View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7631_low_3 (Length: 511)

Name: NF7631_low_3
Description: NF7631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7631_low_3
NF7631_low_3
[»] chr8 (8 HSPs)
chr8 (17-503)||(38061021-38061507)
chr8 (296-372)||(13274501-13274577)
chr8 (299-377)||(29275794-29275872)
chr8 (298-373)||(19385680-19385755)
chr8 (313-376)||(21241097-21241160)
chr8 (328-370)||(44313256-44313298)
chr8 (328-370)||(44317068-44317110)
chr8 (296-376)||(41279189-41279268)
[»] chr2 (4 HSPs)
chr2 (299-496)||(24407308-24407505)
chr2 (308-496)||(24411900-24412088)
chr2 (298-396)||(13437699-13437796)
chr2 (310-370)||(36050193-36050253)
[»] chr7 (4 HSPs)
chr7 (298-405)||(24509576-24509683)
chr7 (296-405)||(2435122-2435231)
chr7 (298-392)||(2432906-2433000)
chr7 (298-372)||(43697351-43697425)
[»] chr4 (7 HSPs)
chr4 (298-396)||(6686461-6686559)
chr4 (302-399)||(6683232-6683329)
chr4 (299-376)||(579930-580007)
chr4 (308-366)||(8532494-8532552)
chr4 (314-388)||(17538528-17538603)
chr4 (314-388)||(17539575-17539650)
chr4 (310-366)||(8532765-8532821)
[»] chr6 (5 HSPs)
chr6 (298-405)||(21182568-21182675)
chr6 (298-461)||(20758669-20758839)
chr6 (298-373)||(34237308-34237383)
chr6 (328-370)||(34099594-34099636)
chr6 (296-372)||(14923463-14923538)
[»] chr1 (6 HSPs)
chr1 (320-503)||(8753149-8753340)
chr1 (325-399)||(49873196-49873270)
chr1 (300-373)||(964624-964696)
chr1 (298-405)||(48713564-48713669)
chr1 (419-496)||(22020155-22020232)
chr1 (330-370)||(4673386-4673426)
[»] scaffold0211 (1 HSPs)
scaffold0211 (298-376)||(20846-20924)
[»] chr3 (4 HSPs)
chr3 (312-377)||(6240151-6240216)
chr3 (298-370)||(26362578-26362650)
chr3 (298-370)||(4167772-4167843)
chr3 (313-387)||(36666061-36666135)


Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 17 - 503
Target Start/End: Original strand, 38061021 - 38061507
Alignment:
Q  17 acttttttgtaacggccttcctttatagctcttaaatgtggcagtaacattgtttggtcaaagaaaatattccttgttataagaaagaagccgatactca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38061021 acttttttgtaacggccttcctttatagctcttaaatgtggcagtaacattgtttggtcaaagaaaatattccttgttataagaaagaagccgatactca 38061120  T
Q  117 cacctagtatgcacgcattcttttacttggccttgccttatttttctttaaataaaacgatcgctagattgtgcnnnnnnnntaaatgaaattagtggcc 216  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||        ||||||||||||||||||    
T  38061121 cacctagtatgcacacattcttttacttggtcttgccttatttttctttaaataaaacgatcactagattgtgcaaaaaaaataaatgaaattagtggcc 38061220  T
Q  217 atccaatagtgtgtattcacacacataaactttaaaaatgtggaatgccattttcttgaaaataattttccttgttagttatgttaaatcctgggggatt 316  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  38061221 atccaatagtgtgtattcacacacctaaactttaaaaatgtggaatgccattttcttgaaaataattttccttgttagttatgttaaatccaaggggatt 38061320  T
Q  317 agcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagactacttcactgcttgttcgttctacagatattgattcggtaacggg 416  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  38061321 agcgtataattacgcggaaaatccttaaggacagtttgatcagcacgtctcagactacttcactgcttgttcgttctacagatattaattcggtagcggg 38061420  T
Q  417 ttaaatttggttgttaaagatactgataaagttgtggtcggtgatttaattacacagcaatctcaataagataagtttattcatctc 503  Q
    || |||||| ||||||||||| |||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  38061421 tttaatttgattgttaaagatgctgataaagtagtggtcggtgatctaattacacaacaatctcaataagataagtttattcatctc 38061507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 13274577 - 13274501
Alignment:
Q  296 tatgttaaatcctgggggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagact 372  Q
    ||||||| ||||| |||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  13274577 tatgttatatcctaggggattaacgtataattacgcggaaaatctttaaggacagtgcgatcagcacgtctcagact 13274501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 299 - 377
Target Start/End: Original strand, 29275794 - 29275872
Alignment:
Q  299 gttaaatcctgggggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagactacttc 377  Q
    ||||||| || ||||||||||||||||| ||||||||||||||||| || ||| |||| ||||||||||||||||||||    
