ggtgtattctagggtgaaccatcaaataagtggttcaccggtggaccatt 6695836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 628 - 672
Target Start/End: Original strand, 38558946 - 38558990
Alignment:
Q  628 ggtggattctagggtgaaccatcaaataagtgattcatcggtgga 672  Q
    ||||||||||||| |||||||| ||||||||| ||||||||||||    
T  38558946 ggtggattctaggatgaaccattaaataagtggttcatcggtgga 38558990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 461 - 543
Target Start/End: Original strand, 20319530 - 20319612
Alignment:
Q  461 tttcatcacatattttccatccttatttccttgga--tttctcttatttataagggtccatattcctttttcccatattacccct 543  Q
    |||||||||| || || ||| |||||||||| |||  |||||||||||||||||||||| |||| || ||||||||||| |||||    
T  20319530 tttcatcacacatatttcatgcttatttcct-ggacttttctcttatttataagggtcc-tatttctatttcccatattgcccct 20319612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 628 - 678
Target Start/End: Complemental strand, 7683563 - 7683513
Alignment:
Q  628 ggtggattctagggtgaaccatcaaataagtgattcatcggtggatcattt 678  Q
    |||||||||||||||||| ||||||| || || |||| |||||||||||||    
T  7683563 ggtggattctagggtgaatcatcaaacaaatggttcaccggtggatcattt 7683513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 464 - 565
Target Start/End: Original strand, 5017 - 5121
Alignment:
Q  464 catcacatattttccatccttatttccttggattt-ctcttatttata--agggtccatattcctttttcccatattaccccttccagttccatgactca 560  Q
    ||||||| || || ||| ||||||||||||| ||| ||| ||||||||  ||||||||||||||| ||||||||| | ||||||| |  || | ||||||    
T  5017 catcacacatatttcatgcttatttccttggcttttctcatatttatataagggtccatattcctatttcccataatgccccttctaactctaagactca 5116  T
Q  561 ttaca 565  Q
    |||||    
T  5117 ttaca 5121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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