View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7631_low_2 (Length: 589)

Name: NF7631_low_2
Description: NF7631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7631_low_2
NF7631_low_2
[»] chr1 (18 HSPs)
chr1 (12-469)||(49653546-49654030)
chr1 (252-469)||(47112949-47113169)
chr1 (252-469)||(36142971-36143190)
chr1 (277-469)||(35123034-35123224)
chr1 (324-368)||(29022485-29022529)
chr1 (317-362)||(1524080-1524125)
chr1 (319-368)||(24326655-24326704)
chr1 (319-368)||(24332250-24332299)
chr1 (316-368)||(16659840-16659892)
chr1 (316-368)||(29021652-29021704)
chr1 (324-368)||(36142188-36142232)
chr1 (316-368)||(38658812-38658864)
chr1 (316-356)||(49964093-49964133)
chr1 (316-368)||(50124537-50124589)
chr1 (316-368)||(52751499-52751551)
chr1 (328-366)||(7964196-7964234)
chr1 (328-366)||(7965447-7965485)
chr1 (324-357)||(24508288-24508321)
[»] chr8 (4 HSPs)
chr8 (252-469)||(13462984-13463203)
chr8 (277-368)||(44553159-44553250)
chr8 (316-368)||(22594388-22594440)
chr8 (316-357)||(16906411-16906452)
[»] chr5 (18 HSPs)
chr5 (251-469)||(23083415-23083636)
chr5 (252-451)||(6793770-6793971)
chr5 (316-368)||(14347469-14347521)
chr5 (316-368)||(23082608-23082660)
chr5 (316-368)||(24041808-24041860)
chr5 (316-368)||(24042615-24042667)
chr5 (316-368)||(38384938-38384990)
chr5 (252-368)||(30645663-30645782)
chr5 (277-368)||(13823731-13823822)
chr5 (316-368)||(6794715-6794767)
chr5 (316-368)||(13824582-13824634)
chr5 (316-368)||(28905393-28905445)
chr5 (316-368)||(28941788-28941840)
chr5 (316-368)||(42766887-42766939)
chr5 (316-368)||(42767629-42767681)
chr5 (252-368)||(19797667-19797786)
chr5 (316-357)||(38385748-38385789)
chr5 (252-303)||(30645108-30645162)
[»] chr2 (16 HSPs)
chr2 (251-469)||(40468048-40468269)
chr2 (252-469)||(19297530-19297750)
chr2 (252-469)||(28190321-28190543)
chr2 (316-469)||(8029036-8029188)
chr2 (252-451)||(20686526-20686732)
chr2 (252-368)||(10709300-10709419)
chr2 (316-368)||(8029945-8029997)
chr2 (316-368)||(28189517-28189569)
chr2 (319-368)||(29519231-29519280)
chr2 (316-368)||(16330774-16330826)
chr2 (316-368)||(19298505-19298557)
chr2 (316-368)||(29519982-29520034)
chr2 (316-368)||(40469033-40469085)
chr2 (316-367)||(16329815-16329866)
chr2 (319-368)||(8885731-8885780)
chr2 (316-368)||(12601308-12601360)
[»] chr7 (13 HSPs)
chr7 (252-469)||(30766519-30766739)
chr7 (251-469)||(17279278-17279499)
chr7 (252-368)||(25445015-25445133)
chr7 (316-368)||(17278469-17278521)
chr7 (316-368)||(30765738-30765790)
chr7 (316-368)||(42753983-42754035)
chr7 (316-362)||(16956000-16956046)
chr7 (316-357)||(17236134-17236175)
chr7 (316-368)||(18297224-18297276)
chr7 (316-368)||(25443067-25443119)
chr7 (316-368)||(30474346-30474398)
chr7 (413-460)||(36986311-36986356)
chr7 (328-368)||(14681979-14682019)
[»] chr4 (18 HSPs)
chr4 (252-469)||(40681337-40681556)
chr4 (316-469)||(9086363-9086515)
chr4 (277-368)||(26281186-26281277)
chr4 (316-368)||(11816690-11816742)
chr4 (277-357)||(44182593-44182673)
chr4 (316-362)||(45044438-45044484)
chr4 (277-368)||(44183742-44183833)
chr4 (316-357)||(53596096-53596137)
chr4 (316-368)||(11815931-11815983)
chr4 (316-368)||(40680535-40680587)
chr4 (324-368)||(50282868-50282912)
chr4 (251-305)||(9086289-9086346)
chr4 (399-454)||(12096547-12096601)
chr4 (338-376)||(9010762-9010800)
chr4 (252-347)||(31081660-31081756)
chr4 (316-357)||(2734867-2734908)
chr4 (319-368)||(9087296-9087345)
chr4 (316-356)||(43630270-43630310)
[»] chr6 (9 HSPs)
chr6 (252-469)||(12260449-12260668)
chr6 (316-469)||(27129715-27129867)
chr6 (252-469)||(20745588-20745808)
chr6 (316-368)||(12261426-12261478)
chr6 (316-368)||(16146147-16146199)
chr6 (316-357)||(10998794-10998835)
chr6 (424-461)||(17163884-17163921)
chr6 (324-368)||(901495-901539)
chr6 (324-368)||(902690-902734)
[»] chr3 (12 HSPs)
chr3 (252-469)||(32304235-32304454)
chr3 (252-451)||(34819474-34819675)
chr3 (316-469)||(42540233-42540384)
chr3 (252-451)||(17509467-17509670)
chr3 (316-368)||(34817401-34817453)
chr3 (316-368)||(17514645-17514697)
chr3 (316-368)||(32305206-32305258)
chr3 (252-357)||(52254306-52254414)
chr3 (487-517)||(34819430-34819460)
chr3 (489-517)||(17509686-17509714)
chr3 (316-368)||(42541136-42541188)
chr3 (316-368)||(54831925-54831977)
[»] scaffold0202 (2 HSPs)
scaffold0202 (316-469)||(21298-21450)
scaffold0202 (487-517)||(21468-21498)
[»] scaffold0042 (1 HSPs)
scaffold0042 (424-469)||(91313-91358)
[»] scaffold0192 (1 HSPs)
scaffold0192 (316-368)||(14641-14693)


Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 12 - 469
Target Start/End: Complemental strand, 49654030 - 49653546
Alignment:
Q  12 tgggacaaatatggtctaagtctaactttagttgtttaaaaatataaatcacttgatatatgacatttatttacgtaagtaacatgtatttaaaaaagta 111  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49654030 tgggacaaacatggtctaagtctaactttagttgtttaaaaatataaatcacttgatatatgacatttatttacgtaagtaacatgtatttaaaaaagta 49653931  T
Q  112 gttgatttgatgataacaatcaatttgttgttttttaaaactattcttatagttcttgattttcttttttctgttatgcatatttatgtacgaagttttc 211  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  49653930 gttgatttgatgataacagtcaatttgttgttttttaaaactattcgtatagttcttgattttcttttttctgccatgcatatttatgtacgaagttttc 49653831  T
Q  212 atcaatactaagattaattttactgaagnnnnnnnnngatttaattgctcttttcgtcccttaagttatttggtattgttttggtccct----------- 300  Q
    ||||||||||||||||| |||||| |||         ||||| |||| | |||||||||||||||||||||||||||||||||||||||               
T  49653830 atcaatactaagattaactttactcaagaaaaaaaaagatttgattgtttttttcgtcccttaagttatttggtattgttttggtcccttaaattggtcc 49653731  T
Q  301 --taagtnnnnnnnnnnttgtttgggtactttatctttatctccgttacatgttttggttccttccgttagttttaatcnnnnnnntgttaactgctatc 398  Q
      ||| |          ||||||  ||||||||| |||||||||||||||||||||||||||||| |||||||||||||       ||||||||| ||||    
T  49653730 cttaaataaaaaaaaaattgtttaagtactttatatttatctccgttacatgttttggttccttctgttagttttaatcaaaaaaatgttaactgttatc 49653631  T
Q  399 cacgtatcattt--------------tagcattggctgaaaaacttaatttattttcttcatcttctccacttaaattcttcatc 469  Q
    ||||| ||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49653630 cacgtgtcatttagcattggctgatttagcattggctgaaaaacttaatttattttcttcatcttctccacttaaattcttcatc 49653546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 252 - 469
Target Start/End: Complemental strand, 47113169 - 47112949
Alignment:
Q  252 ttaattgctcttttcgtcccttaagttatt---tggtattgttttggtcccttaagtnnnnnnnnnnttgtttgggtactttatctttatctccgttaca 348  Q
    ||||||||||||||||||||||||||||||   |||||| | |||| ||||||||||          || ||| ||||||||||||||||||||||||||    
T  47113169 ttaattgctcttttcgtcccttaagttattatttggtatcgctttgatcccttaagtaaaaaaaagattattttggtactttatctttatctccgttaca 47113070  T