T  29275794 gttaaattctaggggattagcgtataatcacgcggaaaatccttaaagatagtgcgattagcacgtctcagactacttc 29275872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 298 - 373
Target Start/End: Complemental strand, 19385755 - 19385680
Alignment:
Q  298 tgttaaatcctgggggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagacta 373  Q
    ||||||||| |||||| |||||||||||||||| | |||||| | ||||| ||| |||||||||||||||||||||    
T  19385755 tgttaaatcttggggggttagcgtataattacgtgaaaaatcatgaaggatagtgcgatcagcacgtctcagacta 19385680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 313 - 376
Target Start/End: Complemental strand, 21241160 - 21241097
Alignment:
Q  313 gattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagactactt 376  Q
    |||||||||||||||| |||||||||||||||||| | |  |||||| | ||||||||||||||    
T  21241160 gattagcgtataattatgcggaaaatccttaaggatattgtgatcagtatgtctcagactactt 21241097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 370
Target Start/End: Original strand, 44313256 - 44313298
Alignment:
Q  328 acgcggaaaatccttaaggacagttcgatcagcacgtctcaga 370  Q
    ||||||||||||||| |||||||| || |||||||||||||||    
T  44313256 acgcggaaaatccttgaggacagtgcgttcagcacgtctcaga 44313298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 370
Target Start/End: Original strand, 44317068 - 44317110
Alignment:
Q  328 acgcggaaaatccttaaggacagttcgatcagcacgtctcaga 370  Q
    ||||||||||||||| |||||||| || |||||||||||||||    
T  44317068 acgcggaaaatccttgaggacagtgcgttcagcacgtctcaga 44317110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 376
Target Start/End: Complemental strand, 41279268 - 41279189
Alignment:
Q  296 tatgttaaatcctgggggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagactactt 376  Q
    ||||||||||  |||| ||||||||||| | |||||| || |||||||| || ||| |||||||| ||||||| |||||||    
T  41279268 tatgttaaattttgggagattagcgtatta-tacgcgaaatatccttaaagatagtgcgatcagcgcgtctcaaactactt 41279189  T

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Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 299 - 496
Target Start/End: Original strand, 24407308 - 24407505
Alignment:
Q  299 gttaaatcctgggggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagactacttcactgcttgttcgttctacaga 398  Q
    |||||||| ||||| ||||||| |||||||||| |||||||| |||||||||| ||||| |||||||||||||||||||||| ||| || |||||||| |    
T  24407308 gttaaatcttggggaattagcgcataattacgcagaaaatccataaggacagtgcgatcggcacgtctcagactacttcactacttatttgttctacata 24407407  T
Q  399 tattgattcggtaacgggttaaatttggttgttaaagatactgataaagttgtggtcggtgatttaattacacagcaatctcaataagataagtttat 496  Q
    |  |||||||||| | | || ||||||||||| ||||||  ||||||| |||||||||||||| |||||  |||||||||||||  ||||||||||||    
T  24407408 tgatgattcggtagcagatttaatttggttgtcaaagatgttgataaatttgtggtcggtgatataattcaacagcaatctcaaagagataagtttat 24407505  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 308 - 496
Target Start/End: Complemental strand, 24412088 - 24411900
Alignment:
Q  308 tgggggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagactacttcactgcttgttcgttctacagatattgattc 407  Q
    ||||||||||| | ||||||||||| ||||||| |||||||||| | ||| |||| ||||||||||||||||| |||||| |||||||| ||  ||||||    
T  24412088 tgggggattagagcataattacgcgtaaaatccataaggacagtgccatcggcacatctcagactacttcactacttgtttgttctacatatgatgattc 24411989  T
Q  408 ggtaacgggttaaatttggttgttaaagatactgataaagttgtggtcggtgatttaattacacagcaatctcaataagataagtttat 496  Q
    |||| | | || |||||| |||| ||||||  ||||||| |||| ||||||||| |||||  ||| |||||||||  ||||||||||||    
T  24411988 ggtagcagatttaatttgcttgtcaaagatgttgataaatttgtagtcggtgatataattcaacaacaatctcaaagagataagtttat 24411900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 298 - 396
Target Start/End: Complemental strand, 13437796 - 13437699
Alignment:
Q  298 tgttaaatcctgggggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagactacttcactgcttgttcgttctaca 396  Q
    |||||||||||| || ||||||||||||||||| ||||||||||||| |||||| |||| | ||| ||||||||||| |||||||||||||||||||||    
T  13437796 tgttaaatcctgagg-attagcgtataattacgtggaaaatccttaaagacagtgcgattaacacatctcagactacctcactgcttgttcgttctaca 13437699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 310 - 370
Target Start/End: Original strand, 36050193 - 36050253
