View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7631_low_9 (Length: 223)
Name: NF7631_low_9
Description: NF7631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7631_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 34606799 - 34606991
Alignment:
| Q |
20 |
cagggttcatgcatgctccatcaaatggtccaccagctaggatgtttgctccaacaacaagtgcaattgctaagggtgcaattgtgccaatggttcctct |
119 |
Q |
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| T |
34606799 |
cagggttcatgcatgctccatcaaatggtccaccagctaggatgtttgctccaacaacaagtgcaattgctaagggtgcaattgtgccaatggttcctct |
34606898 |
T |
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| Q |
120 |
tttgggatcaatggcagttgcatacacaacatacattaaaccaaatgtcatggcaatctcaagtacaagagcgttcccagcaccaacaccaaa |
212 |
Q |
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| T |
34606899 |
tttgggatcaatggcagttgcatagacaacatacattaaaccaaatgtcatggcaatctcaagtacaagagcgttcccagcaccaacaccaaa |
34606991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 24834000 - 24833836
Alignment:
| Q |
20 |
cagggttcatgcatgctccatcaaatggtccaccagctaggatgtttgctccaacaacaagtgcaattgctaagggtgcaattgtgccaatggttcctct |
119 |
Q |
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|||||||||||||||||||||||||||| |||||| | ||||| ||||| ||||||| ||| |||||||||| |||||||| | ||||| | || || |
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| T |
24834000 |
cagggttcatgcatgctccatcaaatggaccaccaacaaggatatttgcaccaacaatgagtccaattgctaaaggtgcaatggctccaatactgcccct |
24833901 |
T |
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| Q |
120 |
tttgggatcaatggcagttgcatacacaacatacattaaaccaaatgtcatggcaatctcaagta |
184 |
Q |
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|||||||||||| ||||||||||| || ||||||| |||||||||||| ||||||||||| |
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| T |
24833900 |
tttgggatcaattgcagttgcatatactgtgtacattagtccaaatgtcatgataatctcaagta |
24833836 |
T |
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