Q  349 tgttttggttccttccgttagttttaatcnnnnnnntgttaactgctatccacgtatcattttagcattggctgaaaaacttaatttattttcttcatct 448  Q
    ||||||||| |||||||||| |||||||         |||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||    
T  47113069 tgttttggtcccttccgttaattttaataaaaaaaacgttaactgctatccacgtgtcattttgacattggctgaaaaacttaatttattttcttcatct 47112970  T
Q  449 tctccacttaaattcttcatc 469  Q
    |||||||||||||||||||||    
T  47112969 tctccacttaaattcttcatc 47112949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 252 - 469
Target Start/End: Complemental strand, 36143190 - 36142971
Alignment:
Q  252 ttaattgctcttttcgtcccttaagttatt---tggtattgttttggtcccttaagtnnnnnnnnnnttgtttgggtactttatctttatctccgttaca 348  Q
    ||||||||||||||||||||||||||||||   |||||| | |||||||||||||||          |||||| |||| |||||||||||||||||||||    
T  36143190 ttaattgctcttttcgtcccttaagttattatttggtatcgatttggtcccttaagtaaaaaaaagattgttttggtattttatctttatctccgttaca 36143091  T
Q  349 tgttttggttccttccgttagttttaatcnnnnnnntgttaactgctatccacgtatcattttagcattggctgaaaaacttaatttattttcttcatct 448  Q
    ||||||||| | ||||||||||||||||         |||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||| |    
T  36143090 tgttttggtccattccgttagttttaataaaaaaac-gttaactgctatccacgtgtcattttggcattggctaaaaaacttaatttattttcttcattt 36142992  T
Q  449 tctccacttaaattcttcatc 469  Q
    |||||||||||||||||||||    
T  36142991 tctccacttaaattcttcatc 36142971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 277 - 469
Target Start/End: Complemental strand, 35123224 - 35123034
Alignment:
Q  277 ttatttggtattgttttggtcccttaagtnnnnnnnnnnttgtttgggtactttatctttatctccgttacatgttttggttccttccgttagttttaat 376  Q
    |||||||||||  ||||||||||||||||          |||||| |||| ||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  35123224 ttatttggtatcattttggtcccttaagtaaaaaaaagattgttttggtattttatctttatcttcgttacatgttttggtcccttccgttagttttaat 35123125  T
Q  377 cnnnnnnntgttaactgctatccacgtatcattttagcattggctgaaaaacttaatttattttcttcatcttctccacttaaattcttcatc 469  Q
            |  ||| || ||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35123124 aaaaaaaat--taattgttatccacgtgtcattttggcattgactgaaaaacttaatttattttcttcatcttctccacttaaattcttcatc 35123034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 29022529 - 29022485
Alignment:
Q  324 gtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||    
T  29022529 gtactttatctttatctccgttacctgttttggtcccttccgtta 29022485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 317 - 362
Target Start/End: Original strand, 1524080 - 1524125
Alignment:
Q  317 tgtttgggtactttatctttatctccgttacatgttttggttcctt 362  Q
    |||||| ||||||||||||||| |||||||| ||||||||||||||    
T  1524080 tgtttgagtactttatctttatttccgttacctgttttggttcctt 1524125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 319 - 368
Target Start/End: Original strand, 24326655 - 24326704
Alignment:
Q  319 tttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    |||| |||||||||||||||||||||||| | ||||||| ||||||||||    
T  24326655 tttgagtactttatctttatctccgttacctattttggtcccttccgtta 24326704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 319 - 368
Target Start/End: Complemental strand, 24332299 - 24332250
Alignment:
Q  319 tttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    |||| |||||||||||||||||||||||| | ||||||| ||||||||||    
T  24332299 tttgagtactttatctttatctccgttacctattttggtcccttccgtta 24332250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 16659892 - 16659840
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| |||||||||||||||||| ||||| ||||||||| ||||| ||||    
T  16659892 ttgtttgagtactttatctttatctctgttacctgttttggtcccttctgtta 16659840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 29021652 - 29021704
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| |||||||||||||||||| ||||| ||||||||| ||||| ||||    
T  29021652 ttgtttgagtactttatctttatctctgttacctgttttggtcccttctgtta 29021704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 36142188 - 36142232
Alignment:
Q  324 gtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    |||||||||||||||||||||||| ||||||||| | ||||||||    
T  36142188 gtactttatctttatctccgttacctgttttggtcctttccgtta 36142232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 38658864 - 38658812
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| ||||||||| |||||||||||||| ||||||||| ||||| ||||    
T  38658864 ttgtttgagtactttatatttatctccgttacctgttttggtcccttctgtta 38658812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 49964133 - 49964093
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttgg 356  Q
    |||||| ||||||||||||||||||| ||||||||||||||    
T  49964133 ttgttttggtactttatctttatctctgttacatgttttgg 49964093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 50124589 - 50124537
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    |||||||  ||||||||||||||||||||||| ||||||||| | ||||||||    
T  50124589 ttgtttgaatactttatctttatctccgttacctgttttggtcctttccgtta 50124537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 52751551 - 52751499
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| |||||||||||||||||| ||||| |||||| || ||||||||||    
T  52751551 ttgtttgagtactttatctttatctcagttacttgtttttgtcccttccgtta 52751499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 366
Target Start/End: Original strand, 7964196 - 7964234
Alignment:
Q  328 tttatctttatctccgttacatgttttggttccttccgt 366  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  7964196 tttatctttatctccgttacctgttttggtcccttccgt 7964234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 366
Target Start/End: Complemental strand, 7965485 - 7965447
Alignment:
Q  328 tttatctttatctccgttacatgttttggttccttccgt 366  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  7965485 tttatctttatctccgttacctgttttggtcccttccgt 7965447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 24508288 - 24508321
Alignment:
Q  324 gtactttatctttatctccgttacatgttttggt 357  Q
    |||||||||||||||||||||||| |||||||||    
T  24508288 gtactttatctttatctccgttacctgttttggt 24508321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 2e-63; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 252 - 469
Target Start/End: Complemental strand, 13463203 - 13462984
Alignment:
Q  252 ttaattgctcttttcgtcccttaagttatt---tggtattgttttggtcccttaagtnnnnnnnnnnttgtttgggtactttatctttatctccgttaca 348  Q
    ||||||||||||||||||||||||||||||   |||||| | |||||||||||||||          |||||| ||||||||||||||||||||||||||    
T  13463203 ttaattgctcttttcgtcccttaagttattatttggtatcgctttggtcccttaagtaaaaaatagattgttttggtactttatctttatctccgttaca 13463104  T