Alignment:
Q  310 ggggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcaga 370  Q
    |||| |||||||||||||||||  ||||| |||||||||||| ||||||||||||||||||    
T  36050193 ggggtttagcgtataattacgcaaaaaattcttaaggacagtgcgatcagcacgtctcaga 36050253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 298 - 405
Target Start/End: Complemental strand, 24509683 - 24509576
Alignment:
Q  298 tgttaaatcctgggggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagactacttcactgcttgttcgttctacag 397  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||     
T  24509683 tgttaaatcctgggcgattagcgtataattacgcggaaaattcttaaggacagtgcgatcagcacgtctcagactacctcactggttgttcgttctacat 24509584  T
Q  398 atattgat 405  Q
    || |||||    
T  24509583 attttgat 24509576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 296 - 405
Target Start/End: Original strand, 2435122 - 2435231
Alignment:
Q  296 tatgttaaatcctgggggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagactacttcactgcttgttcgttctac 395  Q
    ||||||||||| |||||||||| |||||||||||||| |||||||||||| | ||| |||||||||||||| ||||||| ||| || |||||||||| ||    
T  2435122 tatgttaaatcttgggggattaacgtataattacgcgaaaaatccttaagaaaagtgcgatcagcacgtctaagactacctcattgtttgttcgttccac 2435221  T
Q  396 agatattgat 405  Q
    |||| |||||    
T  2435222 agatcttgat 2435231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 298 - 392
Target Start/End: Original strand, 2432906 - 2433000
Alignment:
Q  298 tgttaaatcctgggggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagactacttcactgcttgttcgttc 392  Q
    ||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||  |||||||| || |||| |||| ||| || ||||||||||    
T  2432906 tgttaaatcttggaggattagcgtataattacgtggaaaatccttaaggacagtgtgatcagcatgtttcagtctacctcattgtttgttcgttc 2433000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 372
Target Start/End: Original strand, 43697351 - 43697425
Alignment:
Q  298 tgttaaatcctgggggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagact 372  Q
    |||||||||||||| | ||||| |||||||||| | ||||||||||||||||   ||||||||||||||||||||    
T  43697351 tgttaaatcctgggcggttagcatataattacgtgaaaaatccttaaggacaacgcgatcagcacgtctcagact 43697425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 298 - 396
Target Start/End: Original strand, 6686461 - 6686559
Alignment:
Q  298 tgttaaatcctgggggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagactacttcactgcttgttcgttctaca 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||| ||||||| |||||||    
T  6686461 tgttaaatcctgggggattagcgtataattacgcggaaaatccttaaggacagtgcgatcagcacgtctcagactgcctcactacttgttcattctaca 6686559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 302 - 399
Target Start/End: Original strand, 6683232 - 6683329
Alignment:
Q  302 aaatcctgggggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagactacttcactgcttgttcgttctacagat 399  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| | ||||| ||||||||||||||||||    
T  6683232 aaatcctggaggattagcgtataattacgcggaaaattcttaaggacagtgcgatcagcacgtctcagactgcctcactacttgttcgttctacagat 6683329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 580007 - 579930
Alignment:
Q  299 gttaaatcctgggggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagactactt 376  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||| || |||||||||||    
T  580007 gttaaattctgggggattaacgtataattacgcggaaaatccttaagaacagtgcgatcagcatgtttcagactactt 579930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 308 - 366
Target Start/End: Complemental strand, 8532552 - 8532494
Alignment:
Q  308 tgggggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtct 366  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  8532552 tgggggattagcgtataattacgcggaaaattcttaaggacagtgcgatcagcacgtct 8532494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 314 - 388
Target Start/End: Original strand, 17538528 - 17538603
Alignment:
Q  314 attagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagactac-ttcactgcttgttc 388  Q
    ||||||||||||||||||||||||| |||||| ||||| |||||||||||||| ||||||| ||||||| ||||||    
