View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7631_high_5 (Length: 259)
Name: NF7631_high_5
Description: NF7631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7631_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 47 - 257
Target Start/End: Complemental strand, 39290777 - 39290567
Alignment:
| Q |
47 |
aatttaaaacatactaatcgctcagtaaaggacaaaataccaggcggcattaggatcatcatagtcttgacatatagaaggctcattcttggaacgtttc |
146 |
Q |
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| T |
39290777 |
aatttaaaacatactaatcgctcagtaaaggaaaaaataccaggcggcattaggatcatcatagtcttgacatatagaaggctcattcttggaacgtttc |
39290678 |
T |
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| Q |
147 |
tcataacactcattagaagttggcttcttgtatacagctataccaactttattaagtttatccctgctgatagacaccacttcccaacacattgcttttg |
246 |
Q |
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| T |
39290677 |
tcataacactcattagaagttggcttcttgtatacagctataccaactttattaagtttatccctgctgatagacaccacttcccaacacattgcttttg |
39290578 |
T |
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| Q |
247 |
ttagagccttc |
257 |
Q |
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||||||||||| |
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| T |
39290577 |
ttagagccttc |
39290567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 128 - 257
Target Start/End: Complemental strand, 22861273 - 22861140
Alignment:
| Q |
128 |
ctcattcttggaacgtttctcataacactcattagaagttggcttcttgtatacagctataccaactttattaagtttatccctgctg----atagacac |
223 |
Q |
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||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||| |
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| T |
22861273 |
ctcattctttgaaagtttctcataacactccttagaagttggcttcttgtatacaactataccaactccattaagtttatccctgctgataaatagacac |
22861174 |
T |
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| Q |
224 |
cacttcccaacacattgcttttgttagagccttc |
257 |
Q |
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| T |
22861173 |
cacttctcaacacattacttttgttagagccttc |
22861140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 250
Target Start/End: Complemental strand, 44102922 - 44102754
Alignment:
| Q |
82 |
aataccaggcggcattaggatcatcatagtcttgacatatagaaggctcattcttggaacgtttctcataacactcattagaagttggcttcttgtatac |
181 |
Q |
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||||||| || ||||| ||||||||| | | |||||| | | |||||||||||| || |||| ||||||||| ||||| || |||||||||||||| |
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| T |
44102922 |
aataccatgctgcattgggatcatcagatttttgacacagtggaggctcattctttgatcgttgctcataacaatcattggatagtggcttcttgtatat |
44102823 |
T |
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| Q |
182 |
agctataccaactttattaagtttatccctgctgatagacaccacttcccaacacattgcttttgttag |
250 |
Q |
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|||| ||||||| ||||| || |||| ||||||| || || | |||||| || |||| ||||||||| |
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| T |
44102822 |
ggctacaccaactccattaacttgatccttgctgattgaaacaagttcccagcatattgattttgttag |
44102754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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