Q  349 tgttttggttccttccgttagttttaatcnnnnnnntgttaactgctatccacgtatcattttagcattggctgaaaaacttaatttattttcttcatct 448  Q
    ||||||||| |||||||||||||||||||        |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  13463103 tgttttggtcccttccgttagttttaatcaaaaaac-gttaactgctatccacgtgtcattttggcattggctgaaaaacttaatttattttcttcatct 13463005  T
Q  449 tctccacttaaattcttcatc 469  Q
    |||||||||||||||||||||    
T  13463004 tctccacttaaattcttcatc 13462984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 277 - 368
Target Start/End: Original strand, 44553159 - 44553250
Alignment:
Q  277 ttatttggtattgttttggtcccttaagtnnnnnnnnnnttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||||||| ||||||||||||||| |          ||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||    
T  44553159 ttatttggtatcgttttggtcccttaactaaaaaaaagattgtttgagtattttatctttatctccgttacctgttttggtcccttccgtta 44553250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 22594388 - 22594440
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| |||||||||||||||||| ||||| ||||||||| ||||| ||||    
T  22594388 ttgtttgagtactttatctttatctctgttacctgttttggtcccttctgtta 22594440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 357
Target Start/End: Complemental strand, 16906452 - 16906411
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggt 357  Q
    ||||||| ||||||||| |||||||||||||| |||||||||    
T  16906452 ttgtttgagtactttatatttatctccgttacctgttttggt 16906411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 1e-61; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 251 - 469
Target Start/End: Complemental strand, 23083636 - 23083415
Alignment:
Q  251 tttaattgctcttttcgtcccttaagttatt---tggtattgttttggtcccttaagtnnnnnnnnnnttgtttgggtactttatctttatctccgttac 347  Q
    |||||||||||||||||||||||||||||||   |||||| |||||||||||||||||          |||||| ||||||||||||||||||| |||||    
T  23083636 tttaattgctcttttcgtcccttaagttattatttggtatcgttttggtcccttaagtaaaaaaaagattgttttggtactttatctttatctctgttac 23083537  T
Q  348 atgttttggttccttccgttagttttaatcnnnnnnntgttaactgctatccacgtatcattttagcattggctgaaaaacttaatttattttcttcatc 447  Q
    ||||||||||  ||||||||||||||||||        |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  23083536 atgttttggtctcttccgttagttttaatcaaaaaaacgttaactgctatccacgtgtcattttggcattggctgaaaaacttaatttattttcttcatc 23083437  T
Q  448 ttctccacttaaattcttcatc 469  Q
    |||| |||||||||||||||||    
T  23083436 ttcttcacttaaattcttcatc 23083415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 252 - 451
Target Start/End: Original strand, 6793770 - 6793971
Alignment:
Q  252 ttaattgctcttttcgtcccttaagttatt---tggtattgttttggtcccttaagtnnnnnnnnnnttgtttgggtactttatctttatctccgttaca 348  Q
    |||||||||||||| |||||||||||||||   ||||||   |||||||||||||||          |||||| ||||||||||||||||||| ||||||    
T  6793770 ttaattgctctttttgtcccttaagttattatttggtatcactttggtcccttaagtaaaaaaaagattgttttggtactttatctttatctctgttaca 6793869  T
Q  349 tgttttggttccttccgttagttttaatcnnnnnnntgttaactgctatccacgtatcattttagcattggctgaaaaacttaatttattttcttcatct 448  Q
    || |||||| |||||||||||||||| |         ||||| |||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||    
T  6793870 tggtttggtcccttccgttagttttactaaaaaaac-gttaattgctatccacgtgtcattttggcattggctgaaaaacataatttattttcttcatct 6793968  T
Q  449 tct 451  Q
    |||    
T  6793969 tct 6793971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 14347469 - 14347521
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| |||||||||||||||||||||||| ||||||||  ||||||||||    
T  14347469 ttgtttgagtactttatctttatctccgttacctgttttggccccttccgtta 14347521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 23082608 - 23082660
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| |||||||||||| ||||||||||| ||||||||| ||||||||||    
T  23082608 ttgtttgagtactttatcttcatctccgttacctgttttggtcccttccgtta 23082660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 24041808 - 24041860
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||    
T  24041808 ttgtttgagtattttatctttatctccgttacctgttttggtcccttccgtta 24041860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 24042667 - 24042615
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||    
T  24042667 ttgtttgagtattttatctttatctccgttacctgttttggtcccttccgtta 24042615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 38384938 - 38384990
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||    
T  38384938 ttgtttgagtactttatctttatctccgctacctgttttggtcccttccgtta 38384990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 252 - 368
Target Start/End: Complemental strand, 30645782 - 30645663
Alignment:
Q  252 ttaattgctcttttcgtcccttaagt---tatttggtattgttttggtcccttaagtnnnnnnnnnnttgtttgggtactttatctttatctccgttaca 348  Q
    |||| ||||||||| |||||||||||   |||||||||| | ||||||||||||| |          ||||||| |||||||||||||||||| |||||     
T  30645782 ttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttatctttatctctgttacc 30645683  T
Q  349 tgttttggttccttccgtta 368  Q
    ||||||||| ||||| ||||    
T  30645682 tgttttggtcccttctgtta 30645663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 277 - 368
Target Start/End: Original strand, 13823731 - 13823822
Alignment:
Q  277 ttatttggtattgttttggtcccttaagtnnnnnnnnnnttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||||||||| ||||||||||||| |          ||||||  ||| |||||||||||||||||||| ||||||||| ||||||||||    
T  13823731 ttatttggtattgctttggtcccttaactaaaaaaaagattgtttaagtattttatctttatctccgttacctgttttggtcccttccgtta 13823822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 6794767 - 6794715
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| |||||||||||| ||||||||||  ||||||||| ||||||||||    
T  6794767 ttgtttgagtactttatcttcatctccgttatctgttttggtcccttccgtta 6794715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 13824634 - 13824582
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| ||| |||||||||||||||||||| ||||||||| | ||||||||    
T  13824634 ttgtttgagtattttatctttatctccgttacctgttttggtccattccgtta 13824582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 28905445 - 28905393
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| |||||||||||||||||| ||||| ||||||||| ||||| ||||    
T  28905445 ttgtttgagtactttatctttatctctgttacctgttttggtcccttctgtta 28905393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 28941840 - 28941788
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| |||||||||||||||||| ||||| ||||||||| ||||| ||||    
T  28941840 ttgtttgagtactttatctttatctctgttacctgttttggtcccttctgtta 28941788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 42766887 - 42766939
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| |||| |||| |||||||||||||| ||||||||| ||||||||||    