T  17538528 attagcgtataattacgcggaaaatgcttaagcacagtgcgatcagcacgtcttagactactttcactgtttgttc 17538603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 314 - 388
Target Start/End: Original strand, 17539575 - 17539650
Alignment:
Q  314 attagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagactac-ttcactgcttgttc 388  Q
    ||||||||||||||||||||||||| |||||| ||||| |||||||||||||| ||||||| ||||||| ||||||    
T  17539575 attagcgtataattacgcggaaaatgcttaagcacagtgcgatcagcacgtcttagactactttcactgtttgttc 17539650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 310 - 366
Target Start/End: Complemental strand, 8532821 - 8532765
Alignment:
Q  310 ggggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtct 366  Q
    ||||||||||||||||||||||| |||||| |||||||||||  |||||||||||||    
T  8532821 ggggattagcgtataattacgcgaaaaatcattaaggacagtgtgatcagcacgtct 8532765  T

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Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 298 - 405
Target Start/End: Complemental strand, 21182675 - 21182568
Alignment:
Q  298 tgttaaatcctgggggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagactacttcactgcttgttcgttctacag 397  Q
    |||||||||||| ||||||||||||||||||| || |||||| ||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||    
T  21182675 tgttaaatcctgagggattagcgtataattacacgaaaaatcattaaggacaatgcgatcagcacgtctcagactacctcactgcttgttcgttctacag 21182576  T
Q  398 atattgat 405  Q
    || |||||    
T  21182575 attttgat 21182568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 298 - 461
Target Start/End: Complemental strand, 20758839 - 20758669
Alignment:
Q  298 tgttaaatcctgggggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagactacttcactgcttgttcgttctacag 397  Q
    ||||||||| ||||||||||||||||||  ||| ||||||| ||||||||||||  ||||||||||||||||||||| |||||| |||||||||||| ||    
T  20758839 tgttaaatcttgggggattagcgtataaacacgtggaaaattcttaaggacagtgtgatcagcacgtctcagactacctcactgtttgttcgttctatag 20758740  T
Q  398 a-------tattgattcggtaacgggttaaatttggttgttaaagatactgataaagttgtggtcggtgat 461  Q
    |        |||||||||||| | | ||  |||||||||| ||||||  ||||||||||||||||||||||    
T  20758739 accttgataattgattcggtagcagattttatttggttgtcaaagatgttgataaagttgtggtcggtgat 20758669  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 298 - 373
Target Start/End: Complemental strand, 34237383 - 34237308
Alignment:
Q  298 tgttaaatcctgggggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagacta 373  Q
    ||||||||||| ||  ||||| |||||||||||||||||||||||||||||||| ||||||  | |||||||||||    
T  34237383 tgttaaatcctaggaaattagtgtataattacgcggaaaatccttaaggacagtgcgatcaatatgtctcagacta 34237308  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 370
Target Start/End: Complemental strand, 34099636 - 34099594
Alignment:
Q  328 acgcggaaaatccttaaggacagttcgatcagcacgtctcaga 370  Q
    ||||||||||||||| |||||||| || |||||||||||||||    
T  34099636 acgcggaaaatccttgaggacagtgcgttcagcacgtctcaga 34099594  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 372
Target Start/End: Original strand, 14923463 - 14923538
Alignment:
Q  296 tatgttaaatcctgggggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagact 372  Q
    ||||||||||| ||| || ||||||||| || ||| |||||||| || |||||||  |||||||| |||||||||||    
T  14923463 tatgttaaatcatggtgggttagcgtattat-acgtggaaaatctttgaggacagcgcgatcagcgcgtctcagact 14923538  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 320 - 503
Target Start/End: Complemental strand, 8753340 - 8753149
Alignment:
Q  320 gtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagactacttcactgcttgttcgttctaca------gata-ttgattcggtaa 412  Q
    ||||||||||||||||||| ||||| ||||||  ||||||| ||||||||||||| |||||||||||||||||||||      |||| |||||||||||     
T  8753340 gtataattacgcggaaaattcttaaagacagtgtgatcagctcgtctcagactacctcactgcttgttcgttctacatatcttgatagttgattcggtag 8753241  T
Q  413 cgggttaaatttggttgttaaagatactgataaagttgtggtcggtgatttaattacacagcaatctcaata-agataagtttattcatctc 503  Q
      ||||  ||| |||||| ||||||  ||||| |||||||||||||||| || ||  ||| |||||| || | ||||||||||||| |||||    
T  8753240 taggtttgattcggttgtcaaagatgttgatagagttgtggtcggtgatctagttcaacaacaatcttaaaagagataagtttattaatctc 8753149  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 399