T  42766887 ttgtttgagtacattatatttatctccgttacctgttttggtcccttccgtta 42766939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 42767681 - 42767629
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| ||||||||||||||||||| |||| ||||||||| ||||| ||||    
T  42767681 ttgtttgagtactttatctttatctccattacctgttttggtcccttctgtta 42767629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 368
Target Start/End: Original strand, 19797667 - 19797786
Alignment:
Q  252 ttaattgctcttttcgtcccttaagt---tatttggtattgttttggtcccttaagtnnnnnnnnnnttgtttgggtactttatctttatctccgttaca 348  Q
    |||| ||||| ||| |||||||||||   |||||||||| ||||||||||||||| |          ||||||| ||| ||||| ||||||||||||||     
T  19797667 ttaaatgctcgtttggtcccttaagtatttatttggtatcgttttggtcccttaactaaaaaaaagattgtttgagtattttatttttatctccgttacc 19797766  T
Q  349 tgttttggttccttccgtta 368  Q
    ||||||||| ||||| ||||    
T  19797767 tgttttggtcccttctgtta 19797786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 357
Target Start/End: Complemental strand, 38385789 - 38385748
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggt 357  Q
    ||||||| |||||||||||||||||||||||| | |||||||    
T  38385789 ttgtttgagtactttatctttatctccgttacctattttggt 38385748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 303
Target Start/End: Complemental strand, 30645162 - 30645108
Alignment:
Q  252 ttaattgctcttttcgtcccttaag---ttatttggtattgttttggtcccttaa 303  Q
    |||| ||||||||||||||||||||   |||||||||||  ||||||||||||||    
T  30645162 ttaaatgctcttttcgtcccttaagtatttatttggtatcattttggtcccttaa 30645108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 3e-59; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 251 - 469
Target Start/End: Original strand, 40468048 - 40468269
Alignment:
Q  251 tttaattgctcttttcgtcccttaagttatt---tggtattgttttggtcccttaagtnnnnnnnnnnttgtttgggtactttatctttatctccgttac 347  Q
    |||||||||||||||||||||||||||||||   |||||| | |||||||||||||||          |||||| ||||||||||||||||||||| |||    
T  40468048 tttaattgctcttttcgtcccttaagttattatttggtatcgctttggtcccttaagtaaaaaaaagattgttttggtactttatctttatctccgatac 40468147  T
Q  348 atgttttggttccttccgttagttttaatcnnnnnnntgttaactgctatccacgtatcattttagcattggctgaaaaacttaatttattttcttcatc 447  Q
    |||||||||| |||||||||||||||||||        ||||||||||||||| || |||||||  ||||||||||||||||||||||||||||||||||    
T  40468148 atgttttggtcccttccgttagttttaatcaaaaaaacgttaactgctatccatgtgtcattttgtcattggctgaaaaacttaatttattttcttcatc 40468247  T
Q  448 ttctccacttaaattcttcatc 469  Q
    ||||||||||||||||||||||    
T  40468248 ttctccacttaaattcttcatc 40468269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 252 - 469
Target Start/End: Original strand, 19297530 - 19297750
Alignment:
Q  252 ttaattgctcttttcgtcccttaagttatt---tggtattgttttggtcccttaagtnnnnnnnnnnttgtttgggtactttatctttatctccgttaca 348  Q
    ||||||||||||||||||||||||||||||   |||||| |||||||||||||||||          |||||| |||||||||| |||||||| ||||||    
T  19297530 ttaattgctcttttcgtcccttaagttattatttggtatcgttttggtcccttaagtaaaaaaaagattgttttggtactttatttttatctctgttaca 19297629  T
Q  349 tgttttggttccttccgttagttttaatcnnnnnnntgttaactgctatccacgtatcattttagcattggctgaaaaacttaatttattttcttcatct 448  Q
    ||||||||| |||||| ||| ||||||||        ||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  19297630 tgttttggtcccttcctttaattttaatcaaaaaaacgttaactgctacccacgtgtcattttggcattggctgaaaaacttaatttattttcttcatct 19297729  T
Q  449 tctccacttaaattcttcatc 469  Q
    |||||||||||||||||||||    
T  19297730 tctccacttaaattcttcatc 19297750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 252 - 469
Target Start/End: Complemental strand, 28190543 - 28190321
Alignment:
Q  252 ttaattgctcttttcgtcccttaagt---tatttggtattgttttggtcccttaagt---nnnnnnnnnnttgtttgggtactttatctttatctccgtt 345  Q
    ||||||||| ||||||||||||||||   ||||||||||  ||||||||||||||||             |||||| |||||||||||||||||||||||    
T  28190543 ttaattgcttttttcgtcccttaagttattatttggtatcattttggtcccttaagtaaaaaaaaaaagattgttttggtactttatctttatctccgtt 28190444  T
Q  346 acatgttttggttccttccgttagttttaatcnnnnnnntgttaactgctatccacgtatcattttagcattggctgaaaaacttaatttattttcttca 445  Q
    |||||||||||| ||||||||||||||||||        ||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||| ||||    
T  28190443 acatgttttggtcccttccgttagttttaat-aaaaaaatgttaactgctatccacgtgtcattttggcattgactgaaaaacttaatttatttttttca 28190345  T
Q  446 tcttctccacttaaattcttcatc 469  Q
    ||||||||||||||||||||||||    
T  28190344 tcttctccacttaaattcttcatc 28190321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 316 - 469
Target Start/End: Original strand, 8029036 - 8029188
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgttagttttaatcnnnnnnntgttaactgctatccacgtatcattttagca 415  Q
    |||||| |||||||||||||||||||||||| |||||||||  | |||||||||||||||||        |||||||||||||||||| ||||||| |||    
T  8029036 ttgttttggtactttatctttatctccgttagatgttttggcccgttccgttagttttaatcaaaaaac-gttaactgctatccacgtgtcattttggca 8029134  T
Q  416 ttggctgaaaaacttaatttattttcttcatcttctccacttaaattcttcatc 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8029135 ttggctgaaaaacttaatttattttcttcatcttctccacttaaattcttcatc 8029188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 252 - 451
Target Start/End: Complemental strand, 20686732 - 20686526
Alignment:
Q  252 ttaattgctcttttcgtcccttaagttatt---tggtattgttttggtcccttaagtnnnnnnnnnn----ttgtttgggtactttatctttatctccgt 344  Q
    ||||||||| ||||||||||||||||||||   |||||||| |||||||||||||||              |||||| ||||||||||||||||||||||    
T  20686732 ttaattgcttttttcgtcccttaagttattatttggtattgctttggtcccttaagtaaaaaaagaaaagattgttttggtactttatctttatctccgt 20686633  T
Q  345 tacatgttttggttccttccgttagttttaatcnnnnnnntgttaactgctatccacgtatcattttagcattggctgaaaaacttaatttattttcttc 444  Q
    ||||||||||||| |||||||||||||||||||        |||||||||||||||||| ||||||| ||||| |||||||||||||| |||||||||||    
T  20686632 tacatgttttggtcccttccgttagttttaatcaaaaaaacgttaactgctatccacgtgtcattttggcattagctgaaaaacttaaattattttcttc 20686533  T
Q  445 atcttct 451  Q
    |||||||    
T  20686532 atcttct 20686526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 252 - 368
Target Start/End: Complemental strand, 10709419 - 10709300
Alignment:
Q  252 ttaattgctcttttcgtcccttaagttattt---ggtattgttttggtcccttaagtnnnnnnnnnnttgtttgggtactttatctttatctccgttaca 348  Q
    ||||||| |||||| |||||||||||||||    ||||| | |||||||||||||||          |||||||| ||||||||||| ||||||||||||    
T  10709419 ttaattgttctttttgtcccttaagttattattaggtatcgatttggtcccttaagtaaaaaaaagattgtttggatactttatcttgatctccgttaca 10709320  T
Q  349 tgttttggttccttccgtta 368  Q
    ||||||||| ||||||||||    
T  10709319 tgttttggtcccttccgtta 10709300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 8029997 - 8029945
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| |||||||||||| ||||||||||| ||||||||| ||||||||||    
T  8029997 ttgtttgagtactttatcttcatctccgttacctgttttggtcccttccgtta 8029945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 28189517 - 28189569
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| |||||||||||| ||||||||||| ||||||||| ||||||||||    
T  28189517 ttgtttgagtactttatcttcatctccgttacctgttttggtcccttccgtta 28189569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 319 - 368
Target Start/End: Original strand, 29519231 - 29519280
Alignment:
Q  319 tttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    |||| |||||||||||||||||||||||| |||||||||  |||||||||    
T  29519231 tttgagtactttatctttatctccgttacttgttttggtctcttccgtta 29519280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 16330826 - 16330774
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| ||| |||||||||||||||||||| ||||||||| ||||| ||||    
T  16330826 ttgtttgagtattttatctttatctccgttacctgttttggtcccttctgtta 16330774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 19298557 - 19298505
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| |||||||||||| ||| ||||||| ||||||||| ||||||||||    
T  19298557 ttgtttgagtactttatcttcatcaccgttacctgttttggtcccttccgtta 19298505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 29520034 - 29519982
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    |||||||| ||||||||||||||||| ||||| ||||||||| ||||| ||||    
T  29520034 ttgtttggatactttatctttatctctgttacctgttttggtcccttctgtta 29519982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 40469085 - 40469033
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| |||||||||||| |||| |||||| ||||||||| ||||||||||    
T  40469085 ttgtttgagtactttatcttcatcttcgttacctgttttggtcccttccgtta 40469033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 367
Target Start/End: Original strand, 16329815 - 16329866
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtt 367  Q
    ||||||| |||||||||||||||||| ||||  ||||||||| |||||||||    
T  16329815 ttgtttgagtactttatctttatctctgttatctgttttggtcccttccgtt 16329866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 368
Target Start/End: Original strand, 8885731 - 8885780
Alignment:
Q  319 tttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    |||| ||| ||||| |||||||||||||| ||||||||| ||||||||||    
T  8885731 tttgagtattttatatttatctccgttacctgttttggtcccttccgtta 8885780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 12601308 - 12601360
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| ||| ||||||||||||| |||||  ||||||||| ||||||||||    
T  12601308 ttgtttgagtattttatctttatcttcgttatctgttttggtcccttccgtta 12601360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 1e-58; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 252 - 469
Target Start/End: Complemental strand, 30766739 - 30766519
Alignment:
Q  252 ttaattgctcttttcgtcccttaagttatt---tggtattgttttggtcccttaagtnnnnnnnnnnttgtttgggtactttatctttatctccgttaca 348  Q
    ||||||||| ||||||||||||||||||||   ||||||   |||||||||||||||          |||||| ||||||||||||||||||||||||||    
T  30766739 ttaattgcttttttcgtcccttaagttattatttggtatcactttggtcccttaagtaaaaaaaagattgttttggtactttatctttatctccgttaca 30766640  T
Q  349 tgttttggttccttccgttagttttaatcnnnnnnntgttaactgctatccacgtatcattttagcattggctgaaaaacttaatttattttcttcatct 448  Q
    ||||||||| |||||||||||||||||||        |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||    
T  30766639 tgttttggtcccttccgttagttttaatcaaaaaaacgttaactgctatccacgtgtcattttggcattggttgaaaaacttaatttattttcttcatct 30766540  T
Q  449 tctccacttaaattcttcatc 469  Q
    |||||||||||||||||||||    
T  30766539 tctccacttaaattcttcatc 30766519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 251 - 469
Target Start/End: Complemental strand, 17279499 - 17279278
Alignment:
Q  251 tttaattgctcttttcgtcccttaagttatt---tggtattgttttggtcccttaagtnnnnnnnnnn-ttgtttgggtactttatctttatctccgtta 346  Q
    |||||||||||||||| ||||||||||||||   |||||| | |||||||| ||||||           |||||| |||||||||||||||||||  |||    
T  17279499 tttaattgctcttttcatcccttaagttattatttggtatcgctttggtcctttaagtaaaaaaaaagattgttttggtactttatctttatctctatta 17279400  T
Q  347 catgttttggttccttccgttagttttaatcnnnnnnntgttaactgctatccacgtatcattttagcattggctgaaaaacttaatttattttcttcat 446  Q
    |||||||||||   |||||||||||||||||        |||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||    
T  17279399 catgttttggtcatttccgttagttttaatcaaaaaac-gttaactgctatccacgtgtcattttgacattggctgaaaaacttaatttattttcttcat 17279301  T
Q  447 cttctccacttaaattcttcatc 469  Q
    |||||||||||||||||||||||    
T  17279300 cttctccacttaaattcttcatc 17279278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 252 - 368
Target Start/End: Complemental strand, 25445133 - 25445015
Alignment:
Q  252 ttaattgctcttttcgtcccttaagttatt---tggtattgttttggtcccttaagtnnnnnnnnnnttgtttgggtactttatctttatctccgttaca 348  Q
    ||||||||||||||||||||||||||||||   || |||   |||||||||||||||          ||||||| |||||||||||||||||||||||||    
T  25445133 ttaattgctcttttcgtcccttaagttattatttgatatcactttggtcccttaagtaaaaaaaagattgtttgtgtactttatctttatctccgttaca 25445034  T
Q  349 tgttttggttccttccgtta 368  Q
    |||||||| |||||||||||    
T  25445033 tgttttgg-tccttccgtta 25445015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 17278469 - 17278521
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| |||||||||||| ||||||||||| ||||||||| ||||||||||    
T  17278469 ttgtttgagtactttatcttcatctccgttacctgttttggtcccttccgtta 17278521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 30765738 - 30765790
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| |||||||||||| ||||||||||| ||||||||| ||||||||||    
T  30765738 ttgtttgagtactttatcttcatctccgttacctgttttggtcccttccgtta 30765790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 42753983 - 42754035
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| |||||||||||||||||||||||| ||||||||| ||||| ||||    
T  42753983 ttgtttgagtactttatctttatctccgttacctgttttggtcccttctgtta 42754035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 362
Target Start/End: Original strand, 16956000 - 16956046
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttcctt 362  Q
    ||||||| |||||||||||||||||||||||| ||||||||| ||||    
T  16956000 ttgtttgagtactttatctttatctccgttacctgttttggtccctt 16956046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 316 - 357
Target Start/End: Original strand, 17236134 - 17236175