Target Start/End: Complemental strand, 49873270 - 49873196
Alignment:
Q  325 attacgcggaaaatccttaaggacagttcgatcagcacgtctcagactacttcactgcttgttcgttctacagat 399  Q
    |||||||||||||| |||||| ||| | |||||||||||||||||||||| ||||||   |||||||||||||||    
T  49873270 attacgcggaaaattcttaagaacaatgcgatcagcacgtctcagactacctcactgtcagttcgttctacagat 49873196  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 373
Target Start/End: Original strand, 964624 - 964696
Alignment:
Q  300 ttaaatcctgggggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagacta 373  Q
    ||||||||||| || |||||||||| ||| || ||||||||||||||||||| |||| ||||||||||||||||    
T  964624 ttaaatcctggagg-ttagcgtatatttatgcagaaaatccttaaggacagtgcgataagcacgtctcagacta 964696  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 405
Target Start/End: Complemental strand, 48713669 - 48713564
Alignment:
Q  298 tgttaaatcctgggggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagactacttcactgcttgttcgttctacag 397  Q
    |||||||||||||||  |||||||||||| |||  ||||||||||||| ||||| |||||| ||||||||||||||  | | ||| |||| |||||||||    
T  48713669 tgttaaatcctggggt-ttagcgtataatcacgtagaaaatccttaag-acagtgcgatcaacacgtctcagactatcttattgcgtgtttgttctacag 48713572  T
Q  398 atattgat 405  Q
    || |||||    
T  48713571 atcttgat 48713564  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 496
Target Start/End: Original strand, 22020155 - 22020232
Alignment:
Q  419 aaatttggttgttaaagatactgataaagttgtggtcggtgatttaattacacagcaatctcaataagataagtttat 496  Q
    |||||| |||| |||||||  ||||||||||||||||| |||| |||||  ||| |||||||||  ||||||||||||    
T  22020155 aaattttgttgataaagatgttgataaagttgtggtcgatgatctaatttaacaacaatctcaaagagataagtttat 22020232  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 370
Target Start/End: Complemental strand, 4673426 - 4673386
Alignment:
Q  330 gcggaaaatccttaaggacagttcgatcagcacgtctcaga 370  Q
    ||||||||||||| |||||||| || |||||||||||||||    
T  4673426 gcggaaaatccttgaggacagtacgttcagcacgtctcaga 4673386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 376
Target Start/End: Complemental strand, 20924 - 20846
Alignment:
Q  298 tgttaaatcctgggggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagactactt 376  Q
    ||||||||||||| |||||||| ||||||||||| ||||||  ||||||| ||| |||||| ||||||||| |||||||    
T  20924 tgttaaatcctggaggattagcatataattacgcagaaaatttttaaggatagtgcgatcaacacgtctcatactactt 20846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 377
Target Start/End: Complemental strand, 6240216 - 6240151
Alignment:
Q  312 ggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagactacttc 377  Q
    ||||||| ||||||||| ||||||||||||||| ||||||  |||||||| |||||||||||||||    
T  6240216 ggattagagtataattaagcggaaaatccttaaagacagtgtgatcagcatgtctcagactacttc 6240151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 298 - 370
Target Start/End: Original strand, 26362578 - 26362650
Alignment:
Q  298 tgttaaatcctgggggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcaga 370  Q
    ||||||||| || |||||||||||||||||| ||| |||||||||||||||| | ||||||| || |||||||    
T  26362578 tgttaaatcatgagggattagcgtataattatgcgaaaaatccttaaggacaatgcgatcagtacatctcaga 26362650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 370
Target Start/End: Complemental strand, 4167843 - 4167772
Alignment:
Q  298 tgttaaatcctgggggattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcaga 370  Q
    |||||| |||||||||||||||||   || | |||||||||| || |||||||| ||||||||||||||||||    
T  4167843 tgttaactcctgggggattagcgttctat-atgcggaaaatctttgaggacagtgcgatcagcacgtctcaga 4167772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 387
Target Start/End: Original strand, 36666061 - 36666135
Alignment:
Q  313 gattagcgtataattacgcggaaaatccttaaggacagttcgatcagcacgtctcagactacttcactgcttgtt 387  Q
    |||||| ||||||||| |  |||||| |||||||| ||| |||||| ||||||| ||| ||| ||||||||||||    
T  36666061 gattagtgtataattaggtagaaaatacttaaggaaagtgcgatcaacacgtctgagattacctcactgcttgtt 36666135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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