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggt 357  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  17236134 ttgtttgagtactttatttttatctccgttacatgttttggt 17236175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 18297224 - 18297276
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| ||| |||||||||||||||||||| | ||||||| ||||||||||    
T  18297224 ttgtttgagtattttatctttatctccgttacctattttggtcccttccgtta 18297276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 25443067 - 25443119
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| |||||||||||||||||||||||  ||||||||| ||||| ||||    
T  25443067 ttgtttgagtactttatctttatctccgttatctgttttggtcccttctgtta 25443119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 30474346 - 30474398
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    |||||||  ||||||||||||||||||||||| | ||||||||||||| ||||    
T  30474346 ttgtttgaatactttatctttatctccgttacctattttggttccttctgtta 30474398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 460
Target Start/End: Original strand, 36986311 - 36986356
Alignment:
Q  413 gcattggctgaaaaacttaatttattttcttcatcttctccacttaaa 460  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||    
T  36986311 gcattggctgaaaa-cttaattt-ttttcttcatcttctccacttaaa 36986356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 14681979 - 14682019
Alignment:
Q  328 tttatctttatctccgttacatgttttggttccttccgtta 368  Q
    |||||||||||||||||||| ||||||||| ||||| ||||    
T  14681979 tttatctttatctccgttacctgttttggtcccttctgtta 14682019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 1e-58; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 252 - 469
Target Start/End: Complemental strand, 40681556 - 40681337
Alignment:
Q  252 ttaattgctcttttcgtcccttaagttatt---tggtattgttttggtcccttaagtnnnnnnnnnnttgtttgggtactttatctttatctccgttaca 348  Q
    ||||||||||||||||||||||||||||||   |||||| | |||||||||||||||          |||||| ||||||||||||||||||| ||||||    
T  40681556 ttaattgctcttttcgtcccttaagttattatttggtatcgctttggtcccttaagtaaaaaaaagattgttttggtactttatctttatctctgttaca 40681457  T
Q  349 tgttttggttccttccgttagttttaatcnnnnnnntgttaactgctatccacgtatcattttagcattggctgaaaaacttaatttattttcttcatct 448  Q
    ||||||||| ||||||||||||||||||         |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  40681456 tgttttggtcccttccgttagttttaataaaaaaac-gttaactgctatccacgtgtcattttggcattggctgaaaaacttaatttattttcttcatct 40681358  T
Q  449 tctccacttaaattcttcatc 469  Q
    |||||||||||||||||||||    
T  40681357 tctccacttaaattcttcatc 40681337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 316 - 469
Target Start/End: Original strand, 9086363 - 9086515
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgttagttttaatcnnnnnnntgttaactgctatccacgtatcattttagca 415  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||        |||| ||||||||||||| ||||||| |||    
T  9086363 ttgttttggtactttatctttatctccgttacatgttttggtcccttccgttagttttaatcaaaaaac-gttacctgctatccacgtgtcattttggca 9086461  T
Q  416 ttggctgaaaaacttaatttattttcttcatcttctccacttaaattcttcatc 469  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  9086462 ttggctgaaaaactaaatttattttattcatcttctccacttaaattcttcatc 9086515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 277 - 368
Target Start/End: Complemental strand, 26281277 - 26281186
Alignment:
Q  277 ttatttggtattgttttggtcccttaagtnnnnnnnnnnttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||||||| ||||||||||||||| |          ||||||| |||||||||||||||||||||||| | ||||||| ||||||||||    
T  26281277 ttatttggtatcgttttggtcccttaactaaaaaaaagattgtttgagtactttatctttatctccgttacctattttggtcccttccgtta 26281186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 11816742 - 11816690
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||    
T  11816742 ttgtttgagtattttatctttatctccgttacctgttttggtcccttccgtta 11816690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 357
Target Start/End: Original strand, 44182593 - 44182673
Alignment:
Q  277 ttatttggtattgttttggtcccttaagtnnnnnnnnnnttgtttgggtactttatctttatctccgttacatgttttggt 357  Q
    ||||||||||| ||||||||||||||| |          ||||||| |||||||||||||||||||||||| |||||||||    
T  44182593 ttatttggtatcgttttggtcccttaactaaaaaaaagattgtttgagtactttatctttatctccgttacctgttttggt 44182673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 362
Target Start/End: Original strand, 45044438 - 45044484
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttcctt 362  Q
    ||||||| |||||||||||||||||||||||| ||||||||| ||||    
T  45044438 ttgtttgagtactttatctttatctccgttacctgttttggtccctt 45044484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 277 - 368
Target Start/End: Complemental strand, 44183833 - 44183742
Alignment:
Q  277 ttatttggtattgttttggtcccttaagtnnnnnnnnnnttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||||||||||||||||||||||| |          ||||||  |||||||||||||||||| ||||| ||||||||| | ||||||||    
T  44183833 ttatttggtattgttttggtcccttaactaaaaaaaagattgtttaagtactttatctttatctctgttacctgttttggtccattccgtta 44183742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 316 - 357
Target Start/End: Complemental strand, 53596137 - 53596096
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggt 357  Q
    ||||||| |||||||||||||||||||||||| |||||||||    
T  53596137 ttgtttgagtactttatctttatctccgttacctgttttggt 53596096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 11815931 - 11815983
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| |||| ||||||||||||||||||| ||||||||| ||||| ||||    
T  11815931 ttgtttgagtacattatctttatctccgttacctgttttggtcccttctgtta 11815983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 40680535 - 40680587
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| |||||||||||| |||| |||||| ||||||||| ||||||||||    
T  40680535 ttgtttgagtactttatcttcatcttcgttacctgttttggtcccttccgtta 40680587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 50282912 - 50282868
Alignment:
Q  324 gtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    |||||||||||||||||| ||||| ||||||||| ||||||||||    
T  50282912 gtactttatctttatctctgttacctgttttggtcccttccgtta 50282868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 9086289 - 9086346
Alignment:
Q  251 tttaattgctcttttcgtcccttaag---ttatttggtattgttttggtcccttaagt 305  Q
    ||||||| ||||||||||||||||||   ||||||||||| | |||||||||||||||    
T  9086289 tttaatttctcttttcgtcccttaagttattatttggtatcgctttggtcccttaagt 9086346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 454
Target Start/End: Complemental strand, 12096601 - 12096547
Alignment:
Q  399 cacgtatcattttagcattggctgaaaaacttaatttattttcttcatcttctcca 454  Q
    ||||| ||||||||| ||||||||||||  | ||||||||||||||||||||||||    
T  12096601 cacgtgtcattttagtattggctgaaaat-tgaatttattttcttcatcttctcca 12096547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 376
Target Start/End: Complemental strand, 9010800 - 9010762
Alignment:
Q  338 tctccgttacatgttttggttccttccgttagttttaat 376  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  9010800 tctccgttacatattttggttacttccgttagttttaat 9010762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 347
Target Start/End: Complemental strand, 31081756 - 31081660
Alignment:
Q  252 ttaattgctcttttcgtcccttaagt-tatttggtattgttttggtcccttaagtnnnnnnnnnnttgtttgggtactttatctttatctccgttac 347  Q
    |||| ||||||||| ||||||||||| |||||||||||| || |||||||||| |          ||||||| |||||||||||||||| |||||||    
T  31081756 ttaaatgctcttttggtcccttaagtatatttggtattgcttcggtcccttaactaaaaaaaagattgtttgagtactttatctttatccccgttac 31081660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 357
Target Start/End: Original strand, 2734867 - 2734908
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggt 357  Q
    ||||||| |||||||||||| ||||||||||| |||||||||    
T  2734867 ttgtttgagtactttatcttcatctccgttacctgttttggt 2734908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 368
Target Start/End: Complemental strand, 9087345 - 9087296
Alignment:
Q  319 tttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    |||| |||||||||||| ||||||||||  ||||||||| ||||||||||    
T  9087345 tttgagtactttatcttcatctccgttatctgttttggtcccttccgtta 9087296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 43630310 - 43630270
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttgg 356  Q
    ||||||| ||| |||||||||||||||||||| ||||||||    
T  43630310 ttgtttgagtattttatctttatctccgttacctgttttgg 43630270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 2e-56; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 252 - 469
Target Start/End: Original strand, 12260449 - 12260668
Alignment:
Q  252 ttaattgctcttttcgtcccttaagttatt---tggtattgttttggtcccttaagtnnnnnnnnnnttgtttgggtactttatctttatctccgttaca 348  Q
    ||||||||||||||||||||||||||||||   |||||| | |||||||||||||||          |||||| ||||||||||||||||||| ||||||    
T  12260449 ttaattgctcttttcgtcccttaagttattatttggtatcgctttggtcccttaagtaaaaaaaagattgttttggtactttatctttatctctgttaca 12260548  T
Q  349 tgttttggttccttccgttagttttaatcnnnnnnntgttaactgctatccacgtatcattttagcattggctgaaaaacttaatttattttcttcatct 448  Q
    ||||||||| ||||||||||||||||||         |||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||    
T  12260549 tgttttggtcccttccgttagttttaataaaaaaac-gttaactgctatccacgtgtcattttgacattggctgaaaaacttaatttattttcttcatct 12260647  T
Q  449 tctccacttaaattcttcatc 469  Q
    |||||||||||||||||||||    
T  12260648 tctccacttaaattcttcatc 12260668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 316 - 469
Target Start/End: Complemental strand, 27129867 - 27129715
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgttagttttaatcnnnnnnntgttaactgctatccacgtatcattttagca 415  Q
    |||||| | ||||||||||||||||||||||||||||||||| |||||| ||||||||||||        |||||||||||||||||| ||||||| |||    
T  27129867 ttgttttgatactttatctttatctccgttacatgttttggtcccttccattagttttaatcaaaaaac-gttaactgctatccacgtgtcattttggca 27129769  T
Q  416 ttggctgaaaaacttaatttattttcttcatcttctccacttaaattcttcatc 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27129768 ttggctgaaaaacttaatttattttcttcatcttctccacttaaattcttcatc 27129715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 252 - 469
Target Start/End: Original strand, 20745588 - 20745808
Alignment:
Q  252 ttaattgctcttttcgtcccttaagttatt---tggtattgttttggtcccttaagtnnnnnnnnnnttgtttgggtactttatctttatctccgttaca 348  Q
    |||||| |||||||||||||||||||||||   |||||| | |||| ||||||||||          |||||| ||||||||||||||||||||||||||    
T  20745588 ttaattactcttttcgtcccttaagttattatttggtatcgctttgatcccttaagtaaaaaaaagattgttttggtactttatctttatctccgttaca 20745687  T
Q  349 tgttttggttccttccgttagttttaatcnnnnnnnt-gttaactgctatccacgtatcattttagcattggctgaaaaacttaatttattttcttcatc 447  Q
    ||| ||||| |||||| ||||||||||||         |||||||||||||||||| ||||||| |||| || |||||||||||||||||||||||||||    
T  20745688 tgtgttggtcccttccattagttttaatcaaaaaaaacgttaactgctatccacgtgtcattttggcat-ggttgaaaaacttaatttattttcttcatc 20745786  T
Q  448 ttctccacttaaattcttcatc 469  Q
    ||||||||||||||||||||||    
T  20745787 ttctccacttaaattcttcatc 20745808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 12261478 - 12261426
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| |||||||||||| ||||||||||| ||||||||| ||||||||||    
T  12261478 ttgtttgagtactttatcttcatctccgttacctgttttggtcccttccgtta 12261426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 16146147 - 16146199
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| |||||||||||| |||| |||||| ||||||||| ||||||||||    
T  16146147 ttgtttgagtactttatcttcatcttcgttacctgttttggtcccttccgtta 16146199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 357
Target Start/End: Original strand, 10998794 - 10998835
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggt 357  Q
    ||||||| ||||||||| |||||||||||||| |||||||||    
T  10998794 ttgtttgagtactttatttttatctccgttacctgttttggt 10998835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 461
Target Start/End: Complemental strand, 17163921 - 17163884
Alignment:
Q  424 aaaacttaatttattttcttcatcttctccacttaaat 461  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  17163921 aaaacttaatttattttcctcatcttttccacttaaat 17163884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 901495 - 901539
Alignment:
Q  324 gtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    |||||||||||||||||||||||| | ||||||| | ||||||||    
T  901495 gtactttatctttatctccgttacctattttggtcctttccgtta 901539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 902734 - 902690
Alignment:
Q  324 gtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    |||||||||||||||||||||||| | ||||||| | ||||||||    
T  902734 gtactttatctttatctccgttacctattttggtcctttccgtta 902690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 6e-54; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 252 - 469
Target Start/End: Original strand, 32304235 - 32304454
Alignment:
Q  252 ttaattgctcttttcgtcccttaagttatt---tggtattgttttggtcccttaagtnnnnnnnnnnttgtttgggtactttatctttatctccgttaca 348  Q
    ||||||||||||||||||||||||||||||   |||||| | |||||||||||||||          |||||| ||||||||||||||||||||||||||    
T  32304235 ttaattgctcttttcgtcccttaagttattatttggtatcgctttggtcccttaagtaaaaaaaagattgttttggtactttatctttatctccgttaca 32304334  T
Q  349 tgttttggttccttccgttagttttaatcnnnnnnntgttaactgctatccacgtatcattttagcattggctgaaaaacttaatttattttcttcatct 448  Q
    ||||||||| | |||||||| |||||||         |||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  32304335 tgttttggtcctttccgttaattttaataaaaaaac-gttaactgttatccacgtgtcattttggcattggctgaaaaacttaatttattttcttcatct 32304433  T
Q  449 tctccacttaaattcttcatc 469  Q
    |||||||||||||||||||||    
T  32304434 tctccacttaaattcttcatc 32304454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 252 - 451
Target Start/End: Complemental strand, 34819675 - 34819474
Alignment:
Q  252 ttaattgctcttttcgtcccttaagttatt---tggtattgttttggtcccttaagtnnnnnnnnnnttgtttgggtactttatctttatctccgttaca 348  Q
    ||||||||||||||||||||||||||||||   |||||||| |||||| ||||||||          |||||| ||||||||||||||||||| ||||||    
T  34819675 ttaattgctcttttcgtcccttaagttattatttggtattgatttggttccttaagtaaaaaaaaggttgtttaggtactttatctttatctctgttaca 34819576  T
Q  349 tgttttggttccttccgttagttttaatcnnnnnnntgttaactgctatccacgtatcattttagcattggctgaaaaacttaatttattttcttcatct 448  Q
    ||||||||| | |||||||||||||||||        ||||||| |||||||| | ||||||| |||||| |||||||||||||||||||||||||||||    
T  34819575 tgttttggtccattccgttagttttaatcaaaaaac-gttaactactatccacatgtcattttggcattgactgaaaaacttaatttattttcttcatct 34819477  T
Q  449 tct 451  Q
    |||    
T  34819476 tct 34819474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 316 - 469
Target Start/End: Original strand, 42540233 - 42540384
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgttagttttaatcnnnnnnntgttaactgctatccacgtatcattttagca 415  Q
    |||||| |||||||||||||||||||| ||| ||||||||||  ||||||||| |||||||         |||||||||||| ||||| |||||||  ||    
T  42540233 ttgttttggtactttatctttatctccattaaatgttttggtctcttccgttaattttaataaaaaaaacgttaactgctattcacgtgtcattttgaca 42540332  T
Q  416 ttggctgaaaaacttaatttattttcttcatcttctccacttaaattcttcatc 469  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  42540333 ttggctgaaaaacttaatttattttcttc--cttctccacttaaattcttcatc 42540384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 252 - 451
Target Start/End: Original strand, 17509467 - 17509670
Alignment:
Q  252 ttaattgctcttttcgtcccttaagttatt---tggtattgttttggtcccttaagtnnnnnnnnnnttgtttgggtactttatctttatctccgttaca 348  Q
    ||||||| ||||||||||||||||||||||   |||||| | ||||||||||| |||          |||||||||||||||||||||||||||||||||    
T  17509467 ttaattgttcttttcgtcccttaagttattatttggtatcgctttggtcccttcagtaaaaacaaaattgtttgggtactttatctttatctccgttaca 17509566  T
Q  349 tgttttggttccttccgttagttttaatcnnnnnnnt-gttaactgctatccacgtatcattttagcattggctgaaaaacttaatttattttcttcatc 447  Q
    |||||| ||  ||||||||| |||||||          |||||||||||||||||| |||||||  ||| ||||||||||||||||||||||| ||||||    
T  17509567 tgttttagtctcttccgttaattttaatataaaaaaacgttaactgctatccacgtgtcattttgacatcggctgaaaaacttaatttatttttttcatc 17509666  T
Q  448 ttct 451  Q
    ||||    
T  17509667 ttct 17509670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 34817401 - 34817453
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| |||||||||||||||||||||||| ||||||||| ||||||||||    
T  34817401 ttgtttgagtactttatctttatctccgttacctgttttggtcccttccgtta 34817453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 17514697 - 17514645
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| ||||||||||||||||||| |||| ||||||||| ||||||||||    
T  17514697 ttgtttgagtactttatctttatctccattacctgttttggtcccttccgtta 17514645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 32305258 - 32305206
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| |||||||||||| ||||||||||| ||||||||| ||||||||||    
T  32305258 ttgtttgagtactttatcttcatctccgttacctgttttggtcccttccgtta 32305206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 357
Target Start/End: Original strand, 52254306 - 52254414
Alignment:
Q  252 ttaattgctcttttcgtcccttaagt---tatttggtattgttttggtcccttaagtnnnnnnnnnnttgtttgggtactttatctttatctccgttaca 348  Q
    |||| ||||||||| |||| ||||||   |||||||||| ||||||||||||||| |          ||||||| |||||||||||||||||||||||      
T  52254306 ttaaatgctcttttggtcctttaagtatttatttggtatcgttttggtcccttaactaaaaaaaagattgtttgagtactttatctttatctccgttatc 52254405  T
Q  349 tgttttggt 357  Q
    |||||||||    
T  52254406 tgttttggt 52254414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 517
Target Start/End: Complemental strand, 34819460 - 34819430
Alignment:
Q  487 ggaaaataagaacaacaccaacaacactttc 517  Q
    |||||||||||||||||||||||||||||||    
T  34819460 ggaaaataagaacaacaccaacaacactttc 34819430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 489 - 517
Target Start/End: Original strand, 17509686 - 17509714
Alignment:
Q  489 aaaataagaacaacaccaacaacactttc 517  Q
    |||||||||||||||||||||||||||||    
T  17509686 aaaataagaacaacaccaacaacactttc 17509714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 42541188 - 42541136
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| |||||||||||| ||||| ||||| ||||||||| ||||| ||||    
T  42541188 ttgtttgagtactttatcttcatctctgttacctgttttggtcccttctgtta 42541136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 54831925 - 54831977
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| ||| |||||||||||||| ||||| ||||||||| ||||| ||||    
T  54831925 ttgtttgagtattttatctttatctctgttacctgttttggtcccttcagtta 54831977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 316 - 469
Target Start/End: Original strand, 21298 - 21450
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgttagttttaatcnnnnnnntgttaactgctatccacgtatcattttagca 415  Q
    |||||| | ||||||||||||||||| |||||||||||||||  |||||||||||||||||          | |||| |||| ||| | |||||||  ||    
T  21298 ttgtttagatactttatctttatctctgttacatgttttggtctcttccgttagttttaataaaaaaaca-tcaactactattcacttgtcattttgaca 21396  T
Q  416 ttggctgaaaaacttaatttattttcttcatcttctccacttaaattcttcatc 469  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21397 ttggctgaaaaatttaatttattttcttcatcttctccacttaaattcttcatc 21450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 517
Target Start/End: Original strand, 21468 - 21498
Alignment:
Q  487 ggaaaataagaacaacaccaacaacactttc 517  Q
    |||||||||||||||||||||||||||||||    
T  21468 ggaaaataagaacaacaccaacaacactttc 21498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 424 - 469
Target Start/End: Complemental strand, 91358 - 91313
Alignment:
Q  424 aaaacttaatttattttcttcatcttctccacttaaattcttcatc 469  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||    
T  91358 aaaacttaatttattttcttcctattctccacttaaattcttcatc 91313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 14693 - 14641
Alignment:
Q  316 ttgtttgggtactttatctttatctccgttacatgttttggttccttccgtta 368  Q
    ||||||| ||| |||||||||||||| ||||| ||||||||| ||||||||||    
T  14693 ttgtttgagtattttatctttatctctgttacctgttttggtcccttccgtta 14641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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